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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050590 ID=TCONS_00050590|Name=TCONS_00050590|organism=Clytia hemisphaerica|type=transcript|length=1164bp GTTCTGTTAACTTATTTATTCCTTCACATAATTCAAAGATTATATTAAGT GATTTATGcaaaataaatatgaaaaataaaaagtattgaaaataatACCT GTAAGTAAAAAAAAgcaattaatatttttaaaaataaaagtagttAAAAA AACGTGTTATTAAAAATGCATTTTCATGAGTCAAATAGAATTGCACAAAA TATTATTCCGGAGGAGGAGGATAGCTGGCGGGTATGTGCCGCAGgatttc gaccctcggacccttagaggaactaaaaagaaggaaaattttttatggat tttaCGACCCTAATTANaaaaaaaaacgaattaaaaaaatgttattttct cattctcagcctcagcattatattcttagatgtttcttagtttttaagca ttctgagcctcatgtttcttaaaagtgtgtttcttaaaaaaaaaacgtgt agttatCTTAAAACAATAATCCCATACCAAAGGtcactaaaaacaaaaaa ataatcgcTTGACAGCCCATCATTTTAACAAAACGTTCAATCCATCCACC ATCAATCATCACACGATTGGTCAGTTTTCATAAAACATGGTACATAACAT TTCCATTTAAACGGTACCGAAAACCAATACGACAAACGATACCTGCGTTT CAACAAGCCAATATATTTCTCGGGCACGGCAACTTGAATACCAACAAATT CCAAGATAGTTCGTTTTCCAATAAACTCTTTAGGGATATATTCTAACTTA TGACTAATCTTGGTTATTAGACCATCTTTGACCCAGCTTGGGTAATATTT GGTGTAAGTATTTTCATGCTCAGTCCAACGCACGAGGTCAACAGATGCGG ATCCATAAGTTGCTATCATGGTGTTAGCAGATACTCCTCGGTTATTTATA TCACGTAAAGCCTCACTTACATTAGGATCATCCTTAAGGAAAGAGACATC CCCGTCTCCATCCCAAGGGATAATACCATGGTAACGAACTGCACCTAGCA ACGAGCCATAATCTAACCAATAGAAAACCTTATTTTTCTCAAATGATGAT ATAATGATTTTCAGTAAAAtttcaagatcttttttcgattGTTCACTGAG ATAGCAGTCTGTATTATACTGGTCAGTAATTGATGGGAGTAATTTGAAAT GAACCCATGCTANN Run BLAST on NCBI protein sequence of TCONS_00050590-protein >TCONS_00050590-protein ID=TCONS_00050590-protein|Name=TCONS_00050590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
XAWVHFKLLPSITDQYNTDCYLSEQSKKDLEILLKIIISSFEKNKVFYWL DYGSLLGAVRYHGIIPWDGDGDVSFLKDDPNVSEALRDINNRGVSANTMI ATYGSASVDLVRWTEHENTYTKYYPSWVKDGLITKISHKLEYIPKEFIGK RTILEFVGIQVAVPEKYIGLLKRRYRLSYWFSVPFKWKCYVPCFMKTDQS CDD Run BLAST on NCBI transcript from alignment at scaffold_179:402533..403696 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050590 ID=TCONS_00050590|Name=TCONS_00050590|organism=Clytia hemisphaerica|type=transcript|length=1164bp|location=Sequence derived from alignment at scaffold_179:402533..403696 (Clytia hemisphaerica) NNTAGCATGGGTTCATTTCAAATTACTCCCATCAATTACTGACCAGTATA
ATACAGACTGCTATCTCAGTGAACaatcgaaaaaagatcttgaaaTTTTA
CTGAAAATCATTATATCATCATTTGAGAAAAATAAGGTTTTCTATTGGTT
AGATTATGGCTCGTTGCTAGGTGCAGTTCGTTACCATGGTATTATCCCTT
GGGATGGAGACGGGGATGTCTCTTTCCTTAAGGATGATCCTAATGTAAGT
GAGGCTTTACGTGATATAAATAACCGAGGAGTATCTGCTAACACCATGAT
AGCAACTTATGGATCCGCATCTGTTGACCTCGTGCGTTGGACTGAGCATG
AAAATACTTACACCAAATATTACCCAAGCTGGGTCAAAGATGGTCTAATA
ACCAAGATTAGTCATAAGTTAGAATATATCCCTAAAGAGTTTATTGGAAA
ACGAACTATCTTGGAATTTGTTGGTATTCAAGTTGCCGTGCCCGAGAAAT
ATATTGGCTTGTTGAAACGCAGGTATCGTTTGTCGTATTGGTTTTCGGTA
CCGTTTAAATGGAAATGTTATGTACCATGTTTTATGAAAACTGACCAATC
GTGTGATGATTGATGGTGGATGGATTGAACGTTTTGTTAAAATGATGGGC
TGTCAAgcgattatttttttgtttttagtgaCCTTTGGTATGGGATTATT
GTTTTAAGataactacacgttttttttttaagaaacacacttttaagaaa
catgaggctcagaatgcttaaaaactaagaaacatctaagaatataatgc
tgaggctgagaatgagaaaataacatttttttaattcgtttttttttNTA
ATTAGGGTCGtaaaatccataaaaaattttccttctttttagttcctcta
agggtccgagggtcgaaatcCTGCGGCACATACCCGCCAGCTATCCTCCT
CCTCCGGAATAATATTTTGTGCAATTCTATTTGACTCATGAAAATGCATT
TTTAATAACACGTTTTTTTaactacttttatttttaaaaatattaattgc
TTTTTTTTACTTACAGGTattattttcaatactttttatttttcatattt
attttgCATAAATCACTTAATATAATCTTTGAATTATGTGAAGGAATAAA
TAAGTTAACAGAAC Coding sequence (CDS) from alignment at scaffold_179:402533..403696 >TCONS_00050590 ID=TCONS_00050590|Name=TCONS_00050590|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_179:402533..403696 (Clytia hemisphaerica) NTAGCATGGGTTCATTTCAAATTACTCCCATCAATTACTGACCAGTATAA TACAGACTGCTATCTCAGTGAACaatcgaaaaaagatcttgaaaTTTTAC TGAAAATCATTATATCATCATTTGAGAAAAATAAGGTTTTCTATTGGTTA GATTATGGCTCGTTGCTAGGTGCAGTTCGTTACCATGGTATTATCCCTTG GGATGGAGACGGGGATGTCTCTTTCCTTAAGGATGATCCTAATGTAAGTG AGGCTTTACGTGATATAAATAACCGAGGAGTATCTGCTAACACCATGATA GCAACTTATGGATCCGCATCTGTTGACCTCGTGCGTTGGACTGAGCATGA AAATACTTACACCAAATATTACCCAAGCTGGGTCAAAGATGGTCTAATAA CCAAGATTAGTCATAAGTTAGAATATATCCCTAAAGAGTTTATTGGAAAA CGAACTATCTTGGAATTTGTTGGTATTCAAGTTGCCGTGCCCGAGAAATA TATTGGCTTGTTGAAACGCAGGTATCGTTTGTCGTATTGGTTTTCGGTAC CGTTTAAATGGAAATGTTATGTACCATGTTTTATGAAAACTGACCAATCG TGTGATGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00050590-exon-scaffold_179-1491911889:402533..403696 | TCONS_00050590-exon-scaffold_179-1491911889:402533..403696 | Clytia hemisphaerica | exon |
TCONS_00050590-exon-scaffold_179-1510915933:402533..403696 | TCONS_00050590-exon-scaffold_179-1510915933:402533..403696 | Clytia hemisphaerica | exon |
TCONS_00050590-exon-scaffold_179-1575043694:402533..403696 | TCONS_00050590-exon-scaffold_179-1575043694:402533..403696 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_179 | supercontig | scaffold_179:402533..403696 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR007074 | LicD_fam |
Blast
The following BLAST results are available for this feature:
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