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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050531 ID=TCONS_00050531|Name=TCONS_00050531|organism=Clytia hemisphaerica|type=transcript|length=1083bp
ttgccctccatctttgtacaaaaaatcagaaaaaagtaatgacaggattt
tgcacaaaatccaaaaaaccctatttttaggtagtttttggcccaaattt
gcccaaataaattctttctcaaaaatcgggctccgtcacgttctgggcat
tgccattttgcatcattgtgcaaaaaaatcagaaaaaactaatgagccaa
tcctgagaaaagctggtaacagacggacggacggacggacgaacgaacag
acggacataggttaatttatagaacctccaccggggtacccggaggtagg
tccaaaaagtaactACAAACGTGAGCTGCAATCTCGTTGACATTGAAGGT
TTTGAGGGATGTATAGGTTTTTGGTGATCATTGCATTTTGTTTGGTACCA
CCATTGAAATCTCAAGaaaccAACATAAACTTCGATGGAAAACGGTATGT
TTTGGTAAGATCGCTAGCAACATGGTCAGACGCTGAAAGCGATTGCAATT
CCAAAGGAGGTCATCTTGCAAGCATCCAATCAACCCAAGAAGCTAACCAC
TTTAATGATATCGCTAAAAATCGCGTGATTTGGCTGGGAGCGAAACGATC
ATCAAGCGGTGACTGGAATTGGGCTGACGATACGCTTTGGTCATTTACAC
ACTGGAATGGAGGGGAACCAAGCAATGACGGTGGAAATGAAAACTGTTTG
GCAACGTCTGGTGGAAGCACTGCCGTGTGGAACGATTTGGATTGTGAACT
TCCTTTACCATATTTGTGTGAATTAGGAAATAATTACGGAGATTTGTAAT
CCAAACTTtctatattttgtcaaattttgacttattggttgaaaataaat
aaatacgatcgatattattttttgtaaacCTTTAATacagtattttgatt
ttaattcaaAGGATTCTTCTAGAAGCCCCTTAGCAGGGCAAATTGTCCCT
TAAATATACAGCATGTTAGTGtattaatttctttttctaatCTTAATTGT
TTTATAGTTTTCAGacttaagaaaaaattaaaagtttatatccAGAATAA
TCAATATTTGTGCAGAAAATATTCTTGTTTCAG Run BLAST on NCBI protein sequence of TCONS_00050531-protein >TCONS_00050531-protein ID=TCONS_00050531-protein|Name=TCONS_00050531-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MYRFLVIIAFCLVPPLKSQETNINFDGKRYVLVRSLATWSDAESDCNSKG
GHLASIQSTQEANHFNDIAKNRVIWLGAKRSSSGDWNWADDTLWSFTHWN
GGEPSNDGGNENCLATSGGSTAVWNDLDCELPLPYLCELGNNYGDL Run BLAST on NCBI transcript from alignment at scaffold_179:489131..491490+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050531 ID=TCONS_00050531|Name=TCONS_00050531|organism=Clytia hemisphaerica|type=transcript|length=2360bp|location=Sequence derived from alignment at scaffold_179:489131..491490+ (Clytia hemisphaerica)
ttgccctccatctttgtacaaaaaatcagaaaaaagtaatgacaggattt
tgcacaaaatccaaaaaaccctatttttaggtagtttttggcccaaattt
gcccaaataaattctttctcaaaaatcgggctccgtcacgttctgggcat
tgccattttgcatcattgtgcaaaaaaatcagaaaaaactaatgagccaa
tcctgagaaaagctggtaacagacggacggacggacggacgaacgaacag
acggacataggttaatttatagaacctccaccggggtacccggaggtagg
tccaaaaagtaactACAAACGTGAGCTGCAATCTCGTTGACATTGAAGGT
TTTGAGGGATGTATAGGTTTTTGGTGATCATTGCATTTTGTTTGGTACCA
CCATTGAAATCTCAAGGTGAGAAGAAGAACATTTCTCcatcattttcatt
tcatgTTCTTGAACATGTGTAAAAAATTaatacctttttttataagaacc
atagTTAATTTTTGTTTAGGCTCAGttattcttgtttttttctGTTCTTC
GAGCTTCACCTTGTGCTTATCCTGTTCTCATTTTAGGACACAAAATTAAG
TAGTTTTAAAGTAATCAAATGTTTATTGTTTCGACCTATTCCGGGTTCAg
tgttgttcttaaattgttcttatttttcggcATCTGGAGcctcattattc
ttattttaaagtgttcttataaaaaaagaatgtagCATAATGACTCATAT
GTTTTACGTTGATTTGGTCGCATGATCGCACACCCAGTGTCGGGCCCCAA
ATCAGCCATACTCTAGTTAGAATGTCTAAGACTAAATCCACCTTTTAACC
ATGTCATTTTTTCAATTAGTAAATAAATTTGTAAGCTTATAAGGTGGTAA
TCAGTGGggttttttctttcagaaaccAACATAAACTTCGATGGAAAACG
GTATGTTTTGGTAAGATCGCTAGCAACATGGTCAGACGCTGAAAGCGATT
GCAATTCCAAAGGAGGTCATCTTGCAAGCATCCAATCAACCCAAGAAGCT
AACCACTTTAATGATATCGCTAAAAATCGGTAGGAATAATTACCATACAG
TGCAATATTTTAGAATGTTTACACTTTTGAAATAGTGAACTTCTCAACTC
TAAAATAGGTTCCTTGTAAACTGACTTGAATTTGTTTGGATAATTAATCC
AGGAAGTTCCCCAGAGCTTTGCCTTATGCGTgattccaatttttttcttt
gctgTGATGGCAAGATTTCGGTGTATTTTTCATTACTCTTCGCGGGATGA
AAAATTCTAGTGATTTTCATGATTGTGATGCGATGGAAACAAAAGGTTGA
CACAATTTTCCTCCTTTAGGAaccttgaaataattttttgagacCATAGT
CAAAAGATTGGTTAtgagatttgaagataaaaattgTGTTTTGAGTTCCT
TTACTATTTCAACAAAAATCTGTCTTTATGATTTTGTTTCTGAATTTATT
TTATCAATGTCGAAAGATTGAACTATCTaagaaattttcggaaaaaaatt
ctaaattgatgtatcaaaagttatgactctttttgtgcaaaaaattgtga
tgaaaaattggtcTTTCTCAAAATGCTGTTTCttcattttatcaaatttt
tcaatacaattttttaattttcagattcaggaattaGTTGGCCTATCCGA
AAATGTATAACGTATCATttgatttagtttgtataaactaacatttgttc
cctccattactttttgctttatttctaatactatgtctgaattagtcgtc
tagcttgctaaactatcagagcccttaagtcatCCATTGATTTTTTATAG
CGTGATTTGGCTGGGAGCGAAACGATCATCAAGCGGTGACTGGAATTGGG
CTGACGATACGCTTTGGTCATTTACACACTGGAATGGAGGGGAACCAAGC
AATGACGGTGGAAATGAAAACTGTTTGGCAACGTCTGGTGGAAGCACTGC
CGTGTGGAACGATTTGGATTGTGAACTTCCTTTACCATATTTGTGTGAAT
TAGGAAATAATTACGGAGATTTGTAATCCAAACTTtctatattttgtcaa
attttgacttattggttgaaaataaataaatacgatcgatattatttttt
gtaaacCTTTAATacagtattttgattttaattcaaAGGATTCTTCTAGA
AGCCCCTTAGCAGGGCAAATTGTCCCTTAAATATACAGCATGTTAGTGta
ttaatttctttttctaatCTTAATTGTTTTATAGTTTTCAGacttaagaa
aaaattaaaagtttatatccAGAATAATCAATATTTGTGCAGAAAATATT
CTTGTTTCAG Coding sequence (CDS) from alignment at scaffold_179:489131..491490+ >TCONS_00050531 ID=TCONS_00050531|Name=TCONS_00050531|organism=Clytia hemisphaerica|type=CDS|length=1323bp|location=Sequence derived from alignment at scaffold_179:489131..491490+ (Clytia hemisphaerica)
ATGTATAGGTTTTTGGTGATCATTGCATTTTGTTTGGTACCACCATTGAA
ATCTCAAGaaaccAACATAAACTTCGATGGAAAACGGTATGTTTTGGTAA
GATCGCTAGCAACATGGTCAGACGCTGAAAGCGATTGCAATTCCAAAGGA
GGTCATCTTGCAAGCATCCAATCAACCCAAGAAGCTAACCACTTTAATGA
TATCGCTAAAAATCGCGTGATTTGGCTGGGAGCGAAACGATCATCAAGCG
GTGACTGGAATTGGGCTGACGATACGCTTTGGTCATTTACACACTGGAAT
GGAGGGGAACCAAGCAATGACGGTGGAAATGAAAACTGTTTGGCAACGTC
TGGTGGAAGCACTGCCGTGTGGAACGATTTGGATTGTGAACTTCCTTTAC
CATATTTGTGTGAATTAGGAAATAATTACGGAGATTTGTAAATGTATAGG
TTTTTGGTGATCATTGCATTTTGTTTGGTACCACCATTGAAATCTCAAGa
aaccAACATAAACTTCGATGGAAAACGGTATGTTTTGGTAAGATCGCTAG
CAACATGGTCAGACGCTGAAAGCGATTGCAATTCCAAAGGAGGTCATCTT
GCAAGCATCCAATCAACCCAAGAAGCTAACCACTTTAATGATATCGCTAA
AAATCGCGTGATTTGGCTGGGAGCGAAACGATCATCAAGCGGTGACTGGA
ATTGGGCTGACGATACGCTTTGGTCATTTACACACTGGAATGGAGGGGAA
CCAAGCAATGACGGTGGAAATGAAAACTGTTTGGCAACGTCTGGTGGAAG
CACTGCCGTGTGGAACGATTTGGATTGTGAACTTCCTTTACCATATTTGT
GTGAATTAGGAAATAATTACGGAGATTTGTAAATGTATAGGTTTTTGGTG
ATCATTGCATTTTGTTTGGTACCACCATTGAAATCTCAAGaaaccAACAT
AAACTTCGATGGAAAACGGTATGTTTTGGTAAGATCGCTAGCAACATGGT
CAGACGCTGAAAGCGATTGCAATTCCAAAGGAGGTCATCTTGCAAGCATC
CAATCAACCCAAGAAGCTAACCACTTTAATGATATCGCTAAAAATCGCGT
GATTTGGCTGGGAGCGAAACGATCATCAAGCGGTGACTGGAATTGGGCTG
ACGATACGCTTTGGTCATTTACACACTGGAATGGAGGGGAACCAAGCAAT
GACGGTGGAAATGAAAACTGTTTGGCAACGTCTGGTGGAAGCACTGCCGT
GTGGAACGATTTGGATTGTGAACTTCCTTTACCATATTTGTGTGAATTAG
GAAATAATTACGGAGATTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050531-exon-scaffold_179-1491911889:489131..489546 | TCONS_00050531-exon-scaffold_179-1491911889:489131..489546 | Clytia hemisphaerica | exon |
| TCONS_00050531-exon-scaffold_179-1510915933:489131..489546 | TCONS_00050531-exon-scaffold_179-1510915933:489131..489546 | Clytia hemisphaerica | exon |
| TCONS_00050531-exon-scaffold_179-1575043694:489131..489546 | TCONS_00050531-exon-scaffold_179-1575043694:489131..489546 | Clytia hemisphaerica | exon |
| TCONS_00050531-exon-scaffold_179-1491911889:490053..490209 | TCONS_00050531-exon-scaffold_179-1491911889:490053..490209 | Clytia hemisphaerica | exon |
| TCONS_00050531-exon-scaffold_179-1510915933:490053..490209 | TCONS_00050531-exon-scaffold_179-1510915933:490053..490209 | Clytia hemisphaerica | exon |
| TCONS_00050531-exon-scaffold_179-1575043694:490053..490209 | TCONS_00050531-exon-scaffold_179-1575043694:490053..490209 | Clytia hemisphaerica | exon |
| TCONS_00050531-exon-scaffold_179-1491911889:490981..491490 | TCONS_00050531-exon-scaffold_179-1491911889:490981..491490 | Clytia hemisphaerica | exon |
| TCONS_00050531-exon-scaffold_179-1510915933:490981..491490 | TCONS_00050531-exon-scaffold_179-1510915933:490981..491490 | Clytia hemisphaerica | exon |
| TCONS_00050531-exon-scaffold_179-1575043694:490981..491490 | TCONS_00050531-exon-scaffold_179-1575043694:490981..491490 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_179 | supercontig | scaffold_179:489131..491490 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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