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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050693 ID=TCONS_00050693|Name=TCONS_00050693|organism=Clytia hemisphaerica|type=transcript|length=3675bpRun BLAST on NCBI transcript from alignment at scaffold_183:52325..70434+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050693 ID=TCONS_00050693|Name=TCONS_00050693|organism=Clytia hemisphaerica|type=transcript|length=18110bp|location=Sequence derived from alignment at scaffold_183:52325..70434+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00050693 vs. Swiss-Prot (Human)
Match: ANK1 (Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3) HSP 1 Score: 99.3673 bits (246), Expect = 1.033e-20 Identity = 85/268 (31.72%), Postives = 137/268 (51.12%), Query Frame = 1
Query: 2239 VEGLVELLHNEQIL-IDERLSNIYPITALDYAASLGYDEIVQVLLDHNANPYVMDSQSYSPLHNAADGGHVKVVRKLLHHGMDVNLQTSSQQFTALHLAALKGHENLVTVLLEH--------PDIDISLR-DKNHCNAFQLATSPKIQKLLARDQEHLYLAVINQDSTKLEELLALPDMSVNATFKDELTLLHIVAERDSTNIAEMLNLTTIAKILIEKGVDINAKGGKDQHTALHAACKSSSRQIAELLLQCGADVTIKDRNGRTPF 3012
V+ +VELLH E IL + N TAL AA G DE+V+ L+++ AN + ++PL+ AA H++VV+ LL +G + N+ T FT L +A +GHEN+V L+ + P + I+ R D A L P L L++A + ++ + +LL SVN T ++ +T LHI + R + + ++L+++G I K KD+ T LH A ++ +I+E+LL GA + K +NG +P
Sbjct: 58 VKMVVELLHKEIILETTTKKGN----TALHIAALAGQDEVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVAT-EDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAA-HYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGN---------VIMVRLLLDRGAQIETK-TKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPI 309 HSP 2 Score: 91.2781 bits (225), Expect = 2.760e-18 Identity = 77/249 (30.92%), Postives = 110/249 (44.18%), Query Frame = 3
Query: 1062 FSLLHVAVDYGCQEIVKCLLERKISVNLQCGQYSFTPLHIASKHGNETMVRFLIEHGAELNIKDSYNETAIE-KTENFRMRHFCLLLQ-----DFSTACGFGDLH--------NVQRIFKEEPLCLDAKGYRHFTPLHVASFKGHFDIVNFLLQKGARVNEVDSQYCRTALHIATLYDQVEVIEILVTYGADHTLSDVFGYQAIHFCQSQKAVE----LLTKG--------QVSSPLNMAIQIGDHELA 1730
F+ LH+A Y + + LL R SVN Q TPLHIAS+ GN MVR L++ GA++ K T + N +R +LL T G +H + R+ + +D H TPLHVA+ GH + LL KGA+ N + T LHIA + V V+E+L+ GA G +H + LL +G +V +PL+MA + G E+A
Sbjct: 207 FTPLHIAAHYENLNVAQLLLNRGASVNF-TPQNGITPLHIASRRGNVIMVRLLLDRGAQIETKTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYDAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNS-RALNGFTPLHIACKKNHVRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 453 The following BLAST results are available for this feature:
BLAST of TCONS_00050693 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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