TCONS_00050553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050553
Unique NameTCONS_00050553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1727

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050553 ID=TCONS_00050553|Name=TCONS_00050553|organism=Clytia hemisphaerica|type=transcript|length=1727bp
TGGTTCATCTAGGGTGTCTTTTATATATGCCTTATTACATTACTTATTCT
CTAACCGCATATCAAGTcgataaaaaaaacatataaaaaaagccACTATA
AAGCTGTTTCATTAACATTCATAATTTTTCAtaacaaatcatttttaaat
atattttaaaaggTGACGACGCTCTTGGTGTTACAAAATTGATCGTTAAG
ATAAGCCTTGTGCTAGATTTATACAGAATTTGTTGGCGATTTTATGATGA
TTAAGAATTAGCGCAAAATAGACTTAAGTAGAGGTTAAGTGACCTAAACT
AGATCTAAGAACTTTTGCTAATTTACTGGAGGATTGTAAAGGACAAGGCG
TCAATTTATATTCCATTCGATGGAGAATTTACCAAGAGTAAACATGGAAA
TTATTTCATCCAACCTAAAAGATGACGAAATATGTGATTTTCAAAGGCTT
GAAAAATGTgaCGAAGAGTCACAGCCTGTTAGCGgaatgaaagaagaaaa
tgagAAGAAAAGCTATGTTTGTGACGCAGGAGCTATTTtACTCTCCTTTA
CGATATTGATTGGTGCTTTTGCAATCCCCATCGCTATGATTGTTATTGGC
ACTGGTGGTTTGAATGAATGTCCAGCTGAAAAGATGATTCCCATATACCT
GGTTGTCGGGGGAATCACCTGTTTACTTATCCTCCCCCTTACCATCATTA
TGAAACTGTTTCAATCATGTGTCAACAAAGAAGGCCCTATGGGAATCCTC
TTCAAATGTTACGATGGCCTCGTCATGAATTGTCTAGCCGTGTTCTTCCT
TGCTTGGTTTATCTGTGGTAATGTTTGGGTTTACCGCACTTCGGATGCGG
AATTCACCAACACAGCGTCACCACAATATTGTGATGAACTGACATACAAG
TTTGCATATTGGGTGATCATTGCTACTTACGTTTGTTCAGTATTGAGTTG
TATTTTGACGGCGTGcatcagaaaacgcgtgtcgtACGATGATGTGAAAT
AAATACGGACACCCACATGACAAACCTAAGGCCTTAATTGGACTGGATTG
GGTTTGAATATACTAAGAGGGGCCTGAACCCCTTTGAATTTACGCGGCGA
CGAATAACGCCAAATGACGGTGTTCGTTCGTTTGCATTCAAATGTTTGAA
GTCGTTACCAGTGCCTAACGATCTTGAACGCTTCCACTCTTCATGGTGTC
GTTAACGCAAGGATTAATAGATGTTTGACTTCATTTCAAGATGTTTTGTG
TAAATAATTCATAACTGctgtattttttatttggtatcatatctgtattt
tttatttcatctttTTGGTTACTCTATTTATCTATTTTTATTCAGACGGA
TATTaggtattttattttatactattttgtttttatatactATATCTCAA
AGTCGTTTTCAttaaaggaattatacggtgttatatacacccgactcgtc
tgaaaatgatgtcagcaaaattttaataaaagagtcctttcaaatttgta
aataaaaggaagaaaaaaatcttgctccacatttttctttattcattaca
aaagattctatttatttcaatctgctgaatcaacatacattataactatg
taaaaggtcaatggctttaatTTTTATGATATACGACTTATAAATACATT
GAATCAAATTGTATTGATCATAGACTTTTGAATCTATTTTGACAAAGGac
tttaattttgaaacatgactttttttc
Run BLAST on NCBI

transcript from alignment at scaffold_179:441618..445356-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050553 ID=TCONS_00050553|Name=TCONS_00050553|organism=Clytia hemisphaerica|type=transcript|length=3739bp|location=Sequence derived from alignment at scaffold_179:441618..445356- (Clytia hemisphaerica)
TGGTTCATCTAGGGTGTCTTTTATATATGCCTTATTACATTACTTATTCT
CTAACCGCATATCAAGTCGATAAAAAAAACATATAAAAAAAGCCACTATA
AAGCTGTTTCATTAACATTCATAATTTTTCATAACAAATCATTTTTAAAT
ATATTTTAAAAGGTGACGACGCTCTTGGTGTTACAAAATTGATCGTTAAG
ATAAGCCTTGTGCTAGATTTATACAGAATTTGTTGGCGATTTTATGATGA
TTAAGAATTAGCGCAAAATAGACTTAAGTAGAGGTTAAGTGACCTAAACT
AGATCTAAGAACTTTTGCTAATTTACTGGAGGATTGTAAAGGACAAGGCG
TCAATTTATATTCCATTCGATGGAGAATTTACCAAGAGTAAACATGGAAA
TTATTTCATCCAACCTAAAAGATGACGAAATATGTGATTTTCAAAGGCTT
GAAAAATGTGTAGGTACATCTCATCCTATCCTCTGGGCTATACAAGTCTC
CCCACTTACAGGCTAAAAGTCTGATAAATAAAGAGCGTTTTGACATTTTA
ACTAACCCTTGACTTCATAAGTCTAACTGGCACTTCATTTCTCATCATTG
TTTTCAAATTTTCTTTTTAGGACGAAGAGTCACAGCCTGTTAGCGGTATG
AATTGTTCTTCTTATTGAATTAAGAAATATAACTTCTGTCAAGCTTTCTT
CTTTCTATCAGCATGTTTAGTGGCAGATCAGTATATGGGCTTTTCCTGAA
AAAAGCTTTGAACATCATTGGGGGTGGAGGATATAACATTTTTTGGAAAT
TTACCCCCCGGACATTGTGACTTTTGACCCTCCGGACAGCAGGTCTAACC
CCCCGAGCAAGCATTAGTTTACCCCCCTGGACACTCAAAATTACCCTGAA
ACAGAGCAAAATTACCCCCAAATAGAGCAAGGTCAACCCCCAGACAAGGC
AAATTTAGTAGGTTTTTCACTACCCCCCGGACACTATATCCTCCACCCCC
ATGTACGAACATTTTCTGGAAGAGCCCATATGTACCTCCGCCTTATTTGG
TTTCATCAACAATGCAAACTGTACCAGAGAGCATGCATATTGAATAATTT
AGAATCTGCACCTTAAAAGCCCTCTTGGTCTGGTACAAACTGAAAATACA
ATTAATTCAAAGTTACTAGAGAAAATGAAAGTTATCCAATGTTTGCATCC
TCTCAAAGCTTGAAGATTTTTTAGTACGACGTGTAATATCATTGAAGTTG
AAAACATACTCTTAAACGTTTTGATAATTTTATTTTCAATTTCTTATAGG
AATGAAAGAAGAAAATGAGAAGAAAAGCTATGTTTGTGACGCAGGAGCTA
TTTGTATGTTGAGTTAATTTAATACCATTTTTAAGAACCTTTTCTGTTCC
ATTCTCAAATCAAAAAGTATTTAATCCTACAGTGTCATCGCTGTGTGAAA
AATTTTTCGAAAAATATTTATTTTTATACATCTCAAAACATTTTTCTTAT
TGACTTTCAGTGCTACTTTTTATTATACTTTTTGGTTAGGTATTTCTAAA
GTCGATTGGTTTTAAACTTCGGGCTATATCTACTTATCTGATATTCCGAT
GACGGATTGGCAGCCGCCCACACTAAAGCTCTAAAGAAGGGGGGATTTTT
CACCGGAGAGGAATGATAATCGGCCTTTGATGTGCCATATCCCCAGTCGG
GTTCAATTATCCTTGCTAGTAAACCCTAAATATATTTCGGTTGGGCCCGC
CAAAAAGTTGGCCATTTTTGTTGTCACGGTTACATATTATTTTGTGAAGT
CGTAAACAAATTTTTGTCATAATATAACTTTACTTCTCTTTCTTTTTTAG
TACTCTCCTTTACGATATTGATTGGTGCTTTTGCAATCCCCATCGCTATG
ATTGTTATTGGTAAGCTTAGCTGTTTTCTTTCTTAGCTGTAACATCGGCG
ATTTATCATACCTTATCGGAGGAAAAAGCCGATGGAACAATTTGGTCACC
CGGCTCTTGGAACGTTTTGGTCACTTTTGCACAACTGCTTTTTAAATAAG
CCGTTTTTAGCCACAAGGGAAACCTCAAGTTAGGTGTTTTATAAGTATAT
TTTGCAAGCAGTCNTTGAAAAATTCTTAAACCTAAAATTTACCTTTTACT
CTTTTGTGCTTAATTGTAGGGGGATTACTCTCGGGTCCCTAATAAACGTA
CATGTACGTTTATTAATTTTGACAAAAAATTGTGGCCAATTTCAAGTGCC
TACTTTTGTCTGTGATGCTAAATATCCATCTTCGACTATTGAGGCTTTAT
CTACTCGCTGAAAGAACGCAAAATACCCATTATTTACCCCCTAACCTCAG
TGAAAAGATCATTCAATTAGGTTCTTATGCCTCCATTTTTGGCCCTGTAT
GTTTATTCGCTACTGTACGTTTATTAGGGACCCGAGAGTAAAAATCTTTG
AAAAGTGTTAAAAAAATAACACTTGTTCAATTAGATTCCAACTTTTAATT
CGTTTTCCCATATTATATCCAACACTCTACTATATTTTGACATGTTGATA
CTGTTGTGCCTTTTACCTTCATTGCCTGCACTTTCACAAGTAATAATATT
TCAATTAAAGGCACTGGTGGTTTGAATGAATGTCCAGCTGAAAAGATGAT
TCCCATATACCTGGTTGTCGGGGGAATCACCTGTTTACTTATCCTCCCCC
TTACCATCATTATGAAACTGTTTCAATCATGTGTCAACAAAGAAGGCCCT
ATGGGAATCCTCTTCAAATGTTACGATGGCCTCGTCATGAATTGTCTAGC
CGTGTTCTTCCTTGCTTGGTTTATCTGTGGTAATGTTTGGGTTTACCGCA
CTTCGGATGCGGAATTCACCAACACAGCGTCACCACAATATTGTGATGAA
CTGACATACAAGTTTGCATATTGGGTGATCATTGCTACTTACGTTTGTTC
AGTATTGAGTTGTATTTTGACGGCGTGCATCAGAAAACGCGTGTCGTACG
ATGATGTGAAATAAATACGGACACCCACATGACAAACCTAAGGCCTTAAT
TGGACTGGATTGGGTTTGAATATACTAAGAGGGGCCTGAACCCCTTTGAA
TTTACGCGGCGACGAATAACGCCAAATGACGGTGTTCGTTCGTTTGCATT
CAAATGTTTGAAGTCGTTACCAGTGCCTAACGATCTTGAACGCTTCCACT
CTTCATGGTGTCGTTAACGCAAGGATTAATAGATGTTTGACTTCATTTCA
AGATGTTTTGTGTAAATAATTCATAACTGCTGTATTTTTTATTTGGTATC
ATATCTGTATTTTTTATTTCATCTTTTTGGTTACTCTATTTATCTATTTT
TATTCAGACGGATATTAGGTATTTTATTTTATACTATTTTGTTTTTATAT
ACTATATCTCAAAGTCGTTTTCATTAAAGGAATTATACGGTGTTATATAC
ACCCGACTCGTCTGAAAATGATGTCAGCAAAATTTTAATAAAAGAGTCCT
TTCAAATTTGTAAATAAAAGGAAGAAAAAAATCTTGCTCCACATTTTTCT
TTATTCATTACAAAAGATTCTATTTATTTCAATCTGCTGAATCAACATAC
ATTATAACTATGTAAAAGGTCAATGGCTTTAATTTTTATGATATACGACT
TATAAATACATTGAATCAAATTGTATTGATCATAGACTTTTGAATCTATT
TTGACAAAGGACTTTAATTTTGAAACATGACTTTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032015XLOC_032015Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050553-exon-scaffold_179-1575043694:444898..445356TCONS_00050553-exon-scaffold_179-1575043694:444898..445356Clytia hemisphaericaexon
TCONS_00050553-exon-scaffold_179-1575043694:444712..444736TCONS_00050553-exon-scaffold_179-1575043694:444712..444736Clytia hemisphaericaexon
TCONS_00050553-exon-scaffold_179-1575043694:444004..444057TCONS_00050553-exon-scaffold_179-1575043694:444004..444057Clytia hemisphaericaexon
TCONS_00050553-exon-scaffold_179-1575043694:443447..443506TCONS_00050553-exon-scaffold_179-1575043694:443447..443506Clytia hemisphaericaexon
TCONS_00050553-exon-scaffold_179-1575043694:441618..442746TCONS_00050553-exon-scaffold_179-1575043694:441618..442746Clytia hemisphaericaexon
TCONS_00050553-exon-scaffold_179-1510915933:444898..445356TCONS_00050553-exon-scaffold_179-1510915933:444898..445356Clytia hemisphaericaexon
TCONS_00050553-exon-scaffold_179-1510915933:444712..444736TCONS_00050553-exon-scaffold_179-1510915933:444712..444736Clytia hemisphaericaexon
TCONS_00050553-exon-scaffold_179-1510915933:444004..444057TCONS_00050553-exon-scaffold_179-1510915933:444004..444057Clytia hemisphaericaexon
TCONS_00050553-exon-scaffold_179-1510915933:443447..443506TCONS_00050553-exon-scaffold_179-1510915933:443447..443506Clytia hemisphaericaexon
TCONS_00050553-exon-scaffold_179-1510915933:441618..442746TCONS_00050553-exon-scaffold_179-1510915933:441618..442746Clytia hemisphaericaexon
TCONS_00050553-exon-scaffold_179-1491911889:444898..445356TCONS_00050553-exon-scaffold_179-1491911889:444898..445356Clytia hemisphaericaexon
TCONS_00050553-exon-scaffold_179-1491911889:444712..444736TCONS_00050553-exon-scaffold_179-1491911889:444712..444736Clytia hemisphaericaexon
TCONS_00050553-exon-scaffold_179-1491911889:444004..444057TCONS_00050553-exon-scaffold_179-1491911889:444004..444057Clytia hemisphaericaexon
TCONS_00050553-exon-scaffold_179-1491911889:443447..443506TCONS_00050553-exon-scaffold_179-1491911889:443447..443506Clytia hemisphaericaexon
TCONS_00050553-exon-scaffold_179-1491911889:441618..442746TCONS_00050553-exon-scaffold_179-1491911889:441618..442746Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:441618..445356 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.454297	0.170153	0.194552	0.11473	0	0.114492	0.13623	0.37417	0.396087	0.172463	0.22633	0.363599	1.69444	1.82686	0.525926	0.217741	9.66522	3.21999	0.650632	1.00188	46.0741	39.1076	0.646822	0.543069	0.230984	0.615105	0.124294	0.141858	0	0.221026
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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