|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050590 ID=TCONS_00050590|Name=TCONS_00050590|organism=Clytia hemisphaerica|type=transcript|length=1164bp
GTTCTGTTAACTTATTTATTCCTTCACATAATTCAAAGATTATATTAAGT
GATTTATGcaaaataaatatgaaaaataaaaagtattgaaaataatACCT
GTAAGTAAAAAAAAgcaattaatatttttaaaaataaaagtagttAAAAA
AACGTGTTATTAAAAATGCATTTTCATGAGTCAAATAGAATTGCACAAAA
TATTATTCCGGAGGAGGAGGATAGCTGGCGGGTATGTGCCGCAGgatttc
gaccctcggacccttagaggaactaaaaagaaggaaaattttttatggat
tttaCGACCCTAATTANaaaaaaaaacgaattaaaaaaatgttattttct
cattctcagcctcagcattatattcttagatgtttcttagtttttaagca
ttctgagcctcatgtttcttaaaagtgtgtttcttaaaaaaaaaacgtgt
agttatCTTAAAACAATAATCCCATACCAAAGGtcactaaaaacaaaaaa
ataatcgcTTGACAGCCCATCATTTTAACAAAACGTTCAATCCATCCACC
ATCAATCATCACACGATTGGTCAGTTTTCATAAAACATGGTACATAACAT
TTCCATTTAAACGGTACCGAAAACCAATACGACAAACGATACCTGCGTTT
CAACAAGCCAATATATTTCTCGGGCACGGCAACTTGAATACCAACAAATT
CCAAGATAGTTCGTTTTCCAATAAACTCTTTAGGGATATATTCTAACTTA
TGACTAATCTTGGTTATTAGACCATCTTTGACCCAGCTTGGGTAATATTT
GGTGTAAGTATTTTCATGCTCAGTCCAACGCACGAGGTCAACAGATGCGG
ATCCATAAGTTGCTATCATGGTGTTAGCAGATACTCCTCGGTTATTTATA
TCACGTAAAGCCTCACTTACATTAGGATCATCCTTAAGGAAAGAGACATC
CCCGTCTCCATCCCAAGGGATAATACCATGGTAACGAACTGCACCTAGCA
ACGAGCCATAATCTAACCAATAGAAAACCTTATTTTTCTCAAATGATGAT
ATAATGATTTTCAGTAAAAtttcaagatcttttttcgattGTTCACTGAG
ATAGCAGTCTGTATTATACTGGTCAGTAATTGATGGGAGTAATTTGAAAT
GAACCCATGCTANN Run BLAST on NCBI protein sequence of TCONS_00050590-protein >TCONS_00050590-protein ID=TCONS_00050590-protein|Name=TCONS_00050590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
XAWVHFKLLPSITDQYNTDCYLSEQSKKDLEILLKIIISSFEKNKVFYWL
DYGSLLGAVRYHGIIPWDGDGDVSFLKDDPNVSEALRDINNRGVSANTMI
ATYGSASVDLVRWTEHENTYTKYYPSWVKDGLITKISHKLEYIPKEFIGK
RTILEFVGIQVAVPEKYIGLLKRRYRLSYWFSVPFKWKCYVPCFMKTDQS
CDD Run BLAST on NCBI transcript from alignment at scaffold_179:402533..403696 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050590 ID=TCONS_00050590|Name=TCONS_00050590|organism=Clytia hemisphaerica|type=transcript|length=1164bp|location=Sequence derived from alignment at scaffold_179:402533..403696 (Clytia hemisphaerica)
NNTAGCATGGGTTCATTTCAAATTACTCCCATCAATTACTGACCAGTATA
ATACAGACTGCTATCTCAGTGAACaatcgaaaaaagatcttgaaaTTTTA
CTGAAAATCATTATATCATCATTTGAGAAAAATAAGGTTTTCTATTGGTT
AGATTATGGCTCGTTGCTAGGTGCAGTTCGTTACCATGGTATTATCCCTT
GGGATGGAGACGGGGATGTCTCTTTCCTTAAGGATGATCCTAATGTAAGT
GAGGCTTTACGTGATATAAATAACCGAGGAGTATCTGCTAACACCATGAT
AGCAACTTATGGATCCGCATCTGTTGACCTCGTGCGTTGGACTGAGCATG
AAAATACTTACACCAAATATTACCCAAGCTGGGTCAAAGATGGTCTAATA
ACCAAGATTAGTCATAAGTTAGAATATATCCCTAAAGAGTTTATTGGAAA
ACGAACTATCTTGGAATTTGTTGGTATTCAAGTTGCCGTGCCCGAGAAAT
ATATTGGCTTGTTGAAACGCAGGTATCGTTTGTCGTATTGGTTTTCGGTA
CCGTTTAAATGGAAATGTTATGTACCATGTTTTATGAAAACTGACCAATC
GTGTGATGATTGATGGTGGATGGATTGAACGTTTTGTTAAAATGATGGGC
TGTCAAgcgattatttttttgtttttagtgaCCTTTGGTATGGGATTATT
GTTTTAAGataactacacgttttttttttaagaaacacacttttaagaaa
catgaggctcagaatgcttaaaaactaagaaacatctaagaatataatgc
tgaggctgagaatgagaaaataacatttttttaattcgtttttttttNTA
ATTAGGGTCGtaaaatccataaaaaattttccttctttttagttcctcta
agggtccgagggtcgaaatcCTGCGGCACATACCCGCCAGCTATCCTCCT
CCTCCGGAATAATATTTTGTGCAATTCTATTTGACTCATGAAAATGCATT
TTTAATAACACGTTTTTTTaactacttttatttttaaaaatattaattgc
TTTTTTTTACTTACAGGTattattttcaatactttttatttttcatattt
attttgCATAAATCACTTAATATAATCTTTGAATTATGTGAAGGAATAAA
TAAGTTAACAGAAC Coding sequence (CDS) from alignment at scaffold_179:402533..403696 >TCONS_00050590 ID=TCONS_00050590|Name=TCONS_00050590|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_179:402533..403696 (Clytia hemisphaerica)
NTAGCATGGGTTCATTTCAAATTACTCCCATCAATTACTGACCAGTATAA
TACAGACTGCTATCTCAGTGAACaatcgaaaaaagatcttgaaaTTTTAC
TGAAAATCATTATATCATCATTTGAGAAAAATAAGGTTTTCTATTGGTTA
GATTATGGCTCGTTGCTAGGTGCAGTTCGTTACCATGGTATTATCCCTTG
GGATGGAGACGGGGATGTCTCTTTCCTTAAGGATGATCCTAATGTAAGTG
AGGCTTTACGTGATATAAATAACCGAGGAGTATCTGCTAACACCATGATA
GCAACTTATGGATCCGCATCTGTTGACCTCGTGCGTTGGACTGAGCATGA
AAATACTTACACCAAATATTACCCAAGCTGGGTCAAAGATGGTCTAATAA
CCAAGATTAGTCATAAGTTAGAATATATCCCTAAAGAGTTTATTGGAAAA
CGAACTATCTTGGAATTTGTTGGTATTCAAGTTGCCGTGCCCGAGAAATA
TATTGGCTTGTTGAAACGCAGGTATCGTTTGTCGTATTGGTTTTCGGTAC
CGTTTAAATGGAAATGTTATGTACCATGTTTTATGAAAACTGACCAATCG
TGTGATGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050590-exon-scaffold_179-1491911889:402533..403696 | TCONS_00050590-exon-scaffold_179-1491911889:402533..403696 | Clytia hemisphaerica | exon |
| TCONS_00050590-exon-scaffold_179-1510915933:402533..403696 | TCONS_00050590-exon-scaffold_179-1510915933:402533..403696 | Clytia hemisphaerica | exon |
| TCONS_00050590-exon-scaffold_179-1575043694:402533..403696 | TCONS_00050590-exon-scaffold_179-1575043694:402533..403696 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_179 | supercontig | scaffold_179:402533..403696 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007074 | LicD_fam |
Blast
The following BLAST results are available for this feature:
|
