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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050503 ID=TCONS_00050503|Name=TCONS_00050503|organism=Clytia hemisphaerica|type=transcript|length=2831bpRun BLAST on NCBI protein sequence of TCONS_00050503-protein >TCONS_00050503-protein ID=TCONS_00050503-protein|Name=TCONS_00050503-protein|organism=Clytia hemisphaerica|type=polypeptide|length=676bp MGLFSTTKTKKYTVTVKTGKAEKSGTNATIKIVLVDESGKSSEKFSLNRLRun BLAST on NCBI transcript from alignment at scaffold_178:27401..53727- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050503 ID=TCONS_00050503|Name=TCONS_00050503|organism=Clytia hemisphaerica|type=transcript|length=26327bp|location=Sequence derived from alignment at scaffold_178:27401..53727- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_178:27401..53727- >TCONS_00050503 ID=TCONS_00050503|Name=TCONS_00050503|organism=Clytia hemisphaerica|type=CDS|length=34527bp|location=Sequence derived from alignment at scaffold_178:27401..53727- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050503 vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2) HSP 1 Score: 233.802 bits (595), Expect = 2.395e-65 Identity = 191/676 (28.25%), Postives = 322/676 (47.63%), Query Frame = 1
Query: 508 SGTNATIKIVLVDESGKSSEKFSLNRLFYNDFEYGREDDYGVHTEEDFGNLHAIILHRDKIGLYDDWFVEHVAVHHELEGKIHFPLNRWMPANKPMHFEKYDSQLPQIVKANNPGLYKQ-REDELKVKQKNFHYAPIGGMKGMPRSVTT-----LPPEEVFSKDYTKEVGLTKLGSQVSGFLNSL--RYPSEFNSFADFYQLFFGRINVFDVPSGHQNWRSDEKFAALRLIGPNCTKIRGCKKDGGIPKKFKVEEEKISLFLEGK-SLAEQIEADKLFYVTYQDLE----EYVMPANNEPMVCPFALFYSRCDGVLVPIAIQLFQEPSEDNPVFYPPPIDEETLWLLAKFWFGVADSNYHEPVTHLMETHMVAGDFITCFHHSISPSHPIYKXXXXXXXXXXXXNTKGLPVLTGATGTFNKVLMLGKENCDALMLKKYQQYSLKEDGWLDAEIENRGV---GNLANYHYYEDGKLIFDAIHDYMKDCINTIYDGEDDNLAQDFEMQNFAKMLSDPEEGMKGVWGDG---KFEKLDDLIKTVTSIVYILSCAHSAANFNQYDEYGFQPNFPFKLNGSPPKNKDSVTELELVKLFDVDITIETLKLGRV--LSTQGTNK--IGNYEVQYEYKPAIHAHYQKFYERLQVIAKENDEKNAKRRFAYPWLSPKVVPNSISI 2466
+GT+ I + LV +G SEK L++ FYNDFE G D Y V +E+ G + + + + K L DDW+++++ + I FP RW+ + + ++L + + + KQ R EL+ +QK + + + G P S+ LP + F + + L + + F+N + S +N FADF ++F N +W+ D F L G N IR C + +P+K V E + LE + SL ++++ +F V ++ L+ P + + P L Y +VPIAIQL Q P ++NP+F P D + WLLAK W +D + H+ +THL+ TH+V+ F + + HPI+KLL+ H F + INTK L G F+K G ++ + + + + +A I+ RG+ ++ Y Y +DG L+++AI + + ++ Y+G D + +D E+Q+F + GM+G G + + L + +T +++ S H+A NF QYD + PN P + PP K VT ++V D LG V LS N+ +G Y ++ + + +F + L+ I E+N K++ Y +LSP +PNS++I
Sbjct: 16 AGTDDYIYLSLVGSAG-CSEKHLLDKPFYNDFERGAVDSYDVTVDEELGEIQLVRIEKRKYWLNDDWYLKYITLKTPHGDYIEFPCYRWITGDVEVVLRDGRAKL---ARDDQIHILKQHRRKELETRQKQYRW--MEWNPGFPLSIDAKCHKDLPRDIQFDSEKGVDFVLNYSKAMENLFINRFMHMFQSSWNDFADFEKIFVKISNTIS-ERVMNHWQEDLMFGYQFLNGCNPVLIRRCTE---LPEKLPVTTEMVECSLERQLSLEQEVQQGNIFIVDFELLDGIDANKTDPCTLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPS--DAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEA-IKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEG-DQVVEEDPELQDFVNDVY--VYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMRAPPPTAKGVVTIEQIVDTLP-DRGRSCWHLGAVWALSQFQENELFLGMYPEEHFIEKPVKEAMARFRKNLEAIVSVIAERNKKKQLPYYYLSPDRIPNSVAI 674 The following BLAST results are available for this feature:
BLAST of TCONS_00050503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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