TCONS_00050593 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050593
Unique NameTCONS_00050593
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050593 ID=TCONS_00050593|Name=TCONS_00050593|organism=Clytia hemisphaerica|type=transcript|length=308bp
CTAAAATTTACCttttactcttttgtgcttaattgtagggggatTACTCT
CGGGtccctaataaacgtacatgtacgtttattaattttgacaaaaaatt
gtgGCCAATTTCAAGTGCCTACTTTTGTCTGTGATGCTAAATATCCATCT
TCGACTATTGAGGCTTTATCTACTCGCTGAAAGAACGCAAAATACCCATT
ATTTACCCCCTAACCTCAGTGAAAAGATCATTCAATTAGGTTCTTATGCC
TCCATTTTTGGCCCTGTATGTTTATTCGctactgtacgtttattagggaC
CCGAGagt
Run BLAST on NCBI

transcript from alignment at scaffold_179:442918..443225

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050593 ID=TCONS_00050593|Name=TCONS_00050593|organism=Clytia hemisphaerica|type=transcript|length=308bp|location=Sequence derived from alignment at scaffold_179:442918..443225 (Clytia hemisphaerica)
actCTCGGGtccctaataaacgtacagtagCGAATAAACATACAGGGCCA
AAAATGGAGGCATAAGAACCTAATTGAATGATCTTTTCACTGAGGTTAGG
GGGTAAATAATGGGTATTTTGCGTTCTTTCAGCGAGTAGATAAAGCCTCA
ATAGTCGAAGATGGATATTTAGCATCACAGACAAAAGTAGGCACTTGAAA
TTGGCcacaattttttgtcaaaattaataaacgtacatgtacgtttatta
gggaCCCGAGAGTAatccccctacaattaagcacaaaagagtaaaaGGTA
AATTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032047XLOC_032047Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050593-exon-scaffold_179-1491911889:442918..443225TCONS_00050593-exon-scaffold_179-1491911889:442918..443225Clytia hemisphaericaexon
TCONS_00050593-exon-scaffold_179-1510915933:442918..443225TCONS_00050593-exon-scaffold_179-1510915933:442918..443225Clytia hemisphaericaexon
TCONS_00050593-exon-scaffold_179-1575043694:442918..443225TCONS_00050593-exon-scaffold_179-1575043694:442918..443225Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:442918..443225 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.358164	0	0	0	0.483004	1.90838	0.920951	3.87983	0.301818	0.37385	1.0886	2.62388	1.19102	1.23688	0	1.30953	0	0.301021	2.28441	1.19524	1.73146	0.506729	0	1.12006	0	0	0.491113	0.524129	0.397534	0.810048
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050593 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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