TCONS_00050484 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050484
Unique NameTCONS_00050484
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length714

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050484 ID=TCONS_00050484|Name=TCONS_00050484|organism=Clytia hemisphaerica|type=transcript|length=714bp
tatattttttaataattttaataatttgGTTTATCTTAGCGTTTTATGAA
CAAGTTAATTCTCATTTAAATCTATCatttaaacaaattttctttatgaa
cttctaaataaaaacaaactcgCGTACTAAATAAACtaacaaataataaa
attttaggaaaaacatgaaaagccGGGTTAACAACTCGGTCCAActtcat
gacgtcattttcaaaattggaaaaattgaatgttttgataaattttacaa
gCTGTCTAAATGTAAATAAGCACCAGACAGAGTTAACTccacaaatgacg
tcattattccAATTATCGAGTTGTAAACTCGGGATTTTTTATTTCCccgg
gaaaaaaggaagaaaaactaacaaattttcatctactcgaaaagaaacat
aaaaataaacaacGGATAATCTATTTCattataatatataatacaataaG
TTTTGGGAATCATTTAGGTGAAGTATGATGACTCTGAATAAAAAAATGTC
AAGactcgagaaaaaaatgatcaaataaagTGTCTTGTTTGTGCTACCGT
GTGGAAACCATCCTAAAGGAAATTACTCTAACTATGGTTTCTacataaaa
gtcaaaaagagTGCATAGATGTCGTGAATGAATCTTCAggtttctcaaaa
tttttaccAATTATTTTCAAACAGTCTTGACATTTCTTCATCCAAACCGA
TTAGAAAGGAAANT
Run BLAST on NCBI

transcript from alignment at scaffold_173:33194..33907

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050484 ID=TCONS_00050484|Name=TCONS_00050484|organism=Clytia hemisphaerica|type=transcript|length=714bp|location=Sequence derived from alignment at scaffold_173:33194..33907 (Clytia hemisphaerica)
ANTTTCCTTTCTAATCGGTTTGGATGAAGAAATGTCAAGACTGTTTGAAA
ATAATTggtaaaaattttgagaaaccTGAAGATTCATTCACGACATCTAT
GCActctttttgacttttatgtAGAAACCATAGTTAGAGTAATTTCCTTT
AGGATGGTTTCCACACGGTAGCACAAACAAGACActttatttgatcattt
ttttctcgagtCTTGACATTTTTTTATTCAGAGTCATCATACTTCACCTA
AATGATTCCCAAAACttattgtattatatattataatGAAATAGATTATC
Cgttgtttatttttatgtttcttttcgagtagatgaaaatttgttagttt
ttcttccttttttcccggGGAAATAAAAAATCCCGAGTTTACAACTCGAT
AATTggaataatgacgtcatttgtggAGTTAACTCTGTCTGGTGCTTATT
TACATTTAGACAGcttgtaaaatttatcaaaacattcaatttttccaatt
ttgaaaatgacgtcatgaagTTGGACCGAGTTGTTAACCCggcttttcat
gtttttcctaaaattttattatttgttaGTTTATTTAGTACGcgagtttg
tttttatttagaagttcataaagaaaatttgtttaaatGATAGATTTAAA
TGAGAATTAACTTGTTCATAAAACGCTAAGATAAACcaaattattaaaat
tattaaaaaatata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031969XLOC_031969Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050484-exon-scaffold_173-1491911889:33194..33907TCONS_00050484-exon-scaffold_173-1491911889:33194..33907Clytia hemisphaericaexon
TCONS_00050484-exon-scaffold_173-1510915933:33194..33907TCONS_00050484-exon-scaffold_173-1510915933:33194..33907Clytia hemisphaericaexon
TCONS_00050484-exon-scaffold_173-1575043694:33194..33907TCONS_00050484-exon-scaffold_173-1575043694:33194..33907Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_173supercontigscaffold_173:33194..33907 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05379	0.342538	0.477264	0.233464	7.48446	2.77	13.0966	13.952	8.40652	7.25965	7.33109	4.21093	5.37315	5.24041	3.59028	3.51043	6.32864	6.00015	3.21126	4.14183	16.9132	17.2945	9.90773	10.4722	8.2216	11.3766	37.7617	32.0757	8.34336	8.18278
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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