TCONS_00050496 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00050496
Unique Name	TCONS_00050496
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1243

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_176:15878..19245+
coding sequence from alignment at scaffold_176:15878..19245+

transcript sequence

>TCONS_00050496 ID=TCONS_00050496|Name=TCONS_00050496|organism=Clytia hemisphaerica|type=transcript|length=1243bp
GAAACATACATTCATCATTTTATGTTGTAGgaagttttaaaaattctcaA
CGACCTCAACATCCCTTTTCTCATTTTTGGGTGTTGAATAATGGACTGAA
ACTTGACTATGAGGATTGATTTTCCCCTTGTTTTAATGCTGGCTGGGGTT
TTGTGTTTCATTgcttttaagtcagaaaatttggGGAAACTTTAGTCGGG
ATGGAAAAACTAGCACAGTATCTGGCAGtgaggatttttttatttgatta
tttccaGCGAGGGGACAGAAAATTggagtttaatttttcaatggGGACAA
TATTTTAGCCAATTATTTCAGGGCTGTGAGACTAAAGAGctCGTTGATTC
TGAGGAAATTTTAAGATGAAGACTCTTCTGTTCTTCCTGTTCCTTGCTAC
TCTTGCAACTTATGCTTGTGCTTCAAAGCATCCTAAAGGATCCGATGACG
ACGTCGACTTTGGGGAAGACTCCATATCCTCATTGCTGCGAAACGAAATC
TTGAATAGTGATGAGGAAAACGAAGATAACGATGATAATGAGATTGAAGA
CAATGAAGACTTTGAAGACGAGGAACTTTTACAGAAGAACATAATGCAAA
AAGATCCATTTCTTTTTTCTGgaagaagacgaagaagaagaagatgtgCG
AGTCCTGCTAAAAAAAAATGCCATGTGGAAACCAATGGCTGTGGATCGgg
cattttcacaaaaattccaTACACTTACAAGAAATTGTTGACTCCTGCAT
GCCACAAACACGATGTCTGTTATAGCTGTGGCAAAAAATATGGTTGGTCA
CAAAAACCTTGTGATGTTCGGTTCAAAAGTGACATGTATCGATTATGCAG
GTGCAAGTTAACAGGATGGAGGGTTGTTCTTCTACCGAATTGCTATAAAA
GAGCATTACAAATGTACAGCATTGTGCGTCTCCTCGGAAAGAACTTTTAC
AACAATGTTGCTTCGGATTGGTGCAAAAGCTGTGTGATTCCATATGGAAG
CCCTAATTATACtgtttgaattattttcatcttttgatgaCCTCAGCTAA
ATTTCGATTAAATATAGACTATATTTTTTGCTGTTGGCAATGTTAACGGA
CTTAAAGGATGGGCTTGAAGGACTTAATGTAAAACACGCACGAACCCAAC
AAACTTTAACACGAACTATTTCTGCTGTAGCCAAAGCAAAGTCATTTTGC
ATTTGAATGATACTTCgtcactttgaaaattttttaatctaCC

Run BLAST on NCBI

protein sequence of TCONS_00050496-protein

>TCONS_00050496-protein ID=TCONS_00050496-protein|Name=TCONS_00050496-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MKTLLFFLFLATLATYACASKHPKGSDDDVDFGEDSISSLLRNEILNSDE
ENEDNDDNEIEDNEDFEDEELLQKNIMQKDPFLFSGRRRRRRRCASPAKK
KCHVETNGCGSGIFTKIPYTYKKLLTPACHKHDVCYSCGKKYGWSQKPCD
VRFKSDMYRLCRCKLTGWRVVLLPNCYKRALQMYSIVRLLGKNFYNNVAS
DWCKSCVIPYGSPNYTV

Run BLAST on NCBI

transcript from alignment at scaffold_176:15878..19245+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00050496 ID=TCONS_00050496|Name=TCONS_00050496|organism=Clytia hemisphaerica|type=transcript|length=3368bp|location=Sequence derived from alignment at scaffold_176:15878..19245+ (Clytia hemisphaerica)
GAAACATACATTCATCATTTTATGTTGTAGgaagttttaaaaattctcaA
CGACCTCAACATCCCTTTTCTCATTTTTGGGTGTTGAATAATGGACTGAA
ACTTGACTATGAGGATTGATTTTCCCCTTGTTTTAATGCTGGCTGGGGTT
TTGTGTTTCATTgcttttaagtcagaaaatttggGGAAACTTTAGTCGGG
ATGGAAAAACTAGCACAGTATCTGGCAGtgaggatttttttatttgatta
tttccaGCGAGGGGACAGAAAATTggagtttaatttttcaatggGGACAA
TATTTTAGCCAATTATTTCAGGGCTGTGAGACTAAAGAGGTATTTCTTTG
TCAGATACTATGTAAGATATATATCTGTCCAAGACTGCTTTTCTTTTGTA
CCAAGAATTTGCTTCTAAAATCACCAACACGAGAATATATTTTCCACTTT
GATTAAATATAATGAGACAACTACAATCCTGGACAGAACTGTTTGTccac
ccccctccccccaataTCAGTGTTGATGTTGAGTCTTGTGAAGgtgcaaa
aattcaactccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNaaaaattcaactccaacattgattttggggggagagggg
ggactTGTCGGTAGAAATAAGTTATTGGACATCAGTTTTGACCACGATTG
TACCTCTTTTGATATCTGACTAAAGGTCACAACCACATGTTTTGATGTCA
TTAAAAGAGTattacagaaaaattttccttgttGTTTCTCAAGATAATCT
CATGTTTTCGTACCATAAAATTAACGTCAAGTAGCTGGCTTATCTTTTCC
ACGTGGAAATTATGTTTATATAGAAATTGATAAATAAATTATAATTAATA
GACATGTGGGCTCAAACCAATTATTCGGTAATTAAAATTGGATTAAATCT
TAAGTTTTAAGCAACACGCCTCTGTAAGTCTAAAAAGTATAAATAGCTAA
AGAAGAGCATAaggtttatttcatttttcagctCGTTGATTCTGAGGAAA
TTTTAAGATGAAGGTAAGAATATTCATAATTATACGAGACACATTATCGA
TAAACATGCCgctcaatttttttgcctgtgaGTCGAAGGGTTATCTTTTC
CTTTTCAAGAACTTTGAACATCTTCTTTGACCTTCCAACGACGCTGTATA
GTAAAGCGGTTTATGCGTATGATAAAACTACTGAAAACTACTTGGCATAC
CAATGTCAATTCATTAGAATACGAATAATTATAGTCTCTTTTCACTTTAG
ACTCTTCTGTTCTTCCTGTTCCTTGCTACTCTTGCAACTTATGCTTGTGC
TTCAAAGCATCCTAAAGGATCCGATGACGACGTCGACTTTGGGGAAGACT
CCATATCCTCATTGCTGCGAAACGAAATCTTGAATAGGTAATTTCTTGGA
GATTCTCTTGCGATTAAGTAATTAAAACATAATATTTCTTACAAcctaaa
aagttcaatttttttttaaagttcttaAAGTCATGAACTTTAAAGCTGCT
ATCATTTTTATGTAGTGATGAGGAAAACGAAGATAACGATGATAATGAGA
TTGAAGACAATGAAGACTTTGAAGACGAGGAACTTTTACAGAAGAACATA
ATGCAAAAAGATCCATTTCTTTTTTCTGgaagaagacgaagaagaagaag
atgtgCGAGTCCTGCTAAAAAAAGTAAGTTTcgattttaatggttttttt
ataaaaactccCCTTCTGATAATGCAAATAATCGATTGCTGAACGCCGGT
ATGTGCCGTCAAAAAATGGCTTTCAGAATCGGACAATGCagcccttgagc
agtgaaaaggtaaccttacagtgtattttaccaaagacccttacagtgta
gtttgatttgatttcttatttttctgGAGCCACTTGAAAATGTACCTGAG
AGTCGACACAATTtcgcaaaacaaatcaaaatgggagTGAGTCAAAACTA
TAATGATACATTAGATCtttactgtcagacttgcaattcagcagtcccca
aacacacccttacagtgtattctgctaaaagaagacccttgtagtgcact
ctttcaaaagtacacccttacaatgTATTTagagggtctcgaaaaacctc
cccttaagggccgcacatGTCGTGGGTCGGACCATACGAGTGCCCCTCCC
CAGGGTTTTTTCGCCGCTCCAAAAAGAAAAGATCTGATTTGTTCGAAACA
GTTGCATCAGTTCTGTTTTAAGGACTATTATGATCTTTTGTTGTATAATG
CATACAACAAAAGATTTTAATAGTCCATAAAACAGAATTGATACTAATAG
ACAAAACATAGATTCTATCGTTTTGCGTTTAGAATGCCATGTGGAAACCA
ATGGCTGTGGATCGggcattttcacaaaaattccaTACACTTACAAGAAA
TTGTTGACTCCTGCATGCCACAAACACGATGTCTGTTATAGCTGTGTAAG
TCAATGATATATTTGATACTTTTTTGGCAAattcgaacccagtcccttag
tttACTTTTTATGATCCCGATAGCAGTAACGAAAGGTTGTGTTACACGTC
CATcggtaaaatcaaaaagtgatgCAGGTGGCTCTGGGTAAtaaattgac
tttttttctgCTTTGAGAATAGAGAGCTTGCAAGAACATATTTTTCGACG
AAACTTGTGCTCTACTTTTGCAACGAAATTTATAATCTCAGCTTGTATCC
GATTTGAAAGTTACACTGCGCACTTAAATTAAGAATGGTAAATATCTACA
AGAATTGTCaacaatttcaataattttcacGTAACACTTTTTTGTTAATT
CCAGGGCAAAAAATATGGTTGGTCACAAAAACCTTGTGATGTTCGGTTCA
AAAGTGACATGTATCGATTATGCAGGTGCAAGTTAACAGGATGGAGGGTT
GTTCTTCTACCGAATTGCTATAAAAGAGCATTACAAATGTACAGCATTGT
GCGTCTCCTCGGAAAGAACTTTTACAACAATGTTGCTTCGGATTGGTGCA
AAAGCTGTGTGATTCCATATGGAAGCCCTAATTATACtgtttgaattatt
ttcatcttttgatgaCCTCAGCTAAATTTCGATTAAATATAGACTATATT
TTTTGCTGTTGGCAATGTTAACGGACTTAAAGGATGGGCTTGAAGGACTT
AATGTAAAACACGCACGAACCCAACAAACTTTAACACGAACTATTTCTGC
TGTAGCCAAAGCAAAGTCATTTTGCATTTGAATGATACTTCgtcactttg
aaaattttttaatctaCC

Coding sequence (CDS) from alignment at scaffold_176:15878..19245+

>TCONS_00050496 ID=TCONS_00050496|Name=TCONS_00050496|organism=Clytia hemisphaerica|type=CDS|length=3270bp|location=Sequence derived from alignment at scaffold_176:15878..19245+ (Clytia hemisphaerica)
ATGAAGACTCTTCTGTTCTTCCTGTTCCTTGCTACTCTTGCAACTTATGC
TTGTGCTTCAAAGCATCCTAAAGGATCCGATGACGACGTCGACTTTGGGG
AAGACTCCATATCCTCATTGCTGCGAAACGAAATCTTGAATAGTGATGAG
GAAAACGAAGATAACGATGATAATGAGATTGAAGACAATGAAGACTTTGA
AGACGAGGAACTTTTACAGAAGAACATAATGCAAAAAGATCCATTTCTTT
TTTCTGgaagaagacgaagaagaagaagatgtgCGAGTCCTGCTAAAAAA
AAATGCCATGTGGAAACCAATGGCTGTGGATCGggcattttcacaaaaat
tccaTACACTTACAAGAAATTGTTGACTCCTGCATGCCACAAACACGATG
TCTGTTATAGCTGTGGCAAAAAATATGGTTGGTCACAAAAACCTTGTGAT
GTTCGGTTCAAAAGTGACATGTATCGATTATGCAGGTGCAAGTTAACAGG
ATGGAGGGTTGTTCTTCTACCGAATTGCTATAAAAGAGCATTACAAATGT
ACAGCATTGTGCGTCTCCTCGGAAAGAACTTTTACAACAATGTTGCTTCG
GATTGGTGCAAAAGCTGTGTGATTCCATATGGAAGCCCTAATTATACtgt
ttgaATGAAGACTCTTCTGTTCTTCCTGTTCCTTGCTACTCTTGCAACTT
ATGCTTGTGCTTCAAAGCATCCTAAAGGATCCGATGACGACGTCGACTTT
GGGGAAGACTCCATATCCTCATTGCTGCGAAACGAAATCTTGAATAGTGA
TGAGGAAAACGAAGATAACGATGATAATGAGATTGAAGACAATGAAGACT
TTGAAGACGAGGAACTTTTACAGAAGAACATAATGCAAAAAGATCCATTT
CTTTTTTCTGgaagaagacgaagaagaagaagatgtgCGAGTCCTGCTAA
AAAAAAATGCCATGTGGAAACCAATGGCTGTGGATCGggcattttcacaa
aaattccaTACACTTACAAGAAATTGTTGACTCCTGCATGCCACAAACAC
GATGTCTGTTATAGCTGTGGCAAAAAATATGGTTGGTCACAAAAACCTTG
TGATGTTCGGTTCAAAAGTGACATGTATCGATTATGCAGGTGCAAGTTAA
CAGGATGGAGGGTTGTTCTTCTACCGAATTGCTATAAAAGAGCATTACAA
ATGTACAGCATTGTGCGTCTCCTCGGAAAGAACTTTTACAACAATGTTGC
TTCGGATTGGTGCAAAAGCTGTGTGATTCCATATGGAAGCCCTAATTATA
CtgtttgaATGAAGACTCTTCTGTTCTTCCTGTTCCTTGCTACTCTTGCA
ACTTATGCTTGTGCTTCAAAGCATCCTAAAGGATCCGATGACGACGTCGA
CTTTGGGGAAGACTCCATATCCTCATTGCTGCGAAACGAAATCTTGAATA
GTGATGAGGAAAACGAAGATAACGATGATAATGAGATTGAAGACAATGAA
GACTTTGAAGACGAGGAACTTTTACAGAAGAACATAATGCAAAAAGATCC
ATTTCTTTTTTCTGgaagaagacgaagaagaagaagatgtgCGAGTCCTG
CTAAAAAAAAATGCCATGTGGAAACCAATGGCTGTGGATCGggcattttc
acaaaaattccaTACACTTACAAGAAATTGTTGACTCCTGCATGCCACAA
ACACGATGTCTGTTATAGCTGTGGCAAAAAATATGGTTGGTCACAAAAAC
CTTGTGATGTTCGGTTCAAAAGTGACATGTATCGATTATGCAGGTGCAAG
TTAACAGGATGGAGGGTTGTTCTTCTACCGAATTGCTATAAAAGAGCATT
ACAAATGTACAGCATTGTGCGTCTCCTCGGAAAGAACTTTTACAACAATG
TTGCTTCGGATTGGTGCAAAAGCTGTGTGATTCCATATGGAAGCCCTAAT
TATACtgtttgaATGAAGACTCTTCTGTTCTTCCTGTTCCTTGCTACTCT
TGCAACTTATGCTTGTGCTTCAAAGCATCCTAAAGGATCCGATGACGACG
TCGACTTTGGGGAAGACTCCATATCCTCATTGCTGCGAAACGAAATCTTG
AATAGTGATGAGGAAAACGAAGATAACGATGATAATGAGATTGAAGACAA
TGAAGACTTTGAAGACGAGGAACTTTTACAGAAGAACATAATGCAAAAAG
ATCCATTTCTTTTTTCTGgaagaagacgaagaagaagaagatgtgCGAGT
CCTGCTAAAAAAAAATGCCATGTGGAAACCAATGGCTGTGGATCGggcat
tttcacaaaaattccaTACACTTACAAGAAATTGTTGACTCCTGCATGCC
ACAAACACGATGTCTGTTATAGCTGTGGCAAAAAATATGGTTGGTCACAA
AAACCTTGTGATGTTCGGTTCAAAAGTGACATGTATCGATTATGCAGGTG
CAAGTTAACAGGATGGAGGGTTGTTCTTCTACCGAATTGCTATAAAAGAG
CATTACAAATGTACAGCATTGTGCGTCTCCTCGGAAAGAACTTTTACAAC
AATGTTGCTTCGGATTGGTGCAAAAGCTGTGTGATTCCATATGGAAGCCC
TAATTATACtgtttgaATGAAGACTCTTCTGTTCTTCCTGTTCCTTGCTA
CTCTTGCAACTTATGCTTGTGCTTCAAAGCATCCTAAAGGATCCGATGAC
GACGTCGACTTTGGGGAAGACTCCATATCCTCATTGCTGCGAAACGAAAT
CTTGAATAGTGATGAGGAAAACGAAGATAACGATGATAATGAGATTGAAG
ACAATGAAGACTTTGAAGACGAGGAACTTTTACAGAAGAACATAATGCAA
AAAGATCCATTTCTTTTTTCTGgaagaagacgaagaagaagaagatgtgC
GAGTCCTGCTAAAAAAAAATGCCATGTGGAAACCAATGGCTGTGGATCGg
gcattttcacaaaaattccaTACACTTACAAGAAATTGTTGACTCCTGCA
TGCCACAAACACGATGTCTGTTATAGCTGTGGCAAAAAATATGGTTGGTC
ACAAAAACCTTGTGATGTTCGGTTCAAAAGTGACATGTATCGATTATGCA
GGTGCAAGTTAACAGGATGGAGGGTTGTTCTTCTACCGAATTGCTATAAA
AGAGCATTACAAATGTACAGCATTGTGCGTCTCCTCGGAAAGAACTTTTA
CAACAATGTTGCTTCGGATTGGTGCAAAAGCTGTGTGATTCCATATGGAA
GCCCTAATTATACtgtttga

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_031977	XLOC_031977	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00050496-protein	TCONS_00050496-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_176	supercontig	scaffold_176:15878..19245 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0388489	0	0	0	0.0441124	0	0	0	0	0.022851	1.51959	3.21941	0.058449	0	3.18559	4.4071	35.14	51.7553	3.01182	2.56281	1.37166	1.32335	1.28455	1.41373	0	0	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR016090	PLipase_A2_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004623	phospholipase A2 activity

Vocabulary: **Biological Process**
Term	Definition
GO:0050482	arachidonic acid secretion
GO:0006644	phospholipid metabolic process

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050482	arachidonic acid secretion
biological_process	GO:0006644	phospholipid metabolic process
molecular_function	GO:0004623	phospholipase A2 activity

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00050496 vs. Swiss-Prot (Human)

BLAST of TCONS_00050496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00050496 (transcript) - C. hemisphaerica