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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050770 ID=TCONS_00050770|Name=TCONS_00050770|organism=Clytia hemisphaerica|type=transcript|length=1424bp
GTATTgggagatgttggccaaggGGATTGTCGATGGTATTgggagatgtt
ggccaaggGGATTGTCGTTGGTATTTGGAGATGTTGGCCAAGGGGATTGT
CGTTGGTATTGGGAGATGTTGGCCAACAAGGTGATGCTCGCTGGTCGATT
GGAGGATTGGGACCATTGGGGAGGCTGGCATAGCTTTATATTGTCCCAGG
TTATCATTTTATTTACATACTTTAAGAGAATACTAAAGTTCAGTTGCTTG
GAACAAGGTGGTACAAGAAGAAGCCATATGGATAAAAAGCTTTCAATATG
ATTGGTATGAACTCTAACAGATGTTTGGTTGTATgatatttaacattttt
atttggaaTTGGGTTTTACCTAATTTTGGGTGTTACGCAAGGGGCTCGCA
AAAATGGGaacaattttattatatttctggccaaaccaaaacaaaaatta
atacaccattaaaacataattttttctctaCGAAACGTAACATtgattat
ttgaaaattctctcttttctcctttagcttttaaaatttctttcaaacaa
aAGGCCTATTTAGTCGATATAAGTTACGCTTCTAAAGGCACAGATGCTTT
CTTTAATATAAGATATATTTCTGTGGTGAAATGGTAAATTTTTCTTGTCT
TGGacagtgcttataaaaacattatacaaaaaagagaacaaatttCTTTA
TCTCAGGTAGTTTATAAAcaaagattttactttttataagcattaatTCA
ATCCCACAGATCCCAGCTGGATGTAGTAATCAagtacgaaacctgaacat
ttTAAAGTTCCTCCTGTCAAGGATACACCTAGGCAAGGTGGTACACAGAT
GGTGCACGTCAAAAAAGTCGGTCTATGCGGCATTTATATTGATTTACACT
AGCTTTTTCTAATTTGagtttaaaatattatttcacATAACTATTATAGA
CTGGAGTGTCTCTGTCAGTCGGCTGACAAAGGTAGATTTGGAGTAATACA
AAGTAGGATCATTGAAGGGCATTGATTAGATGACTTGAATAGCCTGTTAT
AACAAAACTGTAAAGTTATAAACGGCTCATGCTGCAGATCAGGGGCAAGT
TAAATATAGTTTTTTCATGGCCTTTGATAGATTTAGGTTTAATATAAAAT
CGgtatataaaataataattcattTTCTATTACATGTTCTTTTGCTACAA
AATTTTCCAAGAGAGAGTATGTTTACATTGAGTCATTATCACACGTAGAG
CATCAGTTGTACAGATAGCTGGTCAAGACTTGGGAAGAAGGCAAGAAAAT
TTAAGTTGTGAAGAAATGATATTAATTCCCCTCAATTGGCTAGCATGTTG
TAGAATGGGCAAGGATGGAGTGAACTGTAAAGGAGGTACTACCAATAACA
AGTTTTTCATAATTACTAATGGCT Run BLAST on NCBI transcript from alignment at scaffold_185:192217..193640 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050770 ID=TCONS_00050770|Name=TCONS_00050770|organism=Clytia hemisphaerica|type=transcript|length=1424bp|location=Sequence derived from alignment at scaffold_185:192217..193640 (Clytia hemisphaerica)
AGCCATTAGTAATTATGAAAAACTTGTTATTGGTAGTACCTCCTTTACAG
TTCACTCCATCCTTGCCCATTCTACAACATGCTAGCCAATTGAGGGGAAT
TAATATCATTTCTTCACAACTTAAATTTTCTTGCCTTCTTCCCAAGTCTT
GACCAGCTATCTGTACAACTGATGCTCTACGTGTGATAATGACTCAATGT
AAACATACTCTCTCTTGGAAAATTTTGTAGCAAAAGAACATGTAATAGAA
aatgaattattattttatatacCGATTTTATATTAAACCTAAATCTATCA
AAGGCCATGAAAAAACTATATTTAACTTGCCCCTGATCTGCAGCATGAGC
CGTTTATAACTTTACAGTTTTGTTATAACAGGCTATTCAAGTCATCTAAT
CAATGCCCTTCAATGATCCTACTTTGTATTACTCCAAATCTACCTTTGTC
AGCCGACTGACAGAGACACTCCAGTCTATAATAGTTATgtgaaataatat
tttaaactCAAATTAGAAAAAGCTAGTGTAAATCAATATAAATGCCGCAT
AGACCGACTTTTTTGACGTGCACCATCTGTGTACCACCTTGCCTAGGTGT
ATCCTTGACAGGAGGAACTTTAaaatgttcaggtttcgtactTGATTACT
ACATCCAGCTGGGATCTGTGGGATTGAattaatgcttataaaaagtaaaa
tctttgTTTATAAACTACCTGAGATAAAGaaatttgttctcttttttgta
taatgtttttataagcactgtCCAAGACAAGAAAAATTTACCATTTCACC
ACAGAAATATATCTTATATTAAAGAAAGCATCTGTGCCTTTAGAAGCGTA
ACTTATATCGACTAAATAGGCCTtttgtttgaaagaaattttaaaagcta
aaggagaaaagagagaattttcaaataatcaATGTTACGTTTCGtagaga
aaaaattatgttttaatggtgtattaatttttgttttggtttggccagaa
atataataaaattgttCCCATTTTTGCGAGCCCCTTGCGTAACACCCAAA
ATTAGGTAAAACCCAAttccaaataaaaatgttaaatatcATACAACCAA
ACATCTGTTAGAGTTCATACCAATCATATTGAAAGCTTTTTATCCATATG
GCTTCTTCTTGTACCACCTTGTTCCAAGCAACTGAACTTTAGTATTCTCT
TAAAGTATGTAAATAAAATGATAACCTGGGACAATATAAAGCTATGCCAG
CCTCCCCAATGGTCCCAATCCTCCAATCGACCAGCGAGCATCACCTTGTT
GGCCAACATCTCCCAATACCAACGACAATCCCCTTGGCCAACATCTCCAA
ATACCAACGACAATCCccttggccaacatctcccAATACCATCGACAATC
CccttggccaacatctcccAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050770-exon-scaffold_185-1491911889:192217..193640 | TCONS_00050770-exon-scaffold_185-1491911889:192217..193640 | Clytia hemisphaerica | exon |
| TCONS_00050770-exon-scaffold_185-1510915933:192217..193640 | TCONS_00050770-exon-scaffold_185-1510915933:192217..193640 | Clytia hemisphaerica | exon |
| TCONS_00050770-exon-scaffold_185-1575043694:192217..193640 | TCONS_00050770-exon-scaffold_185-1575043694:192217..193640 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_185 | supercontig | scaffold_185:192217..193640 . |
Blast
The following BLAST results are available for this feature:
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