TCONS_00050521 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050521
Unique NameTCONS_00050521
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050521 ID=TCONS_00050521|Name=TCONS_00050521|organism=Clytia hemisphaerica|type=transcript|length=1514bp
AGGGGTTTCGAACCCTTCAGCTAtatcaagaaaattttaagCAAGTCAGC
CCAATCCAATTCAGTATTGGGCATCTATTCGCTAGCTTCtcattttttgc
agaaagacagATGACTAGGTTTTCTAAAAGATTATTCTCTATGTATTAAA
TACTGTCTAATTGTTGTATTTATACGTTCCAACAAAATATCAACGAAACA
TGAGCTTTATCGTCAATTTGAATGCCCTCAAAATGCAGTCCGATATTAGC
GCAGACGACAATGGCTCTTACATGAATGGTTACAGTCGACCAACATCTGT
TACATTTAATGGCGACTCTTACATTATCTCCAAATATAACGGCACTTCGA
ACTCCTGCAAAACCTTTCATCGGAAAATCATAAGATTGCGAAAGGATGGT
GGCGAAAATTACTTTCAATACTGCCTTTTGCAATACAATTTTGACGGGGA
AGAAAGGAGCTTTACCGTGGCGTCTCACGGAAACGCCAAGAAAGCAGGCT
CTTACAAACAGACACAAAGCAGTGTAAGAAATATGGTGAAGACGACCGGA
AAGTCGAACAAGCCTTCAGAAACGACGAGGAAGGTAAATAAAGAACTGGG
CGGCACACTAAAAGCCACATCATCTGGCTCCTTACCAAGGAACAATTGTC
AGGTCCGCAATCTAAACAGAGCAAACAAAGGAGAAACATCTAAAAAGGAC
ACTCTTGCTATGATGATGGAAGAGTGcaagaaaacaatgaaatctagtag
atactttatccGCCGTGTCGAAGGGGCCCCTGAACCAATGTGTATTATCG
GATCTGAAGCAGCATTTCAGGATTTAGACAGATATTGTTGTAAAATGCCT
CAAGGGTTAAATTTAGTGTTAATAGTCGATCCGACAttcaattttggtga
tttttttttcactccgATAACATACCAAAATCTAGCAGTGTTAAGGAAGT
CTACAAACAAACCGAAGATTGATATGGGTCCAGCACTTATACACTACCGG
AAGATGTTTTCTTCATATCATTACTTCTCATCGAGCCTCGTCGGAATTCA
CCCTGAATTAAGCGAGTTGAAATGTTTTGGAACGGACGGAGAAGCAACAC
TTCAATCAGCATTCTCGAAAACGTTCCCGTTCTCTGACCAGCTAAGGTGT
TTTATCCACTCCAAGAGAAACGTTGAAGAAAAGCTTAAAGAACTTGCACT
TCCGATGACATCCAAACAGACCATCATCCACGACATTTTTGGCAAAGTAG
AAGGAACCCACAAGATTGAGGGTTTGGCAGATGCACCAGACGCCAACATG
TTTGACATCTATGTTGAATCCATCAAGAATAAATGGGACGATATTGAGTT
GCCTCATGTTCCAAAAAATCTATCACCCAAGTTTCACGAGTGGTTCACCA
AAAATGTTGTGCCTTATATGAGGTCGCACATGTTGACTAACATCCGACAA
CGCAATGGCATCTCTGAAGATTTCTCCACAAACCAGAGTGAATCCCTTAA
CGCTAAAATTCGCC
Run BLAST on NCBI

protein sequence of TCONS_00050521-protein

>TCONS_00050521-protein ID=TCONS_00050521-protein|Name=TCONS_00050521-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp
MSFIVNLNALKMQSDISADDNGSYMNGYSRPTSVTFNGDSYIISKYNGTS
NSCKTFHRKIIRLRKDGGENYFQYCLLQYNFDGEERSFTVASHGNAKKAG
SYKQTQSSVRNMVKTTGKSNKPSETTRKVNKELGGTLKATSSGSLPRNNC
QVRNLNRANKGETSKKDTLAMMMEECKKTMKSSRYFIRRVEGAPEPMCII
GSEAAFQDLDRYCCKMPQGLNLVLIVDPTFNFGDFFFTPITYQNLAVLRK
STNKPKIDMGPALIHYRKMFSSYHYFSSSLVGIHPELSELKCFGTDGEAT
LQSAFSKTFPFSDQLRCFIHSKRNVEEKLKELALPMTSKQTIIHDIFGKV
EGTHKIEGLADAPDANMFDIYVESIKNKWDDIELPHVPKNLSPKFHEWFT
KNVVPYMRSHMLTNIRQRNGISEDFSTNQSESLNAKIR
Run BLAST on NCBI

transcript from alignment at scaffold_179:363087..365129+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050521 ID=TCONS_00050521|Name=TCONS_00050521|organism=Clytia hemisphaerica|type=transcript|length=2043bp|location=Sequence derived from alignment at scaffold_179:363087..365129+ (Clytia hemisphaerica)
AGGGGTTTCGAACCCTTCAGCTAtatcaagaaaattttaagCAAGTCAGC
CCAATCCAATTCAGTATTGGGCATCTATTCGCTAGCTTCtcattttttgc
agaaagacagATGACTAGGTTTTCTAAAAGATTATTCTCTATGTATTAAA
TACTGTCTAATTGTTGTATTTATACGTTCCAACAAAATATCAACGAAACA
TGAGCTTTATCGTCAATTTGAATGCCCTCAAAATGCAGTCCGATATTAGC
GCAGACGACAATGGCTCTTACATGAATGGTTACAGTCGACCAACATCTGT
TACATTTAATGGCGACTCTTACATTATCTCCAAATATAACGGCACTTCGA
ACTCCTGCAAAACCTTTCATCGGAAAATCATAAGATTGCGAAAGGATGGT
GGCGAAAATTACTTTCAATACTGCCTTTTGCAATACAATTTTGACGGGGA
AGAAAGGAGCTTTACCGTGGCGTCTCACGGAAACGCCAAGAAAGCAGGCT
CTTACAAACAGACACAAAGCAGTGTAAGAAATATGGTGAAGACGACCGGA
AAGTCGAACAAGCCTTCAGAAACGACGAGGAAGGTAAATAAAGAACTGGG
CGGCACACTAAAAGCCACATCATCTGGCTCCTTACCAAGGAACAATTGTC
AGGTCCGCAATCTAAACAGAGCAAACAAAGGAGAAACATCTAAAAAGGAC
ACTCTTGCTATGATGATGGAAGAGTGcaagaaaacaatgaaatctagtag
atactttatccGCCGTGTCGAAGGGGCCCCTGAACCAATGTGTATTATCG
GATCTGAAGCAGCATTTCAGGATTTAGACAGATATTGTTGTAAAATGCCT
CAAGGGTTAAATTTAGTGTTAATAGTCGATCCGACAttcaattttggtga
tttttttttcactccgATAACATACCAAAATCTAGCAGTGTTAAGGAAGT
CTACAAACAAACCGAAGATTGATATGGGTCCAGCACTTATACACTACCGG
AAGATGTTTTCTTCATATCATTACTTCTCATCGAGCCTCGTCGGAATTCA
CCCTGAATTAAGCGAGTTGAAATGTTTTGGAACGGACGGAGAAGCAACAC
TTCAATCAGCATTCTCGAAAACGTTCCCGTTCTCTGACCAGCTAAGGTGT
TTTATCCACTCCAAGAGAAACGTTGAAGAAAAGCTTAAAGAACTTGCACT
TCCGATGACATCCAAACAGACCATCATCCACGACATTTTTGGCAAAGTAG
AAGGAACCCACAAGTAAGTAAAGTTTGATTTTATTTCGGATTTAGAGAAA
ATCGCCATCTGTATAAAATTTGCGGTTGAGCTGCTCTGACTTGAAATTTC
ACGAGGACTTATTATCGCGGATGGAACAATATAGGAGATAACATGTTCAC
GGTTTTGTGCCTTTTGACTGCCAAATTATGCATGTGGCACCCCCAGCCCC
AGCGGCGGTTTTTAGAGGGTGCCAAAGAGGAAAGCGTGCCAAAAGGCGCC
TAAAAACACTAATTTTGGCGCTCATTTCCCTTTTTTACCTCGCAGATTTT
AGCTTAAGAGGAAGAATTGTCTAACATTTTCGCGCTTGCTTCGCTCGCGT
CCTTTTGAAACTAAATCTTTGAAGTAACAAGGCGCCAAATTACCAATTTT
CTCATTTTGCCTCCCTGTTGGTGGAGCCACCAGCGCTTCTTTTATGTCAG
CAAACATTTTGAAAGTAATAGTACTTAGTTTTGGTATTctgtagtatttt
tttaattccTAATCGacgttttttttcctttttacttCCCAGGATTGAGG
GTTTGGCAGATGCACCAGACGCCAACATGTTTGACATCTATGTTGAATCC
ATCAAGAATAAATGGGACGATATTGAGTTGCCTCATGTTCCAAAAAATCT
ATCACCCAAGTTTCACGAGTGGTTCACCAAAAATGTTGTGCCTTATATGA
GGTCGCACATGTTGACTAACATCCGACAACGCAATGGCATCTCTGAAGAT
TTCTCCACAAACCAGAGTGAATCCCTTAACGCTAAAATTCGCC

Coding sequence (CDS) from alignment at scaffold_179:363087..365129+

>TCONS_00050521 ID=TCONS_00050521|Name=TCONS_00050521|organism=Clytia hemisphaerica|type=CDS|length=2628bp|location=Sequence derived from alignment at scaffold_179:363087..365129+ (Clytia hemisphaerica)
ATGAGCTTTATCGTCAATTTGAATGCCCTCAAAATGCAGTCCGATATTAG
CGCAGACGACAATGGCTCTTACATGAATGGTTACAGTCGACCAACATCTG
TTACATTTAATGGCGACTCTTACATTATCTCCAAATATAACGGCACTTCG
AACTCCTGCAAAACCTTTCATCGGAAAATCATAAGATTGCGAAAGGATGG
TGGCGAAAATTACTTTCAATACTGCCTTTTGCAATACAATTTTGACGGGG
AAGAAAGGAGCTTTACCGTGGCGTCTCACGGAAACGCCAAGAAAGCAGGC
TCTTACAAACAGACACAAAGCAGTGTAAGAAATATGGTGAAGACGACCGG
AAAGTCGAACAAGCCTTCAGAAACGACGAGGAAGGTAAATAAAGAACTGG
GCGGCACACTAAAAGCCACATCATCTGGCTCCTTACCAAGGAACAATTGT
CAGGTCCGCAATCTAAACAGAGCAAACAAAGGAGAAACATCTAAAAAGGA
CACTCTTGCTATGATGATGGAAGAGTGcaagaaaacaatgaaatctagta
gatactttatccGCCGTGTCGAAGGGGCCCCTGAACCAATGTGTATTATC
GGATCTGAAGCAGCATTTCAGGATTTAGACAGATATTGTTGTAAAATGCC
TCAAGGGTTAAATTTAGTGTTAATAGTCGATCCGACAttcaattttggtg
atttttttttcactccgATAACATACCAAAATCTAGCAGTGTTAAGGAAG
TCTACAAACAAACCGAAGATTGATATGGGTCCAGCACTTATACACTACCG
GAAGATGTTTTCTTCATATCATTACTTCTCATCGAGCCTCGTCGGAATTC
ACCCTGAATTAAGCGAGTTGAAATGTTTTGGAACGGACGGAGAAGCAACA
CTTCAATCAGCATTCTCGAAAACGTTCCCGTTCTCTGACCAGCTAAGGTG
TTTTATCCACTCCAAGAGAAACGTTGAAGAAAAGCTTAAAGAACTTGCAC
TTCCGATGACATCCAAACAGACCATCATCCACGACATTTTTGGCAAAGTA
GAAGGAACCCACAAGATTGAGGGTTTGGCAGATGCACCAGACGCCAACAT
GTTTGACATCTATGTTGAATCCATCAAGAATAAATGGGACGATATTGAGT
TGCCTCATGTTCCAAAAAATCTATCACCCAAGTTTCACGAGTGGTTCACC
AAAAATGTTGTGCCTTATATGAGGTCGCACATGTTGACTAACATCCGACA
ACGCAATGGCATCTCTGAAGATTTCTCCACAAACCAGAGTGAATCCCTTA
ACGCTAAAATTCGCATGAGCTTTATCGTCAATTTGAATGCCCTCAAAATG
CAGTCCGATATTAGCGCAGACGACAATGGCTCTTACATGAATGGTTACAG
TCGACCAACATCTGTTACATTTAATGGCGACTCTTACATTATCTCCAAAT
ATAACGGCACTTCGAACTCCTGCAAAACCTTTCATCGGAAAATCATAAGA
TTGCGAAAGGATGGTGGCGAAAATTACTTTCAATACTGCCTTTTGCAATA
CAATTTTGACGGGGAAGAAAGGAGCTTTACCGTGGCGTCTCACGGAAACG
CCAAGAAAGCAGGCTCTTACAAACAGACACAAAGCAGTGTAAGAAATATG
GTGAAGACGACCGGAAAGTCGAACAAGCCTTCAGAAACGACGAGGAAGGT
AAATAAAGAACTGGGCGGCACACTAAAAGCCACATCATCTGGCTCCTTAC
CAAGGAACAATTGTCAGGTCCGCAATCTAAACAGAGCAAACAAAGGAGAA
ACATCTAAAAAGGACACTCTTGCTATGATGATGGAAGAGTGcaagaaaac
aatgaaatctagtagatactttatccGCCGTGTCGAAGGGGCCCCTGAAC
CAATGTGTATTATCGGATCTGAAGCAGCATTTCAGGATTTAGACAGATAT
TGTTGTAAAATGCCTCAAGGGTTAAATTTAGTGTTAATAGTCGATCCGAC
AttcaattttggtgatttttttttcactccgATAACATACCAAAATCTAG
CAGTGTTAAGGAAGTCTACAAACAAACCGAAGATTGATATGGGTCCAGCA
CTTATACACTACCGGAAGATGTTTTCTTCATATCATTACTTCTCATCGAG
CCTCGTCGGAATTCACCCTGAATTAAGCGAGTTGAAATGTTTTGGAACGG
ACGGAGAAGCAACACTTCAATCAGCATTCTCGAAAACGTTCCCGTTCTCT
GACCAGCTAAGGTGTTTTATCCACTCCAAGAGAAACGTTGAAGAAAAGCT
TAAAGAACTTGCACTTCCGATGACATCCAAACAGACCATCATCCACGACA
TTTTTGGCAAAGTAGAAGGAACCCACAAGATTGAGGGTTTGGCAGATGCA
CCAGACGCCAACATGTTTGACATCTATGTTGAATCCATCAAGAATAAATG
GGACGATATTGAGTTGCCTCATGTTCCAAAAAATCTATCACCCAAGTTTC
ACGAGTGGTTCACCAAAAATGTTGTGCCTTATATGAGGTCGCACATGTTG
ACTAACATCCGACAACGCAATGGCATCTCTGAAGATTTCTCCACAAACCA
GAGTGAATCCCTTAACGCTAAAATTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031995XLOC_031995Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050521-proteinTCONS_00050521-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050521-exon-scaffold_179-1491911889:363087..364349TCONS_00050521-exon-scaffold_179-1491911889:363087..364349Clytia hemisphaericaexon
TCONS_00050521-exon-scaffold_179-1510915933:363087..364349TCONS_00050521-exon-scaffold_179-1510915933:363087..364349Clytia hemisphaericaexon
TCONS_00050521-exon-scaffold_179-1575043694:363087..364349TCONS_00050521-exon-scaffold_179-1575043694:363087..364349Clytia hemisphaericaexon
TCONS_00050521-exon-scaffold_179-1491911889:364879..365129TCONS_00050521-exon-scaffold_179-1491911889:364879..365129Clytia hemisphaericaexon
TCONS_00050521-exon-scaffold_179-1510915933:364879..365129TCONS_00050521-exon-scaffold_179-1510915933:364879..365129Clytia hemisphaericaexon
TCONS_00050521-exon-scaffold_179-1575043694:364879..365129TCONS_00050521-exon-scaffold_179-1575043694:364879..365129Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:363087..365129 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.108744	0.159064	0.0923442	0.0301148	3.09689	2.64198	2.79309	3.05203	1.94364	3.05858	3.36204	3.42046	1.60503	1.27399	0.890139	1.16632	0.597556	0.427405	1.08269	1.23988	0.816125	0.478337	0.538697	0.641489	2.00856	2.86526	0.565921	0.477402	0.92575	0.733892
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050521 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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