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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050500 ID=TCONS_00050500|Name=TCONS_00050500|organism=Clytia hemisphaerica|type=transcript|length=1310bp
acatcccctctgataagttttgatataggggatgcgaatcaggctcacaa
aaccgttccgaacttagcaaaaaatctgctaaccaaaaaaagagttgaat
gatagagaactttgattgacagtttgtcgtcttttgttatcttgaaagtt
ttgtttgctaattcaattaatttcgatagctattcggtaattttctcgga
agcgatatcagagcctgattcgcatcccctatatcaaaactaatttgggg
atgcatgcagcatATCGTTACCTATGCAACAAGTGTGTACTTCGAGATCA
GTTCATCGCCGATACTATGAACctgaattatattttattgagACAAATTC
GATAAAGAATAAATCTGTTGAAGATTTAAAGGACAAATCTGTTAAAGATT
TCAGCTTTCGTCgtaaagaaaaacgaaaagtaACAAACAGAAAATCTGTA
GATAGGTATAAAGAAAATGGCTGAAACGTGGCTGGATAAAATATATCTGC
ATGGACATGTCTATTTGGAAATGGCTGAAAGTCATATGCTACAGGGTTTT
ATAGCATCAACAATACATGAAGAAATCATTATGAATTCATTTGTCTATTT
GCGACCAACAATGCAGGATAAGCGCAACATTATCATCAACAAATCagtgt
tttttttcatcatattAATAATGGAGCTAATGCTACATCAAGCGTTTTTA
TTACAGTTCCTTGCAATGTCAATGAATCGTGGAAGAGCTTGGTCAAAAAT
GTCGCCGCCCTCTCGAAATATAGCAAATGAGTATATATTGAGTATTACTG
TGCTGCCACGATCCTGAAAATGCAACAATATGGCGGAAATCAAcgaaaat
tctaacaaggaaattcaacaaaattatgGATATTGCACACCCAATNNAAT
ATAAAAGCCGGCGCTTTGAATGTGGAAATTGTGTTACAATAACGCCACTC
TTACTTGAGAGAATTAAAACAAGCAGACAAAAAGCTCGCAGTAACATTAC
AACGAAGGAAGCAGATAAAGATGAACTGAAACAACAAATGGGTTTCGATG
TGACGATAATCAAGGTAGAACGCATAGGAGCTCGTAAAGATGAAATGTAT
ATAGCAGACAAAAAGCTCGCAGTAACATTACAACGAAGGAAGCAGATAAA
GATGAACTGAAACAACAAATGGGTTTCGATGTGACGATAATCAAGGTAGA
ACGCATAGGAGCTCGTAAAGATGAAATGTATATAGCAGACAAAAAGCTCG
CAGTAACATTACAACGAAGGAAGCAGATAAAGATGAACTGAAACAACAAA
TGGGTTTCGA Run BLAST on NCBI transcript from alignment at scaffold_178:92893..95957+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050500 ID=TCONS_00050500|Name=TCONS_00050500|organism=Clytia hemisphaerica|type=transcript|length=3065bp|location=Sequence derived from alignment at scaffold_178:92893..95957+ (Clytia hemisphaerica)
acatcccctctgataagttttgatataggggatgcgaatcaggctcacaa
aaccgttccgaacttagcaaaaaatctgctaaccaaaaaaagagttgaat
gatagagaactttgattgacagtttgtcgtcttttgttatcttgaaagtt
ttgtttgctaattcaattaatttcgatagctattcggtaattttctcgga
agcgatatcagagcctgattcgcatcccctatatcaaaactaatttgggg
atgcatgcagcatATCGTTACCTATGCAACAAGTGTGTACTTCGAGATCA
GTTCATCGCCGATACTATGAACctgaattatattttattgagACAAATTC
GATAAAGAATAAATCTGTTGAAGATTTAAAGGACAAATCTGTTAAAGATT
TCAGCTTTCGTCgtaaagaaaaacgaaaagtaACAAACAGAAAATCTGTA
GATAGGTATAAAGAAAATGGCTGAAACGTGGCTGGATAAAATATATCTGC
ATGGACATGTCTATTTGGAAATGGCTGAAAGTCATATGCTACAGGGTTTT
ATAGGTAAGGGGACTCTTTTTGTTGGACCTACACCTCGGAGGTTCTTTAA
CCCTTAAAAGCacctaattaaaaaaaaaaaatagctagttcaaactttaa
aggcccACTGTGTggacctgactgaatgatagaaaggtgcccggtggtaa
aacttcaaatcagttcgctagaagacagaataaagtaaagcaGGGCTAAA
TTTGGAGGTTCTCGGATCACTTGttcaccaaaaatggtcaaaaaacggtc
aacaTCTCAAAATAacggatttttgtcaaaattctgcatttttttttact
ttttggcttaaaatctcgctgggaAGACTCACctttgaatctttttttgc
tAACCCTGAAGCTCGATTTATTTCCTACTAGTTagaccaaaaatattttt
tttctggccCTAAACATTAGATTTtcttgtttgaaattttctcttttGGA
ATTTTCAGTGGAAATGATCATTTCTCGCAATTGGCTtaatatttttctct
gattttttccaCAATGATGTTAAGTGGTAATGTttgaaatgtgacggagc
caaattttcgaaaaaatattttttaaggaatctttGGGCCAAAAATTAGc
taaaaattaggtttttttgaaatttgtgtGAGATTGCTTCActagttttt
tcaaattattagcATGCCAGAAGAAGcctttttttcaggaaaaatctTTG
CCTTAAAAGTCGGATGTAATAATTTGGgaaaattcccttttgtcattttc
GGGGAAAAGAGCATTTTTCGCGTTTaggtttgtatttttttaacctttta
gcCTACATTTTTGTACGGTTGTggtaatttttctattttcttttattaca
tTTGCCTTCAGCATGTAGCTTTGTAGATTTTCCTATATGTTCTTTTGAGG
AGAACTGAGTGATAGATGACGGCCTtctgtaccctgagtatcagaggtta
ggttttcaaagaaagtagtaacctctgaagacaaatattagaaattttat
cgcgcatgtgtcaatctaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNttatcaagctgcatgaattcttcaagtatgt
atttttttataatggaatataattttttttttcaagcaaacgcctcaatc
aatcaataaaataatcaggaagattattttttaatgtttaatatttaaag
cattaaagctttataagtgcatgacatgatctttatgtgggggcatttag
tgaaagctatgactagtaatagacagactttatgttatgattctctatca
ctgactctttttacaaagcattgatgactttttgtaagttgtgttttcaa
cgacgggaataaaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgttacttttgtcttcgc
tgattgcgcgatgaatagaatctcgattcgtcggcacagcgtaaatatat
gattttgagctgtgcttttcacggtaggcCTTCTGTAGTTGTAAATTTTC
CGTATGGTCTAAACTTTGAACAACAGTCTCATTCCTATTTTATTACCTTC
TTTTTTCAGCATCAACAATACATGAAGAAATCATTATGAATTCATTTGTC
TATTTGCGACCAACAATGCAGGATAAGCGCAACATTATCATCAACAAATC
agtgttttttttcatcatattAATAATGGAGCTAATGCTACATCAAGCGT
TTTTATTACAGTTCCTTGCAATGTCAATGAATCGTGGAAGAGCTTGGTCA
AAAATGTCGCCGCCCTCTCGAAATATAGCAAATGAGTATATATTGAGTAT
TACTGTGCTGCCACGATCCTGAAAATGCAACAATATGGCGGAAATCAAcg
aaaattctaacaaggaaattcaacaaaattatgGATATTGCACACCCAAT
NNAATATAAAAGCCGGCGCTTTGAATGTGGAAATTGTGTTACAATAACGC
CACTCTTACTTGAGAGAATTAAAACAAGCAGACAAAAAGCTCGCAGTAAC
ATTACAACGAAGGAAGCAGATAAAGATGAACTGAAACAACAAATGGGTTT
CGATGTGACGATAATCAAGGTAGAACGCATAGGAGCTCGTAAAGATGAAA
TGTATATAGCAGACAAAAAGCTCGCAGTAACATTACAACGAAGGAAGCAG
ATAAAGATGAACTGAAACAACAAATGGGTTTCGATGTGACGATAATCAAG
GTAGAACGCATAGGAGCTCGTAAAGATGAAATGTATATAGCAGACAAAAA
GCTCGCAGTAACATTACAACGAAGGAAGCAGATAAAGATGAACTGAAACA
ACAAATGGGTTTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050500-exon-scaffold_178-1491911889:92893..93446 | TCONS_00050500-exon-scaffold_178-1491911889:92893..93446 | Clytia hemisphaerica | exon |
| TCONS_00050500-exon-scaffold_178-1510915933:92893..93446 | TCONS_00050500-exon-scaffold_178-1510915933:92893..93446 | Clytia hemisphaerica | exon |
| TCONS_00050500-exon-scaffold_178-1575043694:92893..93446 | TCONS_00050500-exon-scaffold_178-1575043694:92893..93446 | Clytia hemisphaerica | exon |
| TCONS_00050500-exon-scaffold_178-1491911889:95202..95957 | TCONS_00050500-exon-scaffold_178-1491911889:95202..95957 | Clytia hemisphaerica | exon |
| TCONS_00050500-exon-scaffold_178-1510915933:95202..95957 | TCONS_00050500-exon-scaffold_178-1510915933:95202..95957 | Clytia hemisphaerica | exon |
| TCONS_00050500-exon-scaffold_178-1575043694:95202..95957 | TCONS_00050500-exon-scaffold_178-1575043694:95202..95957 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_178 | supercontig | scaffold_178:92893..95957 + |
Blast
The following BLAST results are available for this feature:
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