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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050790 ID=TCONS_00050790|Name=TCONS_00050790|organism=Clytia hemisphaerica|type=transcript|length=1289bp
tttttttcaatctcagcagcgggactatgaccagtccggtgcttCCAGtg
ttcctaatttttttttcataaatgtccggcgtctaaaattccctgtatgc
aacaccggactgacaccggacttattgcgtccggtgtagcgaaaggatac
ttttttgCCAttggacaaatacaccggacagtccggtgcgtcggcagggt
cctatcaTGAATCATCTACAAGATCAAAAGCTATTGTCAAATAAACTGAA
ATAAACAATAAGGCTTCATCAGTCACTGTTCAATAGTTACTCAACTCCTG
AACTACTTGAATACCCTAAGTGTTGCGAAAGCATTGCTAATGCACCAGGA
CCCGATGGTTTTTCTGCTATCCTTCTCAAAAATTGTAGTCAGGAACTAGC
AACTCCTTTTTGTTCAATCTGGAGAGGGTGTTTTGATAACGGGGTAACAC
CACATCTCTTCAAAGACAGTCATATCATTCCTATTTACAAAGGTGGGACC
AAGGTGAAGCCCAAAATTATCGGCCAGTGTCACTAACCTCGCACATAATG
AAAACCTTTGAAAAGATTGTGcgaaaaaacattgttaattATCTAGAAGA
gaataacatttttaatgactccCAACATGGCTTTCGACAAGGTAGATCTT
GTTTGAGTCAACTTCTTGAACATTATGATACAATACTATCATACCTTGAG
AGAGGTATTAATGTCGACACAATTTATTTGGACTTCAGTAAGGCGTTCGA
CAAAGTTGATCATGCAATTTTGTTACATAAATTGTCTCAGCTCGGGATCA
AAGGAAAGCTATTGCGATGTATTGAATCGTTTTTGAAAAGGCAGAAAACA
ATCTGTTGTTGTAAATGGCTTCAAATCCGAAAGTGCCCCTGTCATATCAG
GAGTACCTCAAGGAACAGTACTTGGGCCAATTTTGATTCTTCTGATGATT
TCTGATATTGATGATAATATCAGGTATTCAATCCTTGCAAGCTTTGCTGA
CGATACTAGAATGCTTAAAGAAATCCAAGGAATAATTGACACGTTCAAGT
TGCAACATGATCTCAACATAGTTTATGATTGGACTGAGAACAATAACGTG
AAACTAAATAGTTGTaaatttgaacatttgaaaTACGGTAAAGATACTGa
atcaaaaagtttatcaaCCTATTTCACTAACAACAAAACtgtaattgaaa
acaaaaactctATCAAAGATCTTGGAGTGTGGATGAGTAGTGACTGCTCA
TTCACTGATCACATCAATAAAATGATAGCAAAAGCTAAG Run BLAST on NCBI protein sequence of TCONS_00050790-protein >TCONS_00050790-protein ID=TCONS_00050790-protein|Name=TCONS_00050790-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MKTFEKIVRKNIVNYLEENNIFNDSQHGFRQGRSCLSQLLEHYDTILSYL
ERGINVDTIYLDFSKAFDKVDHAILLHKLSQLGIKGKLLRCIESFLKRQK
TICCCKWLQIRKCPCHIRSTSRNSTWANFDSSDDF Run BLAST on NCBI transcript from alignment at scaffold_187:33785..35073 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050790 ID=TCONS_00050790|Name=TCONS_00050790|organism=Clytia hemisphaerica|type=transcript|length=1289bp|location=Sequence derived from alignment at scaffold_187:33785..35073 (Clytia hemisphaerica)
CTTAGCTTTTGCTATCATTTTATTGATGTGATCAGTGAATGAGCAGTCAC
TACTCATCCACACTCCAAGATCTTTGATagagtttttgttttcaattaca
GTTTTGTTGTTAGTGAAATAGGttgataaactttttgattCAGTATCTTT
ACCGTAtttcaaatgttcaaatttACAACTATTTAGTTTCACGTTATTGT
TCTCAGTCCAATCATAAACTATGTTGAGATCATGTTGCAACTTGAACGTG
TCAATTATTCCTTGGATTTCTTTAAGCATTCTAGTATCGTCAGCAAAGCT
TGCAAGGATTGAATACCTGATATTATCATCAATATCAGAAATCATCAGAA
GAATCAAAATTGGCCCAAGTACTGTTCCTTGAGGTACTCCTGATATGACA
GGGGCACTTTCGGATTTGAAGCCATTTACAACAACAGATTGTTTTCTGCC
TTTTCAAAAACGATTCAATACATCGCAATAGCTTTCCTTTGATCCCGAGC
TGAGACAATTTATGTAACAAAATTGCATGATCAACTTTGTCGAACGCCTT
ACTGAAGTCCAAATAAATTGTGTCGACATTAATACCTCTCTCAAGGTATG
ATAGTATTGTATCATAATGTTCAAGAAGTTGACTCAAACAAGATCTACCT
TGTCGAAAGCCATGTTGggagtcattaaaaatgttattcTCTTCTAGATa
attaacaatgttttttcgCACAATCTTTTCAAAGGTTTTCATTATGTGCG
AGGTTAGTGACACTGGCCGATAATTTTGGGCTTCACCTTGGTCCCACCTT
TGTAAATAGGAATGATATGACTGTCTTTGAAGAGATGTGGTGTTACCCCG
TTATCAAAACACCCTCTCCAGATTGAACAAAAAGGAGTTGCTAGTTCCTG
ACTACAATTTTTGAGAAGGATAGCAGAAAAACCATCGGGTCCTGGTGCAT
TAGCAATGCTTTCGCAACACTTAGGGTATTCAAGTAGTTCAGGAGTTGAG
TAACTATTGAACAGTGACTGATGAAGCCTTATTGTTTATTTCAGTTTATT
TGACAATAGCTTTTGATCTTGTAGATGATTCAtgataggaccctgccgac
gcaccggactgtccggtgtatttgtccaaTGGcaaaaaagtatcctttcg
ctacaccggacgcaataagtccggtgtcagtccggtgttgcatacaggga
attttagacgccggacatttatgaaaaaaaaattaggaacaCTGGaagca
ccggactggtcatagtcccgctgctgagattgaaaaaaa Coding sequence (CDS) from alignment at scaffold_187:33785..35073 >TCONS_00050790 ID=TCONS_00050790|Name=TCONS_00050790|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_187:33785..35073 (Clytia hemisphaerica)
TCAGAAATCATCAGAAGAATCAAAATTGGCCCAAGTACTGTTCCTTGAGG
TACTCCTGATATGACAGGGGCACTTTCGGATTTGAAGCCATTTACAACAA
CAGATTGTTTTCTGCCTTTTCAAAAACGATTCAATACATCGCAATAGCTT
TCCTTTGATCCCGAGCTGAGACAATTTATGTAACAAAATTGCATGATCAA
CTTTGTCGAACGCCTTACTGAAGTCCAAATAAATTGTGTCGACATTAATA
CCTCTCTCAAGGTATGATAGTATTGTATCATAATGTTCAAGAAGTTGACT
CAAACAAGATCTACCTTGTCGAAAGCCATGTTGggagtcattaaaaatgt
tattcTCTTCTAGATaattaacaatgttttttcgCACAATCTTTTCAAAG
GTTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050790-exon-scaffold_187-1491911889:33785..35073 | TCONS_00050790-exon-scaffold_187-1491911889:33785..35073 | Clytia hemisphaerica | exon |
| TCONS_00050790-exon-scaffold_187-1510915933:33785..35073 | TCONS_00050790-exon-scaffold_187-1510915933:33785..35073 | Clytia hemisphaerica | exon |
| TCONS_00050790-exon-scaffold_187-1575043694:33785..35073 | TCONS_00050790-exon-scaffold_187-1575043694:33785..35073 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_187 | supercontig | scaffold_187:33785..35073 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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