TCONS_00050596 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050596
Unique NameTCONS_00050596
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length199

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050596 ID=TCONS_00050596|Name=TCONS_00050596|organism=Clytia hemisphaerica|type=transcript|length=199bp
AGTCAAATAAATATATAGAATAATCACACCAAGCGtgtctattttttatt
tgtcaatCACCTCATGGGCAAAAACTAGACTACACTGTAAGGTTATTCGA
CTTGgtgaaaaatgcactgtaagggtgtattttTCGGGAAAACCACTGCG
ATTTttagcccgcacataccgtcagtccaaaATCCGACTACACCCCCTG
Run BLAST on NCBI

transcript from alignment at scaffold_179:540248..540446

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050596 ID=TCONS_00050596|Name=TCONS_00050596|organism=Clytia hemisphaerica|type=transcript|length=199bp|location=Sequence derived from alignment at scaffold_179:540248..540446 (Clytia hemisphaerica)
CAGGGGGTGTAGTCGGATtttggactgacggtatgtgcgggctaaAAATC
GCAGTGGTTTTCCCGAaaaatacacccttacagtgcatttttcacCAAGT
CGAATAACCTTACAGTGTAGTCTAGTTTTTGCCCATGAGGTGattgacaa
ataaaaaatagacaCGCTTGGTGTGATTATTCTATATATTTATTTGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032050XLOC_032050Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050596-exon-scaffold_179-1491911889:540248..540446TCONS_00050596-exon-scaffold_179-1491911889:540248..540446Clytia hemisphaericaexon
TCONS_00050596-exon-scaffold_179-1510915933:540248..540446TCONS_00050596-exon-scaffold_179-1510915933:540248..540446Clytia hemisphaericaexon
TCONS_00050596-exon-scaffold_179-1575043694:540248..540446TCONS_00050596-exon-scaffold_179-1575043694:540248..540446Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:540248..540446 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	36.4542	30.607	13.0327	24.4022	2.84742	1.7635	5.13508	3.3756	4.49454	5.83453	2.87807	0	2.53661	1.29997	0	1.87936	0	2.3903	0	0	0	14.5701	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050596 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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