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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050574 ID=TCONS_00050574|Name=TCONS_00050574|organism=Clytia hemisphaerica|type=transcript|length=1590bp
ACATTGGCAGGTAAAGCGAGCATACTCTAGATTCGATATTTGAGTGAGAC
CttatacaaaaatatttgttttgcgCTTAATACTTACAGCTTAATTTTAA
CACCATAGGTACCTGGATTAATGAAATCTGCATTGCTTATACTGTTGTCT
CCAGCATCGGAACCTTCAGACATTCAGAATTTTCCTGTGAGACTTATGGC
AATCAAGCAAGTTTCAGATAATGCCAAGGTTAAATGTGAAGAGGTCGTGA
AAGAATTTATGCATGTCATTGAAGTCATTGACGAAGTCTTTATGGGGTTG
GTTGTCCAACAGATCGATGTAAAATCTGCTCTAGAGAAACTAGAACTCAA
TATTGCTAATACTAAGAGAGAAATCAAAAGATCGGATCAGGTTACAAAAG
CAAACGANCTCAATATTGCTAATACTAAGAGAGAAATCAAAAGATCGGAT
CAGGTTACAAAAGCAAACGAAAAGGCATTAAAAGAAATGGAAGAGCAAGT
CAAGAGTGCAAAGGAAGATTGGAAAGATGCAATGGCTTGTATGCCAAGTG
CTCAAGATTTGACGATGGCATCTGTGACTGAAAGCTTGACAAGCATCGTT
AACACTGGAGCAAATGCTGCCATTCAAATGGGAACCCAATATGTAAACAT
GATGACAATGAGCGCCATGGGCGGAATGGATGGTATGCCTCATCAACAAA
TGGGTGGTATGCAAAATCCTCAGCAAGTACCAAACCAAAATGTGCAGTAT
CCAGCACAAGGCACACATGTAGAAAACCCTAAGGTTGATTTCTTGCGAGA
TAAATACATGGTAAAGAACNTGATAACATTTCCAATTAGAGATCACTACA
TATTTAATCTTTTTATAAACTTGACTTGTAGATACCACTaagattttctg
taaaatataTGCCTTCGGTCGGTAACATAAACTTCTTGAAATCTGGGTCT
agtgtaatatcaaaatataatgATATGAATCATTAATAATCAATTCTGAA
AAGGTGACTTTCGCTTCAGGGGAGAAGGGAGAGTTAGATTCATGACAAGT
TCTCAACTTTTCAAACCTCTACTTGTACCGCAGAAAATTGCAGATttaat
tgtttgtttgtttttttttcgatccGACTGGGGGCACATAATTAAAACCG
TATATGGTAGATCAAATTTTTAGACCATTAGAATAGTCACCTATGACGCT
GAAGCTTGTCTCGCGCCCGCTACGTTTGCTTAGCAtagttagattttttt
tctcgattattatttttatcatcattattatCGACTAATTTCCCCCATTT
GTGATTACGAAATGAATGTCCTACAATCTATCAAATACCTTGAGGGTCCC
CTCAAGGAATAAGACTTCAACAACAATAAATCTGATCAGCTCCCGCCTTA
AATTTTTTCTAATAAGTattattttgtttgttattttgttttgataattt
agTTCAATGTTTGAAATTTGCACAGTACCGAGTACAATTTGAAATGTAAT
TTAGATTTTCGCCATAATATACCTGATGGCTCAGAAAATATAGGAAACTC
TCTGAACGATAAAAATAGATCCAATATTGTACGAGTAAAA Run BLAST on NCBI protein sequence of TCONS_00050574-protein >TCONS_00050574-protein ID=TCONS_00050574-protein|Name=TCONS_00050574-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
MKSALLILLSPASEPSDIQNFPVRLMAIKQVSDNAKVKCEEVVKEFMHVI
EVIDEVFMGLVVQQIDVKSALEKLELNIANTKREIKRSDQVTKANXLNIA
NTKREIKRSDQVTKANEKALKEMEEQVKSAKEDWKDAMACMPSAQDLTMA
SVTESLTSIVNTGANAAIQMGTQYVNMMTMSAMGGMDGMPHQQMGGMQNP
QQVPNQNVQYPAQGTHVENPKVDFLRDKYMVKNXITFPIRDHYIFNLFIN
LTCRYH Run BLAST on NCBI transcript from alignment at scaffold_179:121068..122657 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050574 ID=TCONS_00050574|Name=TCONS_00050574|organism=Clytia hemisphaerica|type=transcript|length=1590bp|location=Sequence derived from alignment at scaffold_179:121068..122657 (Clytia hemisphaerica)
TTTTACTCGTACAATATTGGATCTATTTTTATCGTTCAGAGAGTTTCCTA
TATTTTCTGAGCCATCAGGTATATTATGGCGAAAATCTAAATTACATTTC
AAATTGTACTCGGTACTGTGCAAATTTCAAACATTGAActaaattatcaa
aacaaaataacaaacaaaataatACTTATTAGAAAAAATTTAAGGCGGGA
GCTGATCAGATTTATTGTTGTTGAAGTCTTATTCCTTGAGGGGACCCTCA
AGGTATTTGATAGATTGTAGGACATTCATTTCGTAATCACAAATGGGGGA
AATTAGTCGataataatgatgataaaaataataatcgagaaaaaaaatct
aactaTGCTAAGCAAACGTAGCGGGCGCGAGACAAGCTTCAGCGTCATAG
GTGACTATTCTAATGGTCTAAAAATTTGATCTACCATATACGGTTTTAAT
TATGTGCCCCCAGTCggatcgaaaaaaaaacaaacaaacaattaaATCTG
CAATTTTCTGCGGTACAAGTAGAGGTTTGAAAAGTTGAGAACTTGTCATG
AATCTAACTCTCCCTTCTCCCCTGAAGCGAAAGTCACCTTTTCAGAATTG
ATTATTAATGATTCATATcattatattttgatattacactAGACCCAGAT
TTCAAGAAGTTTATGTTACCGACCGAAGGCAtatattttacagaaaatct
tAGTGGTATCTACAAGTCAAGTTTATAAAAAGATTAAATATGTAGTGATC
TCTAATTGGAAATGTTATCANGTTCTTTACCATGTATTTATCTCGCAAGA
AATCAACCTTAGGGTTTTCTACATGTGTGCCTTGTGCTGGATACTGCACA
TTTTGGTTTGGTACTTGCTGAGGATTTTGCATACCACCCATTTGTTGATG
AGGCATACCATCCATTCCGCCCATGGCGCTCATTGTCATCATGTTTACAT
ATTGGGTTCCCATTTGAATGGCAGCATTTGCTCCAGTGTTAACGATGCTT
GTCAAGCTTTCAGTCACAGATGCCATCGTCAAATCTTGAGCACTTGGCAT
ACAAGCCATTGCATCTTTCCAATCTTCCTTTGCACTCTTGACTTGCTCTT
CCATTTCTTTTAATGCCTTTTCGTTTGCTTTTGTAACCTGATCCGATCTT
TTGATTTCTCTCTTAGTATTAGCAATATTGAGNTCGTTTGCTTTTGTAAC
CTGATCCGATCTTTTGATTTCTCTCTTAGTATTAGCAATATTGAGTTCTA
GTTTCTCTAGAGCAGATTTTACATCGATCTGTTGGACAACCAACCCCATA
AAGACTTCGTCAATGACTTCAATGACATGCATAAATTCTTTCACGACCTC
TTCACATTTAACCTTGGCATTATCTGAAACTTGCTTGATTGCCATAAGTC
TCACAGGAAAATTCTGAATGTCTGAAGGTTCCGATGCTGGAGACAACAGT
ATAAGCAATGCAGATTTCATTAATCCAGGTACCTATGGTGTTAAAATTAA
GCTGTAAGTATTAAGcgcaaaacaaatatttttgtataaGGTCTCACTCA
AATATCGAATCTAGAGTATGCTCGCTTTACCTGCCAATGT Coding sequence (CDS) from alignment at scaffold_179:121068..122657 >TCONS_00050574 ID=TCONS_00050574|Name=TCONS_00050574|organism=Clytia hemisphaerica|type=CDS|length=771bp|location=Sequence derived from alignment at scaffold_179:121068..122657 (Clytia hemisphaerica)
ttAGTGGTATCTACAAGTCAAGTTTATAAAAAGATTAAATATGTAGTGAT
CTCTAATTGGAAATGTTATCANGTTCTTTACCATGTATTTATCTCGCAAG
AAATCAACCTTAGGGTTTTCTACATGTGTGCCTTGTGCTGGATACTGCAC
ATTTTGGTTTGGTACTTGCTGAGGATTTTGCATACCACCCATTTGTTGAT
GAGGCATACCATCCATTCCGCCCATGGCGCTCATTGTCATCATGTTTACA
TATTGGGTTCCCATTTGAATGGCAGCATTTGCTCCAGTGTTAACGATGCT
TGTCAAGCTTTCAGTCACAGATGCCATCGTCAAATCTTGAGCACTTGGCA
TACAAGCCATTGCATCTTTCCAATCTTCCTTTGCACTCTTGACTTGCTCT
TCCATTTCTTTTAATGCCTTTTCGTTTGCTTTTGTAACCTGATCCGATCT
TTTGATTTCTCTCTTAGTATTAGCAATATTGAGNTCGTTTGCTTTTGTAA
CCTGATCCGATCTTTTGATTTCTCTCTTAGTATTAGCAATATTGAGTTCT
AGTTTCTCTAGAGCAGATTTTACATCGATCTGTTGGACAACCAACCCCAT
AAAGACTTCGTCAATGACTTCAATGACATGCATAAATTCTTTCACGACCT
CTTCACATTTAACCTTGGCATTATCTGAAACTTGCTTGATTGCCATAAGT
CTCACAGGAAAATTCTGAATGTCTGAAGGTTCCGATGCTGGAGACAACAG
TATAAGCAATGCAGATTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050574-exon-scaffold_179-1491911889:121068..122657 | TCONS_00050574-exon-scaffold_179-1491911889:121068..122657 | Clytia hemisphaerica | exon |
| TCONS_00050574-exon-scaffold_179-1510915933:121068..122657 | TCONS_00050574-exon-scaffold_179-1510915933:121068..122657 | Clytia hemisphaerica | exon |
| TCONS_00050574-exon-scaffold_179-1575043694:121068..122657 | TCONS_00050574-exon-scaffold_179-1575043694:121068..122657 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_179 | supercontig | scaffold_179:121068..122657 . |
Blast
The following BLAST results are available for this feature:
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