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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050579 ID=TCONS_00050579|Name=TCONS_00050579|organism=Clytia hemisphaerica|type=transcript|length=738bp
CATATGTTCTTTCATCAATGTGATTGAGCGCCAATACAACACGATATCCA
TGGTAACAAAACTCATATCAAGTGGTTGGATACCCACCAACGCAACCAGC
CAATTACCACTGAAAATGCCAGAAATGAGAACcatgcagttcaatatggc
tagCATAGCGATGAAAATAATCCCAATGGTTTGTCGTTTGAAAGTCATGA
TTTCATTGTATCTGTTTGTGTATTTGACACGACAGTATCTGTCCAGTGCG
ACCATTCCAACGAAAAATCCAGTCATGTGGGGAAAGATGTAGAGAATGTA
TTGGCAGAGAACTTGAATCTCACAACTTATGTAAGAACGAGCTTTTAAGA
TGAAATACGTCAGCATTTGTTGACTGACGAATCCTACCAGGAAATCAGAT
ATGGACATGTACATGGTCAATCTCAATGATGTGTTTGTATATTGTTTCGT
GATAACAATCAACCATACTACGATGAAGTTCACGACCGCGTTCAGTACTG
CTATAAAGAGATTGGTACCCAGTAAAATATCCAACTGTTGATCACTGAGC
AAGTGTAATTTTTCGAACAGTGTCCGACATTCAATACCACTGTCCGTTGA
ATTCATCGTGTCTTGCGATTACTACTTCTCTCGTAAGTGTGTTCTCGGAT
TTCGGAGTTCCACTGATCCAAAACAGTCTTTGCAACATGTAAAATTAAAC
GAAAAATCTCTGGAATAGTTTATGATCCAGACTGATCC Run BLAST on NCBI protein sequence of TCONS_00050579-protein >TCONS_00050579-protein ID=TCONS_00050579-protein|Name=TCONS_00050579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
MNSTDSGIECRTLFEKLHLLSDQQLDILLGTNLFIAVLNAVVNFIVVWLI
VITKQYTNTSLRLTMYMSISDFLVGFVSQQMLTYFILKARSYISCEIQVL
CQYILYIFPHMTGFFVGMVALDRYCRVKYTNRYNEIMTFKRQTIGIIFIA
MLAILNCMVLISGIFSGNWLVALVGIQPLDMSFVTMDIVLYWRSITLMKE
HM Run BLAST on NCBI transcript from alignment at scaffold_179:207580..208317 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050579 ID=TCONS_00050579|Name=TCONS_00050579|organism=Clytia hemisphaerica|type=transcript|length=738bp|location=Sequence derived from alignment at scaffold_179:207580..208317 (Clytia hemisphaerica)
GGATCAGTCTGGATCATAAACTATTCCAGAGATTTTTCGTTTAATTTTAC
ATGTTGCAAAGACTGTTTTGGATCAGTGGAACTCCGAAATCCGAGAACAC
ACTTACGAGAGAAGTAGTAATCGCAAGACACGATGAATTCAACGGACAGT
GGTATTGAATGTCGGACACTGTTCGAAAAATTACACTTGCTCAGTGATCA
ACAGTTGGATATTTTACTGGGTACCAATCTCTTTATAGCAGTACTGAACG
CGGTCGTGAACTTCATCGTAGTATGGTTGATTGTTATCACGAAACAATAT
ACAAACACATCATTGAGATTGACCATGTACATGTCCATATCTGATTTCCT
GGTAGGATTCGTCAGTCAACAAATGCTGACGTATTTCATCTTAAAAGCTC
GTTCTTACATAAGTTGTGAGATTCAAGTTCTCTGCCAATACATTCTCTAC
ATCTTTCCCCACATGACTGGATTTTTCGTTGGAATGGTCGCACTGGACAG
ATACTGTCGTGTCAAATACACAAACAGATACAATGAAATCATGACTTTCA
AACGACAAACCATTGGGATTATTTTCATCGCTATGctagccatattgaac
tgcatgGTTCTCATTTCTGGCATTTTCAGTGGTAATTGGCTGGTTGCGTT
GGTGGGTATCCAACCACTTGATATGAGTTTTGTTACCATGGATATCGTGT
TGTATTGGCGCTCAATCACATTGATGAAAGAACATATG Coding sequence (CDS) from alignment at scaffold_179:207580..208317 >TCONS_00050579 ID=TCONS_00050579|Name=TCONS_00050579|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_179:207580..208317 (Clytia hemisphaerica)
ATGAATTCAACGGACAGTGGTATTGAATGTCGGACACTGTTCGAAAAATT
ACACTTGCTCAGTGATCAACAGTTGGATATTTTACTGGGTACCAATCTCT
TTATAGCAGTACTGAACGCGGTCGTGAACTTCATCGTAGTATGGTTGATT
GTTATCACGAAACAATATACAAACACATCATTGAGATTGACCATGTACAT
GTCCATATCTGATTTCCTGGTAGGATTCGTCAGTCAACAAATGCTGACGT
ATTTCATCTTAAAAGCTCGTTCTTACATAAGTTGTGAGATTCAAGTTCTC
TGCCAATACATTCTCTACATCTTTCCCCACATGACTGGATTTTTCGTTGG
AATGGTCGCACTGGACAGATACTGTCGTGTCAAATACACAAACAGATACA
ATGAAATCATGACTTTCAAACGACAAACCATTGGGATTATTTTCATCGCT
ATGctagccatattgaactgcatgGTTCTCATTTCTGGCATTTTCAGTGG
TAATTGGCTGGTTGCGTTGGTGGGTATCCAACCACTTGATATGAGTTTTG
TTACCATGGATATCGTGTTGTATTGGCGCTCAATCACATTGATGAAAGAA
CATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050579-exon-scaffold_179-1491911889:207580..208317 | TCONS_00050579-exon-scaffold_179-1491911889:207580..208317 | Clytia hemisphaerica | exon |
| TCONS_00050579-exon-scaffold_179-1510915933:207580..208317 | TCONS_00050579-exon-scaffold_179-1510915933:207580..208317 | Clytia hemisphaerica | exon |
| TCONS_00050579-exon-scaffold_179-1575043694:207580..208317 | TCONS_00050579-exon-scaffold_179-1575043694:207580..208317 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_179 | supercontig | scaffold_179:207580..208317 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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