TCONS_00050761 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050761
Unique NameTCONS_00050761
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length294

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050761 ID=TCONS_00050761|Name=TCONS_00050761|organism=Clytia hemisphaerica|type=transcript|length=294bp
GGGACGACTTTTTTGGGTTCCTTGCTGGGAGAGTTCTCCTCCTTGTGCCA
TGTGGTTTTGAAAGTCCATTCTTTCCAGCAAGGACAGTTGAATGAAGCCT
GACCATCAACAAGTCAACAATGAATCTTCATATTCATTTTTAACTAGTAT
AGTGGCGTTATAATCCAGACCAGCTAAGATGAAGTATGGGATTATTTGGA
CAGTACGtcttcattgtcaaatatatatCTAGTCTTTAACATCATGTCTT
CACTTATCGTTCGATCTCATCCAGCCCACACTAGCGTTTTCCGC
Run BLAST on NCBI

transcript from alignment at scaffold_185:9268..9561

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050761 ID=TCONS_00050761|Name=TCONS_00050761|organism=Clytia hemisphaerica|type=transcript|length=294bp|location=Sequence derived from alignment at scaffold_185:9268..9561 (Clytia hemisphaerica)
GCGGAAAACGCTAGTGTGGGCTGGATGAGATCGAACGATAAGTGAAGACA
TGATGTTAAAGACTAGatatatatttgacaatgaagaCGTACTGTCCAAA
TAATCCCATACTTCATCTTAGCTGGTCTGGATTATAACGCCACTATACTA
GTTAAAAATGAATATGAAGATTCATTGTTGACTTGTTGATGGTCAGGCTT
CATTCAACTGTCCTTGCTGGAAAGAATGGACTTTCAAAACCACATGGCAC
AAGGAGGAGAACTCTCCCAGCAAGGAACCCAAAAAAGTCGTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032151XLOC_032151Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050761-exon-scaffold_185-1491911889:9268..9561TCONS_00050761-exon-scaffold_185-1491911889:9268..9561Clytia hemisphaericaexon
TCONS_00050761-exon-scaffold_185-1510915933:9268..9561TCONS_00050761-exon-scaffold_185-1510915933:9268..9561Clytia hemisphaericaexon
TCONS_00050761-exon-scaffold_185-1575043694:9268..9561TCONS_00050761-exon-scaffold_185-1575043694:9268..9561Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_185supercontigscaffold_185:9268..9561 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.66509	0.811864	0	2.30559	2.80684	0.8872	0.535185	1.00207	0.350785	0.434504	0	0	0.83055	0.287512	0.709121	0.253665	0	0.640594	0.885015	0.926104	0	1.76683	0.477291	0	0	0	2.28317	1.8275	0.924061	1.88294
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050761 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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