TCONS_00050533 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050533
Unique NameTCONS_00050533
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1287

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050533 ID=TCONS_00050533|Name=TCONS_00050533|organism=Clytia hemisphaerica|type=transcript|length=1287bp
GAAATTTTCTCTGACATAAGGATTGTCTCAATAGAAGAAGACAAAgggga
aaaaataaaagataacTTTGCTAGAATAATTCTTGACAGCTACAATTCCA
AGAAAGATAAGGAGAATATCAAAAAGCTCAGGCAGAGCTACCCTCTACCT
GAAAACTGCAACACACCAGTGCCTAAACTAAACATTGAGTTATGGCAATT
ACTCAACAGTTTTCAACGAAAAAGTGATGNAACTGCAACATACCAGTGCC
TAAACTAAACATTGAGTTATGGCAATTACTCAACAGTTTTCAACGAAAAA
GTGATGTATCCATGGCTATGATCCAAAGAAATCTAATTTCTGCCCTCCCT
GGGgtaataaaaattattaaaaatgtacTCAATGAAGACGCAAACAAGAA
AGAGCTTGTCCAAATATCTTCGGATATAGTAGGCCTCATTGGTCAAGCAT
CCAAAGACATTGCCTTTAAGAggaaactttttataaaatcagCCCTTAAA
GATGAATTTAAAGACTTGGTATCCACAGGAGACAACAACAAACTAACTGA
aaaactttttggggaaaacctgagccaaaatattaaaaatttgaaattaa
gaaacaaactgaaaaacaataacaaaacatCAAGCTATAAACAGAAAAGC
CAGTTCTCAAAGCGAAACAGTGAATACAATCCTTACAACAAAAACACTCG
TCCAAATTCTTTTTTAGGCCGAGGCCGGGGGAGGATTTCCTCCTCCACAA
ACACCAACACAAAAAGAAACTAGAGCTAAAAACAAGTGCAACGAAGACCT
CAGATGTCAAGAAATCAACCTCAGTTGTCGAGAAATCAACCTCAGAAGTC
GAAAAATCAACCTCAGATGTTAACAATAAAGACTCATCAGAGGTTCAAGA
CTTACAACAAAAGTTTGGTAGGGAAAGTACTACAGAAGCTCAAAACCGAC
CAATGCCAAGGATTGATAGTGACACCAGATTGGCCAACACAAACTTGGTA
CACGACACTGACTTCAATGACGGTCTCAGAAACCATAACAATAACACCTG
GACAACAAgttctttttctttcagaagACCCTCAGCAGCTACACCCTCTC
TGGAGGAAACTGAAACTCAGAGCTTGCATAGTCTCAGGACTGAATACTTA
AAACAAGATCAGCAACTACATCCAAGTGCAAAACCAGTAACATGTCGTTG
ACTGAAATACTGAAGAAGGCGGGTTGGTCTAACGCAAGAACATTCGCCAA
GCACTACAACAAAATAATCGTCGATGACGTTAACCTC
Run BLAST on NCBI

protein sequence of TCONS_00050533-protein

>TCONS_00050533-protein ID=TCONS_00050533-protein|Name=TCONS_00050533-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MAMIQRNLISALPGVIKIIKNVLNEDANKKELVQISSDIVGLIGQASKDI
AFKRKLFIKSALKDEFKDLVSTGDNNKLTEKLFGENLSQNIKNLKLRNKL
KNNNKTSSYKQKSQFSKRNSEYNPYNKNTRPNSFLGRGRGRISSSTNTNT
KRN
Run BLAST on NCBI

transcript from alignment at scaffold_179:6705..10277-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050533 ID=TCONS_00050533|Name=TCONS_00050533|organism=Clytia hemisphaerica|type=transcript|length=3573bp|location=Sequence derived from alignment at scaffold_179:6705..10277- (Clytia hemisphaerica)
GAAATTTTCTCTGACATAAGGATTGTCTCAATAGAAGAAGACAAAGGGGA
AAAAATAAAAGATAACTTTGCTAGAATAATTCTTGACAGCTACAATTCCA
AGAAAGATAAGGAGAATATCAAAAAGCTCAGGCAGAGCTACCCTCTACCT
GAAAACTGCAACACACCAGTGCCTAAACTAAACATTGAGTTATGGCAATT
ACTCAACAGTTTTCAACGAAAAAGTGATGNAACTGCAACATACCAGTGCC
TAAACTAAACATTGAGTTATGGCAATTACTCAACAGTTTTCAACGAAAAA
GTGATGTATCCATGGCTATGATCCAAAGAAATCTAATTTCTGCCCTCCCT
GGGGTAATAAAAATTATTAAAAATGTACTCAATGAAGACGCAAACAAGAA
AGAGCTTGTCCAAATATCTTCGGATATAGTAGGCCTCATTGGTCAAGCAT
CCAAAGACATTGCCTTTAAGAGGAAACTTTTTATAAAATCAGCCCTTAAA
GATGAATTTAAAGACTTGGTATCCACAGGAGACAACAACAAACTAACTGA
AAAACTTTTTGGGGAAAACCTGAGCCAAAATATTAAAAATTTGAAATTAA
GAAACAAACTGAAAAACAATAACAAAACATCAAGCTATAAACAGAAAAGC
CAGTTCTCAAAGCGAAACAGTGAATACAATCCTTACAACAAAAACACTCG
TCCAAATTCTTTTTTAGGCCGAGGCCGGGGGAGGATTTCCTCCTCCACAA
ACACCAACACAAAAAGAAACTAGAGCTAAAAACAAGTGCAACGAAGACCT
CAGATGTCAAGAAATCAACCTCAGTTGTCGAGAAATCAACCTCAGAAGTC
GAAAAATCAACCTCAGATGTTAACAATAAAGACTCATCAGAGGTTCAAGA
CTTACAACAAAAGGTAAAAGAATCTATATCCCCTATATTTGTAAAACCTA
AAGATGATGGGGGTACAAGGATGATTCTGAACCTTAAAAGTTTAAATCAA
AATATTGAGTTTCGACACTTCAAAATGCTNTAAAGATGGTGGGGGTACAA
GGATGATTCTGAACCTTAAAAGTTTAAATCAAAATATTGAGTTTCAACAC
TAAAATGCAAACTATTAAAGATGCTTTACTTATGATATCAAAAGGGGACT
ACTTGACTTCAATAGACCTCAAAGATGCATATTACAGTGTTCCCATACAC
AGGGATTATCAATGTTTTCTAAAATTTTCATTTCAAGGAACCATCTATAA
ATTCACATGTTATCCCAATGGCCTTGGATCTTGTCCAAGAAAATTCACCA
AACTCACTGCAGTCCCTATGAGCAAACTGAGGACACTGGGAATACCAATA
TGTGGCTTTATAGATGACTTCCTACTTGCCAAAAATAAATTTATAGATTG
TATGCAATCTACACTTAAATCAGCACAAATGTTTACTGAAATAGGGTTTG
TAATACACCCAGAGAAGTCTCAGCTCACTCCATCTCAGAGGATTACTTAT
CAAGGCTTTGTAATAGACTCAACCAAAATGACTATAACTCTTACTGAAAA
AAGAACCAATGCTTTAAAAAGACACCTCAATATTCTACATAGCCTGTCAG
AACCTACTATTCGATATGTAGCAAAAGTCATTGGACATATAATTTCAGCT
CTACCAGCATCAAAGTATGGTGGTCTACTTTATAGAAACCTTGAAAAAGA
AGAGATTAAAGCTTTAAAACAAAACTGTGGTAATTTTGATGCAAAATGAC
ACTCTCAGACCTTAGCAAACAAGATTTGAAATGGTGGATCCAAAACATCA
ACAAAATTGAAAACTGGATCCAACCACCTCCCATTCAGAAAAAACTCTTC
ACTGACTCCTCAGATTTTGCATGGGGTATAATTTTTGAAAAACACAGAGT
TGGAGGTTCCTGGCATTATAAAGAACTAGGACTACATATAAATGTTAAAG
AAATGATTGCTATTCTCTTTGCTCTCAAAACATTCTCTGAAAATTTAAAA
GACAACCAAATATGATATATGTGACAATACAACTGCCATATGCATCATAA
ATAAAATGGGGAGCTGCAAAAGCAACACCTGCAACAAAATATGCCAAGAA
ATATGGTCTATTTGCAAAACAAACAATATCTGGGTCACATGCACCTATAT
ACCAGGTAAGGAAAATATAGAAGCCGATGAAGAATCCAGAAAAGACTATA
GTGACAGCAACTGGATGATAAATGACAACATTTTTGCTGATATTTGCAAA
AAATTAAACTACCCTCCTAAAACTGACTGTTTTGCAAACAGAATAAACAA
CAAAACAGATAATTATATCTCATACAGGCCAGACCCAAATGCCCAACATA
TAAAAGCATTTACTATTAACTGGTCAACCTTGAAAAACTCTTATTTCTTT
CCTCCCTTCAGTTTGGTAGGGAAAGTACTACAGAAGCTCAAAACCGACCA
ATGCCAAGGATTGATAGTGACACCAGATTGGCCAACACAAACTTGGTACA
CGACACTGACTTCAATGACGGTCTCAGAAACCATAACAATAACACCTGGA
CAACAAGTTCTTTTTCTTTCAGAAGACCCTCAGCAGCTACACCCTCTCTG
GAGGAAACTGAAACTCAGAGCTTGCATAGTCTCAGGACTGAATACTTAAA
ACAAGGTATGTCTAATACTACTACAAATATTATAATGAACACTTGGAGGG
AATCAACCCAAAAACAATATGAACCTGCTCTTAAAAAAAAAAAAATGGCT
TAAGTTTTGTGGGAACTCTATAGATCCATTTAATCCAAAGATAAACGAAG
GATTTGAATTTCTTTCTCAATTATACAAAGATGGGGCAAGTTTCCATGTT
ATTAGCAATGCTAGAAGTGCACTCTCTATTTTTGTAAAAACCTTCGAAAA
TGTTACATTTGGAAGGCTACCTATAGTAAAACGATACATAAAAGGTGTAT
TCGAAAGTCGACCAACCTTCCCAAAATCATGTATCACCTGGGATGTAAAT
ATTCTTTTTAACTATTTCAGATCCCTTCAAGATGTTGAAAATCTTAACCT
AAAACTCTTATCCTTAAAGCTAGCGAGCCTCATCGCTATTGCATCAGGAG
GACAAAGAGTTCAAACTCTTCAATCTTTGGACATTAAAAACATCAACCTC
TTAGCAGATAAAGTTATTATTCCCATAACATCAAAAATCAAACAGACTAG
ACCATCAAAACACATAGAACCCTTAGAGCTAAAAGGTTTCGCCCAAGAAC
CAAAACTCTGTCCAATCCTTCATTTAAAACACTATATAGCAGGAATTGAG
AAACTTAGAAATTCAGACAACCTTTTTGTTAGCTATATCAGACCACACAA
AACGGTTTCTAAAGATACTATATCTAGATAGTGCAAACAAATGATTGCCA
ACGCAGGCATTGACACTAATTTATATACTGCTCATTCCCACAGATCAGCA
ACTACATCCAAGTGCAAAACCAGTAACATGTCGTTGACTGAAATACTGAA
GAAGGCGGGTTGGTCTAACGCAAGAACATTCGCCAAGCACTACAACAAAA
TAATCGTCGATGACGTTAACCTC

Coding sequence (CDS) from alignment at scaffold_179:6705..10277-

>TCONS_00050533 ID=TCONS_00050533|Name=TCONS_00050533|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_179:6705..10277- (Clytia hemisphaerica)
ATGGCTATGATCCAAAGAAATCTAATTTCTGCCCTCCCTGGGGTAATAAA
AATTATTAAAAATGTACTCAATGAAGACGCAAACAAGAAAGAGCTTGTCC
AAATATCTTCGGATATAGTAGGCCTCATTGGTCAAGCATCCAAAGACATT
GCCTTTAAGAGGAAACTTTTTATAAAATCAGCCCTTAAAGATGAATTTAA
AGACTTGGTATCCACAGGAGACAACAACAAACTAACTGAAAAACTTTTTG
GGGAAAACCTGAGCCAAAATATTAAAAATTTGAAATTAAGAAACAAACTG
AAAAACAATAACAAAACATCAAGCTATAAACAGAAAAGCCAGTTCTCAAA
GCGAAACAGTGAATACAATCCTTACAACAAAAACACTCGTCCAAATTCTT
TTTTAGGCCGAGGCCGGGGGAGGATTTCCTCCTCCACAAACACCAACACA
AAAAGAAACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032003XLOC_032003Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050533-exon-scaffold_179-1575043694:9365..10277TCONS_00050533-exon-scaffold_179-1575043694:9365..10277Clytia hemisphaericaexon
TCONS_00050533-exon-scaffold_179-1575043694:7623..7866TCONS_00050533-exon-scaffold_179-1575043694:7623..7866Clytia hemisphaericaexon
TCONS_00050533-exon-scaffold_179-1575043694:6705..6834TCONS_00050533-exon-scaffold_179-1575043694:6705..6834Clytia hemisphaericaexon
TCONS_00050533-exon-scaffold_179-1510915933:9365..10277TCONS_00050533-exon-scaffold_179-1510915933:9365..10277Clytia hemisphaericaexon
TCONS_00050533-exon-scaffold_179-1510915933:7623..7866TCONS_00050533-exon-scaffold_179-1510915933:7623..7866Clytia hemisphaericaexon
TCONS_00050533-exon-scaffold_179-1510915933:6705..6834TCONS_00050533-exon-scaffold_179-1510915933:6705..6834Clytia hemisphaericaexon
TCONS_00050533-exon-scaffold_179-1491911889:9365..10277TCONS_00050533-exon-scaffold_179-1491911889:9365..10277Clytia hemisphaericaexon
TCONS_00050533-exon-scaffold_179-1491911889:7623..7866TCONS_00050533-exon-scaffold_179-1491911889:7623..7866Clytia hemisphaericaexon
TCONS_00050533-exon-scaffold_179-1491911889:6705..6834TCONS_00050533-exon-scaffold_179-1491911889:6705..6834Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050533-proteinTCONS_00050533-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:6705..10277 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.39927	0.722637	0.0936297	0	1.32875	0.803268	0.683237	0.887097	0.864274	0.485928	0.56748	0.906786	0.563591	1.20765	0.828358	1.18432	1.29239	1.13997	1.32453	0.630743	1.66224	1.16763	1.0176	0.976889	1.73375	1.10349	0.292275	0.17987	1.59355	1.37346
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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