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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050677 ID=TCONS_00050677|Name=TCONS_00050677|organism=Clytia hemisphaerica|type=transcript|length=819bp
AAATCTAACTTGTATTGTGAAATTTACCGCAtcattaaacttaaaaaaat
ctaCCTAAACCTACAACAAAATAAACACGGCAAAATCAATAGTAAAGATC
TTTGATGGGaatagttcaaaacaaatgCTCGAACACTACCACTATCCAAG
CTTAGTGTACAAACTGTTACTTAGTACACATCCATCGACCCAATGCCACA
CACCTAAATAACCATTTCCATCCGAAGACAAAtccaataaaatgacaaat
ccGATACCAATATTGTAAGGGATGCATAAGAAGCTCAGTTTCGACCCTTG
TTGCTGTACCAAGAAGCTTCTTTGAGACTTAACtaaagttttaattttga
atggaaagaaatCCTTTCTTCATTGAGAGCCTAAgtacaaaatatataaa
aatattcaaagataCATGCCATATTTCTGTCGGTACATTGCAAAACGTTC
TTCCACATTTTGAATCCCATCCCAACGCTGAAACTCAGCTGTTTTCAATG
CTGTGAAGGCCTTCATGAATACATCACCAAGCTCATTAACGAAGACTTGG
TCCTCCTTTAAGCATTCTATTGCTTTTTCCAAGCTTTCAGGAACCTTTTC
AGCTCCTAGTGGTAACTCAGCAGCCTCAAGTATGTTTCCAAAGAAGGCTT
CTGATTTGAGGGGAAGCTTCCGATTGATACCGTCCATTCCTGCAATTAAG
CATCCAGTAGTGACCAAGTACGGATTACACCCTGCTCCGGGCAGCCGGTC
TTCGATGTAGGTGCATGAAGGACTGTAATTCTTTATACGGAAACGCACAC
CGCGGTGATCGTAGCCCCA Run BLAST on NCBI protein sequence of TCONS_00050677-protein >TCONS_00050677-protein ID=TCONS_00050677-protein|Name=TCONS_00050677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
WGYDHRGVRFRIKNYSPSCTYIEDRLPGAGCNPYLVTTGCLIAGMDGINR
KLPLKSEAFFGNILEAAELPLGAEKVPESLEKAIECLKEDQVFVNELGDV
FMKAFTALKTAEFQRWDGIQNVEERFAMYRQKYGMYL Run BLAST on NCBI transcript from alignment at scaffold_182:18283..19101 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050677 ID=TCONS_00050677|Name=TCONS_00050677|organism=Clytia hemisphaerica|type=transcript|length=819bp|location=Sequence derived from alignment at scaffold_182:18283..19101 (Clytia hemisphaerica)
TGGGGCTACGATCACCGCGGTGTGCGTTTCCGTATAAAGAATTACAGTCC
TTCATGCACCTACATCGAAGACCGGCTGCCCGGAGCAGGGTGTAATCCGT
ACTTGGTCACTACTGGATGCTTAATTGCAGGAATGGACGGTATCAATCGG
AAGCTTCCCCTCAAATCAGAAGCCTTCTTTGGAAACATACTTGAGGCTGC
TGAGTTACCACTAGGAGCTGAAAAGGTTCCTGAAAGCTTGGAAAAAGCAA
TAGAATGCTTAAAGGAGGACCAAGTCTTCGTTAATGAGCTTGGTGATGTA
TTCATGAAGGCCTTCACAGCATTGAAAACAGCTGAGTTTCAGCGTTGGGA
TGGGATTCAAAATGTGGAAGAACGTTTTGCAATGTACCGACAGAAATATG
GCATGtatctttgaatatttttatatattttgtacTTAGGCTCTCAATGA
AGAAAGGatttctttccattcaaaattaaaactttaGTTAAGTCTCAAAG
AAGCTTCTTGGTACAGCAACAAGGGTCGAAACTGAGCTTCTTATGCATCC
CTTACAATATTGGTATCggatttgtcattttattggaTTTGTCTTCGGAT
GGAAATGGTTATTTAGGTGTGTGGCATTGGGTCGATGGATGTGTACTAAG
TAACAGTTTGTACACTAAGCTTGGATAGTGGTAGTGTTCGAGcatttgtt
ttgaactattCCCATCAAAGATCTTTACTATTGATTTTGCCGTGTTTATT
TTGTTGTAGGTTTAGGtagatttttttaagtttaatgaTGCGGTAAATTT
CACAATACAAGTTAGATTT Coding sequence (CDS) from alignment at scaffold_182:18283..19101 >TCONS_00050677 ID=TCONS_00050677|Name=TCONS_00050677|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_182:18283..19101 (Clytia hemisphaerica)
TGGGGCTACGATCACCGCGGTGTGCGTTTCCGTATAAAGAATTACAGTCC
TTCATGCACCTACATCGAAGACCGGCTGCCCGGAGCAGGGTGTAATCCGT
ACTTGGTCACTACTGGATGCTTAATTGCAGGAATGGACGGTATCAATCGG
AAGCTTCCCCTCAAATCAGAAGCCTTCTTTGGAAACATACTTGAGGCTGC
TGAGTTACCACTAGGAGCTGAAAAGGTTCCTGAAAGCTTGGAAAAAGCAA
TAGAATGCTTAAAGGAGGACCAAGTCTTCGTTAATGAGCTTGGTGATGTA
TTCATGAAGGCCTTCACAGCATTGAAAACAGCTGAGTTTCAGCGTTGGGA
TGGGATTCAAAATGTGGAAGAACGTTTTGCAATGTACCGACAGAAATATG
GCATGtatctttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050677-exon-scaffold_182-1491911889:18283..19101 | TCONS_00050677-exon-scaffold_182-1491911889:18283..19101 | Clytia hemisphaerica | exon |
| TCONS_00050677-exon-scaffold_182-1510915933:18283..19101 | TCONS_00050677-exon-scaffold_182-1510915933:18283..19101 | Clytia hemisphaerica | exon |
| TCONS_00050677-exon-scaffold_182-1575043694:18283..19101 | TCONS_00050677-exon-scaffold_182-1575043694:18283..19101 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_182 | supercontig | scaffold_182:18283..19101 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008146 | Gln_synth_cat_dom |
| IPR014746 | Gln_synth/guanido_kin_cat_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004356 | glutamate-ammonia ligase activity |
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006807 | nitrogen compound metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006807 |
nitrogen compound metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0004356 |
glutamate-ammonia ligase activity |
Blast
The following BLAST results are available for this feature:
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