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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050766 ID=TCONS_00050766|Name=TCONS_00050766|organism=Clytia hemisphaerica|type=transcript|length=1311bp
TGATATTTGTAGCGGCCAAGTTGCTTTTTTTGTTGATCACGAAGAATCCA
AGAAGGTAAAAAAGCTGGGAACCATTGTCAGGGTTATTAAACGATTTTCT
TCAAAGTCAACCGCCATTTTATCATCCGGAAAAGGATCGGAATTAAGCCA
ATTACAGCTTATAATTCAACGTTCAACTAGTGTTGAGAGTATTATTAATT
CAGACGAATTCGCCAATATTTCTGgaaaaaacattatcaaaatatGCAAG
TCATTGAACAAAGATACAATCACTGAAGCTGAAAAAGCCTTTGACAACTT
CGCAAAAGATCCGGTAAACAAACCAAAAGAGTTGGAACCACAAGAAATGA
CAGTTGTGCTATTGAAAAAGGTGTTGACTGAGAATGGAGTCTCTTATAAG
AGCAAAGATAGGAAGCCCGAATTAATAAACAAATTGAAGGAAGTGCTTGA
AAAAAGAgcacaagaaaaacaaaaaaacgacGATTGAAACTATATTATTA
TCCTTTATTTCATCGATATAAAAAATCCCTTATATCCCTTAAAATCCCTT
AAAAATCGTCTTAATGATTTACAAATAGTTGTCCCATTATTACAAAGCGG
TGCTCTAGAAACTAAACTAATCTCATGAATGTTGATACAGTactacttcg
aataaacgccccagGTGTttagtttattaaatttttatgtaaaaagACGA
TTCTTAGAAAAGATTACCGCATTACTTCGAAAAACATCTTGAACATCCCC
TTCCTTTGAACGCCTTCTCGAATAAATGCATCTCCTTTACACCcgcttct
cacagacccactggaaccctTTCTActggaaaattggcaaaaatatcgtc
ACCAGTGGAatattatactctaatttttgtccccactgaaaataaccact
gaaaataaccagataagcaaatcctctcactgcaaaatattgtgctattt
ttttcatCCCCACCAAATTTTTTGgctagaaatcaatgaaattcaAGTCT
CCGCAACCAAAAAGAATaagggaatatcaatccccatcgaattTGGGTCC
GTTATTTtctacccccactggctgataaaatcccaccggatCTATGAGAA
GGGGATGTTCGCTAGGAGAGACGTTTACTGGAACACTTTGGACTAAAACG
TTGTACTAAAACACTTAGCGTCGTTAACTCCCGCCCATATTAGTTTGCTA
ATGTTATTAAATATTAATAATTAGACTATACTATACTTTTATCTATCTTA
TACTAATCGAATTATGTCGTTATATATCAAACCCGAgtttaaaaataaat
gtattcaATCG Run BLAST on NCBI protein sequence of TCONS_00050766-protein >TCONS_00050766-protein ID=TCONS_00050766-protein|Name=TCONS_00050766-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
DICSGQVAFFVDHEESKKVKKLGTIVRVIKRFSSKSTAILSSGKGSELSQ
LQLIIQRSTSVESIINSDEFANISGKNIIKICKSLNKDTITEAEKAFDNF
AKDPVNKPKELEPQEMTVVLLKKVLTENGVSYKSKDRKPELINKLKEVLE
KRAQEKQKNDD Run BLAST on NCBI transcript from alignment at scaffold_185:92248..93558 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050766 ID=TCONS_00050766|Name=TCONS_00050766|organism=Clytia hemisphaerica|type=transcript|length=1311bp|location=Sequence derived from alignment at scaffold_185:92248..93558 (Clytia hemisphaerica)
CGATtgaatacatttatttttaaacTCGGGTTTGATATATAACGACATAA
TTCGATTAGTATAAGATAGATAAAAGTATAGTATAGTCTAATTATTAATA
TTTAATAACATTAGCAAACTAATATGGGCGGGAGTTAACGACGCTAAGTG
TTTTAGTACAACGTTTTAGTCCAAAGTGTTCCAGTAAACGTCTCTCCTAG
CGAACATCCCCTTCTCATAGatccggtgggattttatcagccagtggggg
tagaAAATAACGGACCCAaattcgatggggattgatattcccttATTCTT
TTTGGTTGCGGAGACTtgaatttcattgatttctagcCAAAAAATTTGGT
GGGGatgaaaaaaatagcacaatattttgcagtgagaggatttgcttatc
tggttattttcagtggttattttcagtggggacaaaaattagagtataat
atTCCACTGGTgacgatatttttgccaattttccagTAGAAagggttcca
gtgggtctgtgagaagcgGGTGTAAAGGAGATGCATTTATTCGAGAAGGC
GTTCAAAGGAAGGGGATGTTCAAGATGTTTTTCGAAGTAATGCGGTAATC
TTTTCTAAGAATCGTctttttacataaaaatttaataaactaaACACctg
gggcgtttattcgaagtagtACTGTATCAACATTCATGAGATTAGTTTAG
TTTCTAGAGCACCGCTTTGTAATAATGGGACAACTATTTGTAAATCATTA
AGACGATTTTTAAGGGATTTTAAGGGATATAAGGGATTTTTTATATCGAT
GAAATAAAGGATAATAATATAGTTTCAATCgtcgtttttttgtttttctt
gtgcTCTTTTTTCAAGCACTTCCTTCAATTTGTTTATTAATTCGGGCTTC
CTATCTTTGCTCTTATAAGAGACTCCATTCTCAGTCAACACCTTTTTCAA
TAGCACAACTGTCATTTCTTGTGGTTCCAACTCTTTTGGTTTGTTTACCG
GATCTTTTGCGAAGTTGTCAAAGGCTTTTTCAGCTTCAGTGATTGTATCT
TTGTTCAATGACTTGCatattttgataatgttttttcCAGAAATATTGGC
GAATTCGTCTGAATTAATAATACTCTCAACACTAGTTGAACGTTGAATTA
TAAGCTGTAATTGGCTTAATTCCGATCCTTTTCCGGATGATAAAATGGCG
GTTGACTTTGAAGAAAATCGTTTAATAACCCTGACAATGGTTCCCAGCTT
TTTTACCTTCTTGGATTCTTCGTGATCAACAAAAAAAGCAACTTGGCCGC
TACAAATATCA Coding sequence (CDS) from alignment at scaffold_185:92248..93558 >TCONS_00050766 ID=TCONS_00050766|Name=TCONS_00050766|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_185:92248..93558 (Clytia hemisphaerica)
TCAATCgtcgtttttttgtttttcttgtgcTCTTTTTTCAAGCACTTCCT
TCAATTTGTTTATTAATTCGGGCTTCCTATCTTTGCTCTTATAAGAGACT
CCATTCTCAGTCAACACCTTTTTCAATAGCACAACTGTCATTTCTTGTGG
TTCCAACTCTTTTGGTTTGTTTACCGGATCTTTTGCGAAGTTGTCAAAGG
CTTTTTCAGCTTCAGTGATTGTATCTTTGTTCAATGACTTGCatattttg
ataatgttttttcCAGAAATATTGGCGAATTCGTCTGAATTAATAATACT
CTCAACACTAGTTGAACGTTGAATTATAAGCTGTAATTGGCTTAATTCCG
ATCCTTTTCCGGATGATAAAATGGCGGTTGACTTTGAAGAAAATCGTTTA
ATAACCCTGACAATGGTTCCCAGCTTTTTTACCTTCTTGGATTCTTCGTG
ATCAACAAAAAAAGCAACTTGGCCGCTACAAATATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050766-exon-scaffold_185-1491911889:92248..93558 | TCONS_00050766-exon-scaffold_185-1491911889:92248..93558 | Clytia hemisphaerica | exon |
| TCONS_00050766-exon-scaffold_185-1510915933:92248..93558 | TCONS_00050766-exon-scaffold_185-1510915933:92248..93558 | Clytia hemisphaerica | exon |
| TCONS_00050766-exon-scaffold_185-1575043694:92248..93558 | TCONS_00050766-exon-scaffold_185-1575043694:92248..93558 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_185 | supercontig | scaffold_185:92248..93558 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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