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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050792 ID=TCONS_00050792|Name=TCONS_00050792|organism=Clytia hemisphaerica|type=transcript|length=387bp
GGAAATTACAAACTAGGCGGTTCAATTGTAAAAAGAGGTTTAATTTCTGG
TCAATGTCGTGTACTCTCATGTAGGTTTTATCACAAGAATatcaaagatt
taaaaagaCACCTTGAGCGAGCTCACAGTTAACGTTGGCATCTCATAGCA
AATTGCATCCGTCATTACTCAGCAGtgtcataaagaaaaataaaggtaAA
TCTCAtatgaaacatagaaaagtagAACTATGTAGTATTAATTACAGCCC
GTAAACACTATATGAAACCCCAAACAGATCTCACCCGTCATTTAAAAAAT
TGCCACAATGGCATGACGAAGAAACAGTATTATGCAAAAAGAAAACCGAA
AATAGTCGACGAGGACGGACCGTCTGAAAAACCGTTA Run BLAST on NCBI transcript from alignment at scaffold_188:8287..10263- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050792 ID=TCONS_00050792|Name=TCONS_00050792|organism=Clytia hemisphaerica|type=transcript|length=1977bp|location=Sequence derived from alignment at scaffold_188:8287..10263- (Clytia hemisphaerica)
GGAAATTACAAACTAGGCGGTTCAATTGTAAGTAGTTTCTCGTTGTCTTT
TTTGCCTTTTGATCAGGCAGATTACGTCTTCCCCGAGATGTTGCTATTTT
CAAAAGGTTTTCAAATCACATCAAATTTTATATATTTATGATGGTTTTCT
AGATACGAATCAATCCTGAAAATTTAAGTCTAAAGGCTCTTTCCTATCAC
TGCATATGGCTATGTTTGTCCACGGTCAAATGTTACATAAAAATCGAAAC
ATACACCGGCCTCGTTTTAATTTAATTCTATCGTTTAAAAAGAAAATTAA
ATTTGAAATAACTCGGAAGAGCCTTTTAAATAATTATTTTTTATTTGTTT
TGTATTTTTTCACAGATTTTTATTACTATACCAAAATGAAACACTCAAAC
ATTGTAACAAAAATATCAAAACAGATCGGGAAAGGTATTGGGATGAGTTT
GTCTTTATAGTAGACATCAAAGTTCATCAAAAGAATAACCAGATTTTTCA
AAATGATTAATAATTTCATAGTATGTAGAGATTGTTGTTCAAAATAAAGA
TAGGTGTTTATGACATTCCTGGAATATTTCAAACTTATTGATTTATCGGT
AATCTAAAAATAGTAATCGATCCGTCATTCTCTTCAAGGTATTACATCTA
AATATATTTTCTTTTCTAGCAGATTTTCGATTCATTTTTTAGGTAAAAAG
AGGTTTAATTTCTGGTCAATGTCGTGTACTCTCATGTAGGTTTTATCACA
AGAATATCAAAGATTTAAAAAGACACCTTGAGCGAGCTCACAGTTAACGT
TGGCATCTCATAGCAAATTGCATCCGTCATTACTCAGCAGTGTCATAAAG
AAAAATAAAGGTAAATCTCATATGAAACATAGAAAAGTAGAACTATGTAG
TATTAATTACAGCCCGTAAACACTATATGAAACCCCAAACAGATCTCACC
CGTCATTTAAAAAATTGCCACAATGGCATGACGAAGAAACAGTATTATGC
AAAAAGGTACTTACTTTGTTATATAAATTTCGGAATTTTCATCTTGCTAT
CAGCTGCTGGCAACTTCAAGGCAATCAAAATAATNTATAAATTTCGGAAT
TTCCATCTTGCTATCAGTAACCTGATAACAGATGTTCATAATTTTCTTAC
GCGCACGGTAAACCTCTAAAGGCACTTGAAAATTATACATCTGAGGAAAA
TAGTCCTCCCGCGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNATTTCGAGATTGCATATTCGTCAGATTGTTTGTTTTCACACATCCC
TTTAGAGCTTCAGCGTGGTGTGCAGAAAACATTCACAATCTGATCTCAGG
TTAGCTATCAGCTGCTGGCAACTTCAAGGCAATCAAAATAATCCAATTTG
AATAAGCGAAAGGTTTTCGCATTCCGCTTTTTCAAAAGTTTATCTAATTA
AATCTGGGCTTTTTAAAGAATGTAGACATGTAACAGAATGTAATGTCAAA
AAATTTATAAGTAACCTAGGTAGCTGTAGGCTTTTTTAGCTTTTATTTAA
GGCATAATTTAGACCACGTTTTCTTATTCAGAAAACCGAAAATAGTCGAC
GAGGACGGACCGTCTGAAAAACCGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050792-exon-scaffold_188-1575043694:10237..10263 | TCONS_00050792-exon-scaffold_188-1575043694:10237..10263 | Clytia hemisphaerica | exon |
| TCONS_00050792-exon-scaffold_188-1575043694:9258..9571 | TCONS_00050792-exon-scaffold_188-1575043694:9258..9571 | Clytia hemisphaerica | exon |
| TCONS_00050792-exon-scaffold_188-1575043694:8287..8332 | TCONS_00050792-exon-scaffold_188-1575043694:8287..8332 | Clytia hemisphaerica | exon |
| TCONS_00050792-exon-scaffold_188-1510915933:10237..10263 | TCONS_00050792-exon-scaffold_188-1510915933:10237..10263 | Clytia hemisphaerica | exon |
| TCONS_00050792-exon-scaffold_188-1510915933:9258..9571 | TCONS_00050792-exon-scaffold_188-1510915933:9258..9571 | Clytia hemisphaerica | exon |
| TCONS_00050792-exon-scaffold_188-1510915933:8287..8332 | TCONS_00050792-exon-scaffold_188-1510915933:8287..8332 | Clytia hemisphaerica | exon |
| TCONS_00050792-exon-scaffold_188-1491911889:10237..10263 | TCONS_00050792-exon-scaffold_188-1491911889:10237..10263 | Clytia hemisphaerica | exon |
| TCONS_00050792-exon-scaffold_188-1491911889:9258..9571 | TCONS_00050792-exon-scaffold_188-1491911889:9258..9571 | Clytia hemisphaerica | exon |
| TCONS_00050792-exon-scaffold_188-1491911889:8287..8332 | TCONS_00050792-exon-scaffold_188-1491911889:8287..8332 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_188 | supercontig | scaffold_188:8287..10263 - |
Blast
The following BLAST results are available for this feature:
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