TCONS_00050766 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050766
Unique NameTCONS_00050766
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050766 ID=TCONS_00050766|Name=TCONS_00050766|organism=Clytia hemisphaerica|type=transcript|length=1311bp
TGATATTTGTAGCGGCCAAGTTGCTTTTTTTGTTGATCACGAAGAATCCA
AGAAGGTAAAAAAGCTGGGAACCATTGTCAGGGTTATTAAACGATTTTCT
TCAAAGTCAACCGCCATTTTATCATCCGGAAAAGGATCGGAATTAAGCCA
ATTACAGCTTATAATTCAACGTTCAACTAGTGTTGAGAGTATTATTAATT
CAGACGAATTCGCCAATATTTCTGgaaaaaacattatcaaaatatGCAAG
TCATTGAACAAAGATACAATCACTGAAGCTGAAAAAGCCTTTGACAACTT
CGCAAAAGATCCGGTAAACAAACCAAAAGAGTTGGAACCACAAGAAATGA
CAGTTGTGCTATTGAAAAAGGTGTTGACTGAGAATGGAGTCTCTTATAAG
AGCAAAGATAGGAAGCCCGAATTAATAAACAAATTGAAGGAAGTGCTTGA
AAAAAGAgcacaagaaaaacaaaaaaacgacGATTGAAACTATATTATTA
TCCTTTATTTCATCGATATAAAAAATCCCTTATATCCCTTAAAATCCCTT
AAAAATCGTCTTAATGATTTACAAATAGTTGTCCCATTATTACAAAGCGG
TGCTCTAGAAACTAAACTAATCTCATGAATGTTGATACAGTactacttcg
aataaacgccccagGTGTttagtttattaaatttttatgtaaaaagACGA
TTCTTAGAAAAGATTACCGCATTACTTCGAAAAACATCTTGAACATCCCC
TTCCTTTGAACGCCTTCTCGAATAAATGCATCTCCTTTACACCcgcttct
cacagacccactggaaccctTTCTActggaaaattggcaaaaatatcgtc
ACCAGTGGAatattatactctaatttttgtccccactgaaaataaccact
gaaaataaccagataagcaaatcctctcactgcaaaatattgtgctattt
ttttcatCCCCACCAAATTTTTTGgctagaaatcaatgaaattcaAGTCT
CCGCAACCAAAAAGAATaagggaatatcaatccccatcgaattTGGGTCC
GTTATTTtctacccccactggctgataaaatcccaccggatCTATGAGAA
GGGGATGTTCGCTAGGAGAGACGTTTACTGGAACACTTTGGACTAAAACG
TTGTACTAAAACACTTAGCGTCGTTAACTCCCGCCCATATTAGTTTGCTA
ATGTTATTAAATATTAATAATTAGACTATACTATACTTTTATCTATCTTA
TACTAATCGAATTATGTCGTTATATATCAAACCCGAgtttaaaaataaat
gtattcaATCG
Run BLAST on NCBI

protein sequence of TCONS_00050766-protein

>TCONS_00050766-protein ID=TCONS_00050766-protein|Name=TCONS_00050766-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
DICSGQVAFFVDHEESKKVKKLGTIVRVIKRFSSKSTAILSSGKGSELSQ
LQLIIQRSTSVESIINSDEFANISGKNIIKICKSLNKDTITEAEKAFDNF
AKDPVNKPKELEPQEMTVVLLKKVLTENGVSYKSKDRKPELINKLKEVLE
KRAQEKQKNDD
Run BLAST on NCBI

transcript from alignment at scaffold_185:92248..93558

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050766 ID=TCONS_00050766|Name=TCONS_00050766|organism=Clytia hemisphaerica|type=transcript|length=1311bp|location=Sequence derived from alignment at scaffold_185:92248..93558 (Clytia hemisphaerica)
CGATtgaatacatttatttttaaacTCGGGTTTGATATATAACGACATAA TTCGATTAGTATAAGATAGATAAAAGTATAGTATAGTCTAATTATTAATA TTTAATAACATTAGCAAACTAATATGGGCGGGAGTTAACGACGCTAAGTG TTTTAGTACAACGTTTTAGTCCAAAGTGTTCCAGTAAACGTCTCTCCTAG CGAACATCCCCTTCTCATAGatccggtgggattttatcagccagtggggg tagaAAATAACGGACCCAaattcgatggggattgatattcccttATTCTT TTTGGTTGCGGAGACTtgaatttcattgatttctagcCAAAAAATTTGGT GGGGatgaaaaaaatagcacaatattttgcagtgagaggatttgcttatc tggttattttcagtggttattttcagtggggacaaaaattagagtataat atTCCACTGGTgacgatatttttgccaattttccagTAGAAagggttcca gtgggtctgtgagaagcgGGTGTAAAGGAGATGCATTTATTCGAGAAGGC GTTCAAAGGAAGGGGATGTTCAAGATGTTTTTCGAAGTAATGCGGTAATC TTTTCTAAGAATCGTctttttacataaaaatttaataaactaaACACctg gggcgtttattcgaagtagtACTGTATCAACATTCATGAGATTAGTTTAG TTTCTAGAGCACCGCTTTGTAATAATGGGACAACTATTTGTAAATCATTA AGACGATTTTTAAGGGATTTTAAGGGATATAAGGGATTTTTTATATCGAT GAAATAAAGGATAATAATATAGTTTCAATCgtcgtttttttgtttttctt gtgcTCTTTTTTCAAGCACTTCCTTCAATTTGTTTATTAATTCGGGCTTC CTATCTTTGCTCTTATAAGAGACTCCATTCTCAGTCAACACCTTTTTCAA TAGCACAACTGTCATTTCTTGTGGTTCCAACTCTTTTGGTTTGTTTACCG GATCTTTTGCGAAGTTGTCAAAGGCTTTTTCAGCTTCAGTGATTGTATCT TTGTTCAATGACTTGCatattttgataatgttttttcCAGAAATATTGGC GAATTCGTCTGAATTAATAATACTCTCAACACTAGTTGAACGTTGAATTA TAAGCTGTAATTGGCTTAATTCCGATCCTTTTCCGGATGATAAAATGGCG GTTGACTTTGAAGAAAATCGTTTAATAACCCTGACAATGGTTCCCAGCTT TTTTACCTTCTTGGATTCTTCGTGATCAACAAAAAAAGCAACTTGGCCGC TACAAATATCA

Coding sequence (CDS) from alignment at scaffold_185:92248..93558

>TCONS_00050766 ID=TCONS_00050766|Name=TCONS_00050766|organism=Clytia hemisphaerica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_185:92248..93558 (Clytia hemisphaerica)
TCAATCgtcgtttttttgtttttcttgtgcTCTTTTTTCAAGCACTTCCT
TCAATTTGTTTATTAATTCGGGCTTCCTATCTTTGCTCTTATAAGAGACT
CCATTCTCAGTCAACACCTTTTTCAATAGCACAACTGTCATTTCTTGTGG
TTCCAACTCTTTTGGTTTGTTTACCGGATCTTTTGCGAAGTTGTCAAAGG
CTTTTTCAGCTTCAGTGATTGTATCTTTGTTCAATGACTTGCatattttg
ataatgttttttcCAGAAATATTGGCGAATTCGTCTGAATTAATAATACT
CTCAACACTAGTTGAACGTTGAATTATAAGCTGTAATTGGCTTAATTCCG
ATCCTTTTCCGGATGATAAAATGGCGGTTGACTTTGAAGAAAATCGTTTA
ATAACCCTGACAATGGTTCCCAGCTTTTTTACCTTCTTGGATTCTTCGTG
ATCAACAAAAAAAGCAACTTGGCCGCTACAAATATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032156XLOC_032156Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050766-proteinTCONS_00050766-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050766-exon-scaffold_185-1491911889:92248..93558TCONS_00050766-exon-scaffold_185-1491911889:92248..93558Clytia hemisphaericaexon
TCONS_00050766-exon-scaffold_185-1510915933:92248..93558TCONS_00050766-exon-scaffold_185-1510915933:92248..93558Clytia hemisphaericaexon
TCONS_00050766-exon-scaffold_185-1575043694:92248..93558TCONS_00050766-exon-scaffold_185-1575043694:92248..93558Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_185supercontigscaffold_185:92248..93558 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0313942 0.109355 0.0887437 0.173661 0.0343074 0.124171 0.116248 0.0271292 0 0.0326168 0.021441 0.128467 0.133414 0.0182808 0.137327 0 0.0990852 0 0 0.0311269 0 0 0 0.172826 0.21594 0.0441443 0.047112 0.0357328 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025856HeH/LEM_domain
IPR003034SAP_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050766 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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