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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050625 ID=TCONS_00050625|Name=TCONS_00050625|organism=Clytia hemisphaerica|type=transcript|length=675bp
TGCATCCCCAAATTAGTTTTGATATATCAAAACTTATCAGAGGGGATGTG
TGCAGCCTAGAGGTTTTGCTATTTAAAAAATTCGAGCTCATTTTATAGAT
AGTTGGGCTCTCTACTACAGTACTCGAGAGGTCATCAACACTGAAACCGT
ATCGCACCCACAAGATGGATACCTCCAATGGAACGATGACGAGGAGATTA
ATAAAGTTGAATTCAACTTTGCAACTGAAGAAGTGGTCGAGTACTTTGAT
ATTGAACTACCTATAGAATCTGAGAGAAAGAAGGATTTCTTACTGGTTCT
TTCATATACTGACGTGTATGGTGAAGAAGTATCCTTGCTTTTAACTGACC
ATTTTGTGAAACAAGATGGAAACACATTTCGATATGTGTTCAATAGTCCA
ACAACTCTCAAAGGACAAGTGTTCATTACCCCACTTCTTCTTGAGGAATC
AAGAAAAGTGAAACTTAAGACCGCTTTCTATACCAGGAACACTGCTCAAG
CTACTCACCGATGGTCTTGGCACGACGATAAGTTACTCGATACTCAAAAG
TATCATCATTTTGATACCAGCAACGAAGTCCAACGGTCGCTGCCGTTCCC
CTTTAGCCATTGTATGCTATCCATCGGCCCACTTGGTTGCAAAACTGGTT
TCACACTTCAAGCCCATTTTAATGG Run BLAST on NCBI transcript from alignment at scaffold_18:269238..271406- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050625 ID=TCONS_00050625|Name=TCONS_00050625|organism=Clytia hemisphaerica|type=transcript|length=2169bp|location=Sequence derived from alignment at scaffold_18:269238..271406- (Clytia hemisphaerica)
TGCATCCCCAAATTAGTTTTGATATATCAAAACTTATCAGAGGGGATGTG
TGCAGCCTAGAGGTTTTGCTATTTAAAAAATTCGAGCTCATTTTATAGAT
AGTTGGGCTCTCTACTACAGTACTCGAGAGGTCATCAACACTGAAACCGT
ATCGCACCCACAAGATGGATACCTCCAATGGAACGATGACGAGGAGATTA
ATAAAGTTGAATTCAACTTTGCAACTGAAGAAGTGGTCGAGTACTTTGAT
ATTGAACTACCTATAGAATCTGAGAGAAAGAAGGATTTCTTACTGGTTCT
TTCATATACTGACGTGTATGGTGAAGAAGTAAGTTTTTCGATCCCCTCCT
TACAAATTGTTAAAGCCTAAAAATGCACTGAACATGTTCTTATTTTGACC
CTTTTGTGAAGATTTTCTTATATAGTTTGTTTTTATAAAAAAACGTCTAT
TGATTTGTTTTCTGTTTAATTGGATAAATCAGAGAGTGATTTCATACCGG
GTTACTTAGGTTAAAATTTGGAAAAAAGTAGAGCAAAGTCTATCGTGCAT
CAAAAGCCTGTAACTACTTGGTCAATTTAATAACGCTTTACTCTTAGGTT
CCAAATAAACGGGGCCCCCCGTTTATTTGCAAGAGCAGCCACCAGCAGAT
CTTTTTGAAATATCTGTTCTTTTTTTCCAGAAGAGTAAATTTTATGGATA
AAACTAGGAGAGACTTTCCTCAAAACACCCAGGTAAAATCCAGGGGTCGC
CTTAAAAACATCTGTACCTAAAATCCAGGAGCACATTTTAAGGAAAAACA
CATACAATTTTCCAGCGGACAATCATCTGTTCAGCCAGATTCTTTTTTCC
AGGGAGCTTTATAATTTTCTTAAAAGGTCCTATTTTCTAGGAGCATTTTA
ACTTTCTTAGAGAATAGCATAATATTTCTAGAGAACAGATATATACTTTT
TCCAGGAGTACCATTTTTCTCCCAGAACAGAATGATATAACCCGGGAGAG
CCGAGGATACTGAACAGATAGTTTTTTCCAGCAGAAAGGGACCTCAAGAA
CAGATATTTCATACTTCCTAGCAGGTGGCTGCTCTTGTATTTGGAACCTA
AGAGTATCTCAATATTTAAAATTGACTATCATTCTTCTAATAAATGTAAT
TAATTGTCAACTTTCTTTTGAATATGGATAACCCTGTAGAAACATCCCTT
GATAAATTTTCATGTAAACCAAATAACTTTGTCCTAACTTTCTTTATAAT
TCGTACGATAAGATGATAATAATAATATAAAATAATTCTTTTGTATAGGT
ATCCTTGCTTTTAACTGACCATTTTGTGAAACAAGATGGAAACACATTTC
GATATGTGTTCAATAGTCCAACAACTCTCAAAGGACAAGTGTTCATTACC
CCACTTCTTCTTGAGGAATCAAGAAAAGTGAAACTTAAGACCGCTTTCTA
TACCAGGAACACTGCTCAAGGTAAAATCTTTAAACTCTTCTAATATCTAT
AATTTAACTTACAGTATCTCCTATCATTTCTATACTCAGCGCTTTCTTAA
GCAAAAGAAAGAACAACTTACTTTCTTTCTTTCAGTGTTCAAATTTTTTC
CGTCTTACTAGACGGATTTCCGTCTTTGTGAAGTTAATAAAGATTTATTT
CTGTCTCAAAATTTTGTATAATTTGCCGAAATTTCAAGCTAAAATTGCTA
TTTAAAAACCTTGGTTGAGCACAAATTTTGGGAAATTCTTTTGTTTATTC
TGCTTTGCCTTTCTATATCATAAAAGTGAATATCTTTAAAATAGTCTGAA
TCATGGACATCTATAAAACTGATTAATATTATAAATAAGGAGCATAAATC
AGTTCGAGGCGGGGTTAGAGGAGATTCCAGCAGCTTTATATATTTATCAC
AATAGTTTGAAAATACGTGTCTGTTTTCTGTATGAAAAGTGTTTTTGGTG
AAACATGCTAAAAATTATAAGTAAGCTTCTCTTCTTTTCAACAGCTACTC
ACCGATGGTCTTGGCACGACGATAAGTTACTCGATACTCAAAAGTATCAT
CATTTTGATACCAGCAACGAAGTCCAACGGTCGCTGCCGTTCCCCTTTAG
CCATTGTATGCTATCCATCGGCCCACTTGGTTGCAAAACTGGTTTCACAC
TTCAAGCCCATTTTAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050625-exon-scaffold_18-1575043694:271079..271406 | TCONS_00050625-exon-scaffold_18-1575043694:271079..271406 | Clytia hemisphaerica | exon |
| TCONS_00050625-exon-scaffold_18-1575043694:269937..270108 | TCONS_00050625-exon-scaffold_18-1575043694:269937..270108 | Clytia hemisphaerica | exon |
| TCONS_00050625-exon-scaffold_18-1575043694:269238..269412 | TCONS_00050625-exon-scaffold_18-1575043694:269238..269412 | Clytia hemisphaerica | exon |
| TCONS_00050625-exon-scaffold_18-1510915933:271079..271406 | TCONS_00050625-exon-scaffold_18-1510915933:271079..271406 | Clytia hemisphaerica | exon |
| TCONS_00050625-exon-scaffold_18-1510915933:269937..270108 | TCONS_00050625-exon-scaffold_18-1510915933:269937..270108 | Clytia hemisphaerica | exon |
| TCONS_00050625-exon-scaffold_18-1510915933:269238..269412 | TCONS_00050625-exon-scaffold_18-1510915933:269238..269412 | Clytia hemisphaerica | exon |
| TCONS_00050625-exon-scaffold_18-1491911889:271079..271406 | TCONS_00050625-exon-scaffold_18-1491911889:271079..271406 | Clytia hemisphaerica | exon |
| TCONS_00050625-exon-scaffold_18-1491911889:269937..270108 | TCONS_00050625-exon-scaffold_18-1491911889:269937..270108 | Clytia hemisphaerica | exon |
| TCONS_00050625-exon-scaffold_18-1491911889:269238..269412 | TCONS_00050625-exon-scaffold_18-1491911889:269238..269412 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:269238..271406 - |
Blast
The following BLAST results are available for this feature:
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