TCONS_00050747 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050747
Unique NameTCONS_00050747
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length833

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050747 ID=TCONS_00050747|Name=TCONS_00050747|organism=Clytia hemisphaerica|type=transcript|length=833bp
cgatttttagagcattttacctgtaaattgccaattattttcaagcaatg
ttaaaaactttcacaaaaatgccatatTTTTGCTCAAGGTATATACTACA
TGCTAGAATTAGGCTGGGTCGGATCCTAACCTTAGAatataccgtaagaa
tattttaggatggtttttcccaaaaatgaaaaaacaccattcttataaaa
aaaacgtgtactaaatTATGTGTATGTGAAATTGAGATAATGCtaataat
ttaaaataaaaatcgaTCAAAAATTCACCATGAATCTACTACCTACCTGT
AAACACTTTGAAAAAAGAGACTTTATCAACATACTTAGTTGCCTCATTTT
TTGAAACTTGAACTTATcgaatctaatttttttatcgTTTTAAAACAGAA
TAATAATCTAACTTAACTTAGGCGGAACCAAATTCTGTGGCTTAGGTTCA
CCTTATAACCTATGGTCAAGGCAGCGTTTTTATGATCTCAGACGAAAAAT
GGACTACAGTTCTGAAcattctaaaaataaaacagCCAATTTTACGATCA
AAATGATATGATAATACCGGAAAccaaattagtttgttttttctgatcat
tttttgTAATGTTTGTACTGTGGATGatgattaaaaatgtttttctcttg
GCTTCAAAATGAACGACAATCAAAGCAATCCCACTTTCTATCGATTGAAT
GAAATATTAGGTAATGAGATGTTCGGCAGATTGATATTCTTCGGAAGGTT
CGGTAAATTCGGGCTCATGTTTTTTACAGCGTTGAGAGCTTTCGTCGTGT
TGGCTGATATACCACCCTAaggttgaaagaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_185:18665..23367-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050747 ID=TCONS_00050747|Name=TCONS_00050747|organism=Clytia hemisphaerica|type=transcript|length=4703bp|location=Sequence derived from alignment at scaffold_185:18665..23367- (Clytia hemisphaerica)
CGATTTTTAGAGCATTTTACCTGTAAATTGCCAATTATTTTCAAGCAATG
TTAAAAACTTTCACAAAAATGCCATATTTTTGCTCAAGGTATATACTACA
TGCTAGAATTAGGCTGGGTCGGATTTTAACCTTAGAATATACCGTAAGAA
TATTTTAGGATGGTTTTCCCAAAAAGTTAAGGATATCCATCAAAAAATGA
AAAAAAAACCATTCTTATAAAAAAAACGTGTACTAAATTATGTGTATGTG
AAATTGAGATAATGCTAATAATTTAAAATAAAAATCGATCAAAAATTGTC
ACCAAGAATCTACTACCTACATGTAAACACTTTGAAAAAGAGACTTTATC
AACACATTTAGTTGCCTTATTTTTTGAAACTTGAACTTATCGAATCTTAT
TTTTTTATCATTTTAAAACAGAATAATAATCTAACTTAACTTAGGTGGAA
CCAAATTCTGTGGCTTAGGTTCACCTTATAACCTATGGTCAAGGCAGCGT
TTTTATGATCTCAGACGAAAAATGGACTACAGTTCTGAACATTCTAAAAA
TAAAACAGCCAATTTTACGATCAAAATGATATGATAATACCGGAAACCAA
ATTAGTTTGTNAACATTCTAAAAATAAATATTCAACGAGGCGAAGCCGAG
TTGAATATTCATCACCGAGGGTTGATAAATCCAATAACCAACGTAAACCT
ATTGAATATATGTTTTATTATATGCCCAAAGACGAAAACAAGTCATAAGT
TTCTATTTTGTAAAGAGATTCACACAAAACTCTTACACAAATCGAACATT
CGAATGTTTTTTTCTTTTTAACTGCTTTTTAATGACTTAAGTCATTCAAT
TGTTCACGAAATTCACAATTGAACTCTTTTATTGTCTCTCTTTAATAGCA
ACAAAATAAAAGTGACAAAAAATCAAGTTTCGAAAAAAAGTTTGAAAAAA
AAAATTCTACTGTGGTATAATCCCGGGGGGGGCACTGGGTTTGCGGACTG
ACGGTATGTGCGGGCAAAAAATTGGCTTTTAAAATTGCACCCTTACAGTG
CAGCAAAAATCAGTAAAAATCATACCCTTAGAGTGCATTTTCCCCCAAAT
TTTCGATCCCTTTCGTGCAAAAAATGGTCAAAATTCTAGCATTTTTGGTC
AAAATATCTAGATTTTTCAAGAATTTTCTGAAATTTCTACCCTTACAATG
CATCTCTACTTTTTCCGACCCTTACAGTGCATTTTAAACATATTGGAAAA
GGTACCCTTAGGACCCGCACATACCTGTCGGGCCTTTTGCCCAGCTGCCC
CCCCCCGGGGGTATAATACTGTGGTATATCAGGAATTATTCAATGGCTGT
TTTTGCCTACGGGTATATAATAATCATTTTTATTGATCTTCAATTTTAGA
GAACTTTCGGGAGTGATTTTGGTTCAACTTTGGTTGGCAATCATACTATC
TGTGTCCATATATCACGAGAAGTAAAAGTTTTTTTCTTTTTTACAGAAAA
ACTTTTTTCCGAAGGCATGGTATCGTGCTTTTTAATAGTCAGAATTGCAA
TTTTTTACAGACTTCTACAACCACAGGTAGTATGGCAGCACTGAGCTGTT
AGAGTATGCCAGGAGCCTAGCTTTCTATAATATATGCAACTTTTAGTATA
ATGATTGAGTTCAAAGGTGTATAAGCTCAGAATGTTTCAAATATAAAACT
TTTCGGAATACCAGGTTTCATTTAAAAGACAGCTATCTTTTTCGTGGCGT
CTGGCTGGTATCTAACCTCGGTTTCAATGCAAGAATTAGGGTTTGTTTTT
AAGTTTCTAACTATATCCTTCCTTTTAAGGATAAGGGAATGTTGTGGTCG
TAGCAGGGAATCGAACAACGTTCAAATGGGTAAAAGATTCCTCCATTTTT
TTGTCAAACAACTTTTTATGTTGGGTACTGTCTCTTATGAAATTCCGCAG
AGGTTAATACATGTTTTTTTATAAACCTACCAAAATTTGAAATCAGGCTC
GGAGTTACTTAACTGAAGCTCTCGACAGCTTGATAAGGCTAAAAAATGCC
GAAAATCCGTAAAATCACAGCTAAAAACAGCCAAAATACATTTTTTCGTA
AGGTGATGCTTGACCTATGCATAAATTTTTGCCATATCCGCGAGCCCAGA
TATGCTTATAAGTAATGCAATGCTTACAAAAAACATGTATTCACCGGGGA
GCAAAAGAAGTCGTTTTCTTTATTTGGTATACCTTATTGGGGAAAAAATG
TCGGAGTTTTAGTTAATTTTAGTCGGGTTTTTTTTTCGTCGGAGAAAAAT
TTCGTCACCTAGAGGCATATTCGTCACTTTTCCCCGACCAAAATTTCAAA
TTTGTCACTTTCACCCGACTAAACTGTCCAAAAGAAATGGTTTCCTTCAC
TAGCTCGAAAATGTATCTTGTAATTCGACGTAAAGCACTAATTTCGGTAA
ATAAAGGTGTAAAAAATTAGATTTGAATTTGGTTGCGGTATTATAAAATT
TCGGGTAAATGTTTTAGTCGGGGATAAAAAAATTGGCTACAAGTTTTGGT
CGGGTGATGAAATGTCGGGGAAATATTTCGTCACCCCCTCAAAATTTTCG
TCAATTTCCCCCGACATTTTTCCCCCGATGAGGTATAACAAAAGGGCTGA
TTGGCAGGGTTTAGGTTCTCTCGAGTAACAAACCCTAATTGTCAAGGTTG
TAGATTTGAGCCCGACGCTAATAAAGTTGGGCTTAAAAGTTAAAACCGAG
GTTAGATTTTAATGACCCAAATGATAAATATGGCTTTTAGGCTCTAATTC
AAAACAAATTTTTTCTCAATTCATCTTTTCAGCATAAACAACTTGTTATT
ATATGAATGGTTTATTATCATGTCTGGTGTGGCAGTTCCGCTGTTTTGCA
CTTTCTTTCTATACGAAAATATCGACCAATCGACATTACCGGAACATTGT
AAAGGAATTCTGCAACGATGGGTGACATGAGGTCTGTGGATGACAATGTT
CTTGAAGGAAAGTTGCTAAATGAAACAAACACAAACTAAAATTTCAGCAA
CTTTTAGTATTGACTGGAACAGCTGAAGGAATAGTCATTAGGTTTAACAC
TTAGCAATCAATCGTAGACTCTCAGAAATATTTTGGTGTAATACACTTAT
CAACACTGATCTTATCAACCATGAGACAATATTTTGAGAAAGGCAAGACA
GCGTCCGGGGGGAGTGATAAAAAGGACACTCTTTTCTAGTATTTTTCAAA
AAGGCTGATTCCGTTACCTAAACTTTAGTGATTTCAGGAAGGGCAGCGTC
TGATAACCGAACGCTAAAAAGCATGGAAAATGGTCTGACCGGCATGGCGT
TCTTTAAAGTCTGTCTCAAAATAACAACCATCTTCAATTTTATTTGATAC
TATTCCACCCCTGAATAAAATTCAACAAGATTAAAATTGTTATTTAATTC
CAATTCTGTCCAAACACTCGCACCCAACCCTCTCTCAAAATAAAGCGTGG
CAAAGATTTATAACAGTATTTACAGGTTGACTTCGTTCGAATCCCCTGAA
CTCGAATCCAGTCTTATTTTGCATTTAGTGCAGTAAACAAGATTGTAAAG
AACATGTAAAGTAATTTTTTTTTTAATTTTTAGTATATTTTACCAAAAAA
ATAAGAAATTTATACAAAATTCATTAGTAACAACAAACACATTTCCCTCC
GAAATTCTGGCACAAGACCTGTTTTTCTACACAATACTCCGAAATTCTGG
TACAAGACCTGTTTTTCTACACAATACTCCGAAATTCTGGTACAAGGCCT
GTTTTTCTACACAATACACGCTTTTTATAAGAATATTCATGATGAAATTA
CACCATAATGAAATTTGGCAACTGAACCAAAAAATGCCGATTTTTAGAGC
GTTTTACCTGCAAATTTGCCAATTATCTTCACACAAAAATGCCATATCTT
TGCTCAAGGTATGTATAACATGCTAGAATTAGGCTGGGTCGGATCCTAAC
CTTAGAATATACCGTAAGAATATTTTAGGATGGTTTTTCCCAAAAATGAA
AAAACACCATTCTTATAAAAAAAACGTGTACTAAATTATGTGTATGTGAA
ATTGAGATAATGCTAATAATTTAAAATAAAAATCGATCAAAAATTCACCA
TGAATCTACTACCTACCTGTAAACACTTTGAAAAAAGAGACTTTATCAAC
ATACTTAGTTGCCTCATTTTTTGAAACTTGAACTTATCGAATCTAATTTT
TTTATCGTTTTAAAACAGAATAATAATCTAACTTAACTTAGGCGGAACCA
AATTCTGTGGCTTAGGTTCACCTTATAACCTATGGTCAAGGCAGCGTTTT
TATGATCTCAGACGAAAAATGGACTACAGTTCTGAACATTCTAAAAATAA
AACAGCCAATTTTACGATCAAAATGATATGATAATACCGGAAACCAAATT
AGTTTGTTTTTTCTGATCATTTTTTGTAATGTTTGTACTGTGGATGATGA
TTAAAAATGTTTTTCTCTTGGCTTCAAAATGAACGACAATCAAAGCAATC
CCACTTTCTATCGATTGAATGAAATATTAGGTAATGAGATGTTCGGCAGA
TTGATATTCTTCGGAAGGTTCGGTAAATTCGGGCTCATGTTTTTTACAGC
GTTGAGAGCTTTCGTCGTGTTGGCTGATATACCACCCTAAGGTTGAAAGA
AAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032144XLOC_032144Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050747-exon-scaffold_185-1575043694:23256..23367TCONS_00050747-exon-scaffold_185-1575043694:23256..23367Clytia hemisphaericaexon
TCONS_00050747-exon-scaffold_185-1575043694:18665..19385TCONS_00050747-exon-scaffold_185-1575043694:18665..19385Clytia hemisphaericaexon
TCONS_00050747-exon-scaffold_185-1510915933:23256..23367TCONS_00050747-exon-scaffold_185-1510915933:23256..23367Clytia hemisphaericaexon
TCONS_00050747-exon-scaffold_185-1510915933:18665..19385TCONS_00050747-exon-scaffold_185-1510915933:18665..19385Clytia hemisphaericaexon
TCONS_00050747-exon-scaffold_185-1491911889:23256..23367TCONS_00050747-exon-scaffold_185-1491911889:23256..23367Clytia hemisphaericaexon
TCONS_00050747-exon-scaffold_185-1491911889:18665..19385TCONS_00050747-exon-scaffold_185-1491911889:18665..19385Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_185supercontigscaffold_185:18665..23367 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.88852	1.18748	1.49158	1.06944	0.740394	0.283279	1.16748	0.32388	0.530796	0.64236	0	0.13465	0.133722	0	0.241447	0.534014	0.741415	0.0740805	0	0.253978	1.16422	0.809584	2.47438	0.61308	0	0	2.12883	1.68655	3.76757	1.16766
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050747 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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