|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050460 ID=TCONS_00050460|Name=TCONS_00050460|organism=Clytia hemisphaerica|type=transcript|length=3389bp ATTACAAACTTCTGGGTGGAAAAAACTTCTTGACAATAAATGCATGATGG GGAGGTGTTCTTTATACCCATGTAGCACCCCAGTGAGTTCTCTTTCATAT TTCCTAGATGTAGTTTTAACAAAGTCCTTCCAATAATCAAACTAAACAAT GGATACAAGAAGAAAGCATTGACATCAACAGATCAAACGAGGAACTTTTG AAAAACCCCATGCCAAGGTCAATGGACAAATACGAGAACCCAACCAAGTT GGTTTTGCATGATAATAAACAGCTCCTTTGAAAGGCTAAGCTTCTCCTGT AGGAACTTAATTATCCTTCAATACAAACACAAGACACCCACTAACGTACG TACGTGCCTCTATGGACATCTACGATGAAACTCTACGAAGGAGGGAGTAA TTTGTGTTTATGTGTGGCAATATGGTGAATGAAACACTCCTTCGTAGTGC TGTTCAGATTAGATATAAAGTGGGTTGACTGGGTTTACAAGGAAGGATAA ACATAAGGCCAGAACAGAGATACAACGGTGATTTAAGATGAAGGTCTCAA TCTTGGTCTGTTTTACAGCAATAATATGGATCAGTCTTGTACGTGCGCAA GCCTCCGATAGACGGGTTTGTTACTACACCAACTGGGCTCAATATCGGAA TGGAATAGGAAAATACTTTCCATCGGATTATGAAACCGGTTTATGTACAC ACATTATTTACGCATTTGCGAATGTTCTGGAAGATACAGATGGTTTTTAT TTGCATCCTTATGAGTGGAACGATCTGCAGCTAGGCTATCCAGGGGTCAA CAGTTTGAAGCATAACGATCCACAATTAAAAACGTTATTGGCGATCGGAG GTTGGAACTTTGGATCAGAAACGTTCTCAAAATTGGTGTCCGACATTGAT GACATGATGGTATTCGCCATTCGCTCCGCTGACTACTTGCAGTTGCATGA ATTCGACGGACTTGATTTGGATTGGGAATACCCCGGACACAGAGGAAGTC CACcagaagataaacaaagattCACAGAATTCTGCCAAATCCTCAAAGCA GAATATTCATCAAGAGGACTTCTCCTTACAGCCGCTGTTGCTGCTGGTCC CTCAACCGTCCAAGGGGCGTATGAAATATTACCAATCTCTAAGGAGTTGG ATTTCATCAACTTAATGGCTTATGATTTGTATGGAAGCTGGGGACCTTCG ACTGGCCACCACACCAATATGAATTCAAACAGCCCACTCAATGTAATTAG CTCCGTCGAAATATGGCTCGCCTCAGGTATGGACCCTGATAAATTAGTCC TGGGACTGGCACCATACGGCCGAACTTTTACTCTATCAGACAAATGCAAC AATGGCGTTGGAGCACCTTTTATTGCACCTGGCACACCAGGACCGTACAC AGGTGAAGCTGGCTTCAAAGCGTATTACGAAATTTGTAACAGCGCCTGGA CCAGTAAAGTTTGCACTGGGAATAGCGAGGCTCGAGCACCACACGGAGTA GCGAATGGCGTTTGGGTTGGTTTTGATGATGAAGAAAGCGTCGTGTACAA AGTCAACAATATTGTGAAAGACATGGGTTTAGGAGGAATCATGTTTTGGG CGCTTGATTTGGATGATTTTACTGGATCATGTGGAGGTGAGAAATATCCA ATCATAAAGGCAGCAAATCGCGCTTTATTGGAAGAAAATGCACCAGTCTT TTCATCATGTCAAGATTTTTCCGATTGCGGAGGAATCAAACCTACAACAA CATCAACAACGACAAAGTCTACAGTTCGCCCACCAGTTTCTACCTCCACT ACGACGACTTCCCTTCCTTCAGGAGGTTGCCAAATGCCTCCAGTAAGTGA ACGAAAAGAATGCTGGCTCAACAAAGACGGTCCTTGGGGAAAACAACCAT CTATTGAACAATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAAT AAACAAATGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTAC AACCACAACGACTATaccgacaacaacaacaacttcaCCGCTTATTTCtc caacaacaacgaccacaaCTCAGTCCACAACGAAATCAACCACCCAAAGC ACTACACGAAGCTCCACTACCAAATCAACAACACAGAGCActtcaacaac aaaagaaacaccAAAACCGACCCTTCCACCACCAACCTCAAGCACGACAA CCACACAACCTTTAGGAGGTTGTCAAATGCCTCCTGTAAGCGACCGAAAA GAATGCTGGCTCAACAAAGAAGGCCCATGGGGAAATAACCCAGCTATCGG ACCATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAATGAACAAA TGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTACAACGACG ACGACGACAATTTCCCCTACAACAACCTCCAGCACGACCAAGTCATCTAC GAAACCAACGACACAACGTACAACAACTATCACTCAACCAACAGAGAGCT CTACAACAACCACTCAGCAGCCTCCCAACACATGTTTCCTTCCAGCCTAC GGGAAACGTAAAAACTGCAAATCTAACCCAAATGGTATTCTTGCAGAATT CAAAGAAATTGATCAATTTTGTCGCGCTGGTTGTGAGACCGACCCCAAGT GCTGTGAAGAACTTTGTTGCTGTGAGGAAAAAGATATGACAACAGACAGC ACAACAACCACGACCAAaccaacgactactacaacACAACCGACAAGCAC CACGACAACAACAACCATGACCaaaccaacaactactacaactaaatcaa ccacaacaacaacaactgaGCAGCCATCAGGAGAATGTGAGATGCCAGAA CTCTTAGATCGAACTGAATGTTGGTTGAATGAGGATGGTCCGTTTAAATC GAGTGTTGGAATGCACAAATGGTGTATGAACACTTGTGTTGTTGATCCTT CTTGTACGACCCTCTACTGCTGTTGTCAGTGAAAATAAAGACACAAAACT TTGAACCATAAAATATGGACAATAAAGACAGTCTTCAAATAGGTCATATC ATTTATGATTCTCATAAACTTAGCTCAAATTTTATGGTTATCCTGTAAAT AAACGAAATATTATACAATTGTGAATTACAGCTTTTGGTGTTAGAGGCAT CTAATGTATATCGAAAAATTTACTATTTGAACAGTATTCATTTATTTGGG aaattttaataactttttacctTTATTATATTGCGAAAGAAACTTTATGA TATTATATCTATACCTCATGTTAATCGCCGAAACATCCCTTAATTCCAAA TGAAGATTTGACAAAGATATAGAGGTTTTTCAAGTTTACTAAGTTACGTA AATTAAGCCATCAAAGCAAACGTTCAATTTGCATAAGTA Run BLAST on NCBI protein sequence of TCONS_00050460-protein >TCONS_00050460-protein ID=TCONS_00050460-protein|Name=TCONS_00050460-protein|organism=Clytia hemisphaerica|type=polypeptide|length=814bp
MKVSILVCFTAIIWISLVRAQASDRRVCYYTNWAQYRNGIGKYFPSDYET GLCTHIIYAFANVLEDTDGFYLHPYEWNDLQLGYPGVNSLKHNDPQLKTL LAIGGWNFGSETFSKLVSDIDDMMVFAIRSADYLQLHEFDGLDLDWEYPG HRGSPPEDKQRFTEFCQILKAEYSSRGLLLTAAVAAGPSTVQGAYEILPI SKELDFINLMAYDLYGSWGPSTGHHTNMNSNSPLNVISSVEIWLASGMDP DKLVLGLAPYGRTFTLSDKCNNGVGAPFIAPGTPGPYTGEAGFKAYYEIC NSAWTSKVCTGNSEARAPHGVANGVWVGFDDEESVVYKVNNIVKDMGLGG IMFWALDLDDFTGSCGGEKYPIIKAANRALLEENAPVFSSCQDFSDCGGI KPTTTSTTTKSTVRPPVSTSTTTTSLPSGGCQMPPVSERKECWLNKDGPW GKQPSIEQWCATSCKTDPSCNKQMCCCKGSTTPTTTTTTTTTIPTTTTTS PLISPTTTTTTQSTTKSTTQSTTRSSTTKSTTQSTSTTKETPKPTLPPPT SSTTTTQPLGGCQMPPVSDRKECWLNKEGPWGNNPAIGPWCATSCKTDPS CNEQMCCCKGSTTPTTTTTTTTTTISPTTTSSTTKSSTKPTTQRTTTITQ PTESSTTTTQQPPNTCFLPAYGKRKNCKSNPNGILAEFKEIDQFCRAGCE TDPKCCEELCCCEEKDMTTDSTTTTTKPTTTTTQPTSTTTTTTMTKPTTT TTKSTTTTTTEQPSGECEMPELLDRTECWLNEDGPFKSSVGMHKWCMNTC VVDPSCTTLYCCCQ Run BLAST on NCBI transcript from alignment at scaffold_172:14763..18558- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050460 ID=TCONS_00050460|Name=TCONS_00050460|organism=Clytia hemisphaerica|type=transcript|length=3796bp|location=Sequence derived from alignment at scaffold_172:14763..18558- (Clytia hemisphaerica) ATTACAAACTTCTGGGTGGAAAAAACTTCTTGACAATAAATGCATGATGG
GGAGGTGTTCTTTATACCCATGTAGCACCCCAGTGAGTTCTCTTTCATAT
TTCCTAGATGTAGTTTTAACAAAGTCCTTCCAATAATCAAACTAAACAAT
GGATACAAGAAGAAAGCATTGACATCAACAGATCAAACGAGGAACTTTTG
AAAAACCCCATGCCAAGGTCAATGGACAAATACGAGAACCCAACCAAGTT
GGTTTTGCATGATAATAAACAGCTCCTTTGAAAGGCTAAGCTTCTCCTGT
AGGAACTTAATTATCCTTCAATACAAACACAAGACACCCACTAACGTACG
TACGTGCCTCTATGGACATCTACGATGAAACTCTACGAAGGAGGGAGTAA
TTTGTGTTTATGTGTGGCAATATGGTGAATGAAACACTCCTTCGTAGTGC
TGTTCAGATTAGATATAAAGTGGGTTGACTGGGTTTACAAGGAAGGATAA
ACATAAGGCCAGAACAGAGATACAACGGTGATTTAAGATGAAGGTCTCAA
TCTTGGTCTGTTTTACAGCAATAATATGGATCAGTCTTGTACGTGCGCAA
GCCTCCGATAGACGGGTTTGTTACTACACCAACTGGGCTCAATATCGGAA
TGGAATAGGAAAATACTTTCCATCGGATTATGAAACCGGTTTATGTACAC
ACATTATTTACGCATTTGCGAATGTTCTGGAAGATACAGATGGTTTTTAT
TTGCATCCTTATGAGTGGAACGATCTGCAGCTAGGCTATCCAGGGGTAAG
TACAGTTTTTTTTCTAAAATCAATCGGTTGGAGACGAACAAATCCAGAAA
AAATTATGATAGCTTCAACAATGCATTATGATCTATAACAACTTAATATT
TCTCTCAAACGCATCCAGGTCAACAGTTTGAAGCATAACGATCCACAATT
AAAAACGTTATTGGCGATCGGAGGTTGGAACTTTGGATCAGAAACGTTCT
CAAAATTGGTGTCCGACATTGATGACATGATGGTATTCGCCATTCGCTCC
GCTGACTACTTGCAGTTGCATGGTGAGTTTCTCTCACGTTCGCGCGATGA
TTTCGCGCAGTAGACCACAACGCTGACGTTTTCAATCGAGGTCTATGTGC
ATGGGTGGTTAGCCTGGGTTAGCCACTCTGATGATAATAGTTGAACGGAG
TTTCAACATTATGCATCTTGTCGTCGTGCGTTATTTGGATACAGTCTAAA
CATCTCGGGTTCACAACTAAGTACTTGCCACGTATCTACCAGAGACTTAG
TTAACTTCATGAATTGAATACATACAACAGTGTAACTGATAGTTTCTTTT
CTTTAGAATTCGACGGACTTGATTTGGATTGGGAATACCCCGGACACAGA
GGAAGTCCACCAGAAGATAAACAAAGATTCACAGAATTCTGCCAAATCCT
CAAAGCAGAATATTCATCAAGAGGACTTCTCCTTACAGCCGCTGTTGCTG
CTGGTCCCTCAACCGTCCAAGGGGCGTATGAAATATTACCAATCTCTAAG
GAGTTGGATTTCATCAACTTAATGGCTTATGATTTGTATGGAAGCTGGGG
ACCTTCGACTGGCCACCACACCAATATGAATTCAAACAGCCCACTCAATG
TAATTAGCTCCGTCGAAATATGGCTCGCCTCAGGTATGGACCCTGATAAA
TTAGTCCTGGGACTGGCACCATACGGCCGAACTTTTACTCTATCAGACAA
ATGCAACAATGGCGTTGGAGCACCTTTTATTGCACCTGGCACACCAGGAC
CGTACACAGGTGAAGCTGGCTTCAAAGCGTATTACGAAATTTGTAACAGC
GCCTGGACCAGTAAAGTTTGCACTGGGAATAGCGAGGCTCGAGCACCACA
CGGAGTAGCGAATGGCGTTTGGGTTGGTTTTGATGATGAAGAAAGCGTCG
TGTACAAAGTCAACAATATTGTGAAAGACATGGGTTTAGGAGGAATCATG
TTTTGGGCGCTTGATTTGGATGATTTTACTGGATCATGTGGAGGTGAGAA
ATATCCAATCATAAAGGCAGCAAATCGCGCTTTATTGGAAGAAAATGCAC
CAGTCTTTTCATCATGTCAAGATTTTTCCGATTGCGGAGGAATCAAACCT
ACAACAACATCAACAACGACAAAGTCTACAGTTCGCCCACCAGTTTCTAC
CTCCACTACGACGACTTCCCTTCCTTCAGGAGGTTGCCAAATGCCTCCAG
TAAGTGAACGAAAAGAATGCTGGCTCAACAAAGACGGTCCTTGGGGAAAA
CAACCATCTATTGAACAATGGTGTGCCACGAGTTGTAAAACCGACCCGAG
TTGCAATAAACAAATGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAA
CTACTACAACCACAACGACTATACCGACAACAACAACAACTTCACCGCTT
ATTTCTCCAACAACAACGACCACAACTCAGTCCACAACGAAATCAACCAC
CCAAAGCACTACACGAAGCTCCACTACCAAATCAACAACACAGAGCACTT
CAACAACAAAAGAAACACCAAAACCGACCCTTCCACCACCAACCTCAAGC
ACGACAACCACACAACCTTTAGGAGGTTGTCAAATGCCTCCTGTAAGCGA
CCGAAAAGAATGCTGGCTCAACAAAGAAGGCCCATGGGGAAATAACCCAG
CTATCGGACCATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAAT
GAACAAATGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTAC
AACGACGACGACGACAATTTCCCCTACAACAACCTCCAGCACGACCAAGT
CATCTACGAAACCAACGACACAACGTACAACAACTATCACTCAACCAACA
GAGAGCTCTACAACAACCACTCAGCAGCCTCCCAACACATGTTTCCTTCC
AGCCTACGGGAAACGTAAAAACTGCAAATCTAACCCAAATGGTATTCTTG
CAGAATTCAAAGAAATTGATCAATTTTGTCGCGCTGGTTGTGAGACCGAC
CCCAAGTGCTGTGAAGAACTTTGTTGCTGTGAGGAAAAAGATATGACAAC
AGACAGCACAACAACCACGACCAAACCAACGACTACTACAACACAACCGA
CAAGCACCACGACAACAACAACCATGACCAAACCAACAACTACTACAACT
AAATCAACCACAACAACAACAACTGAGCAGCCATCAGGAGAATGTGAGAT
GCCAGAACTCTTAGATCGAACTGAATGTTGGTTGAATGAGGATGGTCCGT
TTAAATCGAGTGTTGGAATGCACAAATGGTGTATGAACACTTGTGTTGTT
GATCCTTCTTGTACGACCCTCTACTGCTGTTGTCAGTGAAAATAAAGACA
CAAAACTTTGAACCATAAAATATGGACAATAAAGACAGTCTTCAAATAGG
TCATATCATTTATGATTCTCATAAACTTAGCTCAAATTTTATGGTTATCC
TGTAAATAAACGAAATATTATACAATTGTGAATTACAGCTTTTGGTGTTA
GAGGCATCTAATGTATATCGAAAAATTTACTATTTGAACAGTATTCATTT
ATTTGGGAAATTTTAATAACTTTTTACCTTTATTATATTGCGAAAGAAAC
TTTATGATATTATATCTATACCTCATGTTAATCGCCGAAACATCCCTTAA
TTCCAAATGAAGATTTGACAAAGATATAGAGGTTTTTCAAGTTTACTAAG
TTACGTAAATTAAGCCATCAAAGCAAACGTTCAATTTGCATAAGTA Coding sequence (CDS) from alignment at scaffold_172:14763..18558- >TCONS_00050460 ID=TCONS_00050460|Name=TCONS_00050460|organism=Clytia hemisphaerica|type=CDS|length=7335bp|location=Sequence derived from alignment at scaffold_172:14763..18558- (Clytia hemisphaerica) AATTCGACGGACTTGATTTGGATTGGGAATACCCCGGACACAGAGGAAGT CCACCAGAAGATAAACAAAGATTCACAGAATTCTGCCAAATCCTCAAAGC AGAATATTCATCAAGAGGACTTCTCCTTACAGCCGCTGTTGCTGCTGGTC CCTCAACCGTCCAAGGGGCGTATGAAATATTACCAATCTCTAAGGAGTTG GATTTCATCAACTTAATGGCTTATGATTTGTATGGAAGCTGGGGACCTTC GACTGGCCACCACACCAATATGAATTCAAACAGCCCACTCAATGTAATTA GCTCCGTCGAAATATGGCTCGCCTCAGGTATGGACCCTGATAAATTAGTC CTGGGACTGGCACCATACGGCCGAACTTTTACTCTATCAGACAAATGCAA CAATGGCGTTGGAGCACCTTTTATTGCACCTGGCACACCAGGACCGTACA CAGGTGAAGCTGGCTTCAAAGCGTATTACGAAATTTGTAACAGCGCCTGG ACCAGTAAAGTTTGCACTGGGAATAGCGAGGCTCGAGCACCACACGGAGT AGCGAATGGCGTTTGGGTTGGTTTTGATGATGAAGAAAGCGTCGTGTACA AAGTCAACAATATTGTGAAAGACATGGGTTTAGGAGGAATCATGTTTTGG GCGCTTGATTTGGATGATTTTACTGGATCATGTGGAGGTGAGAAATATCC AATCATAAAGGCAGCAAATCGCGCTTTATTGGAAGAAAATGCACCAGTCT TTTCATCATGTCAAGATTTTTCCGATTGCGGAGGAATCAAACCTACAACA ACATCAACAACGACAAAGTCTACAGTTCGCCCACCAGTTTCTACCTCCAC TACGACGACTTCCCTTCCTTCAGGAGGTTGCCAAATGCCTCCAGTAAGTG AACGAAAAGAATGCTGGCTCAACAAAGACGGTCCTTGGGGAAAACAACCA TCTATTGAACAATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAA TAAACAAATGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTA CAACCACAACGACTATACCGACAACAACAACAACTTCACCGCTTATTTCT CCAACAACAACGACCACAACTCAGTCCACAACGAAATCAACCACCCAAAG CACTACACGAAGCTCCACTACCAAATCAACAACACAGAGCACTTCAACAA CAAAAGAAACACCAAAACCGACCCTTCCACCACCAACCTCAAGCACGACA ACCACACAACCTTTAGGAGGTTGTCAAATGCCTCCTGTAAGCGACCGAAA AGAATGCTGGCTCAACAAAGAAGGCCCATGGGGAAATAACCCAGCTATCG GACCATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAATGAACAA ATGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTACAACGAC GACGACGACAATTTCCCCTACAACAACCTCCAGCACGACCAAGTCATCTA CGAAACCAACGACACAACGTACAACAACTATCACTCAACCAACAGAGAGC TCTACAACAACCACTCAGCAGCCTCCCAACACATGTTTCCTTCCAGCCTA CGGGAAACGTAAAAACTGCAAATCTAACCCAAATGGTATTCTTGCAGAAT TCAAAGAAATTGATCAATTTTGTCGCGCTGGTTGTGAGACCGACCCCAAG TGCTGTGAAGAACTTTGTTGCTGTGAGGAAAAAGATATGACAACAGACAG CACAACAACCACGACCAAACCAACGACTACTACAACACAACCGACAAGCA CCACGACAACAACAACCATGACCAAACCAACAACTACTACAACTAAATCA ACCACAACAACAACAACTGAGCAGCCATCAGGAGAATGTGAGATGCCAGA ACTCTTAGATCGAACTGAATGTTGGTTGAATGAGGATGGTCCGTTTAAAT CGAGTGTTGGAATGCACAAATGGTGTATGAACACTTGTGTTGTTGATCCT TCTTGTACGACCCTCTACTGCTGTTGTCAGTGAGTCAACAGTTTGAAGCA TAACGATCCACAATTAAAAACGTTATTGGCGATCGGAGGTTGGAACTTTG GATCAGAAACGTTCTCAAAATTGGTGTCCGACATTGATGACATGATGGTA TTCGCCATTCGCTCCGCTGACTACTTGCAGTTGCATGATGAAGGTCTCAA TCTTGGTCTGTTTTACAGCAATAATATGGATCAGTCTTGTACGTGCGCAA GCCTCCGATAGACGGGTTTGTTACTACACCAACTGGGCTCAATATCGGAA TGGAATAGGAAAATACTTTCCATCGGATTATGAAACCGGTTTATGTACAC ACATTATTTACGCATTTGCGAATGTTCTGGAAGATACAGATGGTTTTTAT TTGCATCCTTATGAGTGGAACGATCTGCAGCTAGGCTATCCAGGGAATTC GACGGACTTGATTTGGATTGGGAATACCCCGGACACAGAGGAAGTCCACC AGAAGATAAACAAAGATTCACAGAATTCTGCCAAATCCTCAAAGCAGAAT ATTCATCAAGAGGACTTCTCCTTACAGCCGCTGTTGCTGCTGGTCCCTCA ACCGTCCAAGGGGCGTATGAAATATTACCAATCTCTAAGGAGTTGGATTT CATCAACTTAATGGCTTATGATTTGTATGGAAGCTGGGGACCTTCGACTG GCCACCACACCAATATGAATTCAAACAGCCCACTCAATGTAATTAGCTCC GTCGAAATATGGCTCGCCTCAGGTATGGACCCTGATAAATTAGTCCTGGG ACTGGCACCATACGGCCGAACTTTTACTCTATCAGACAAATGCAACAATG GCGTTGGAGCACCTTTTATTGCACCTGGCACACCAGGACCGTACACAGGT GAAGCTGGCTTCAAAGCGTATTACGAAATTTGTAACAGCGCCTGGACCAG TAAAGTTTGCACTGGGAATAGCGAGGCTCGAGCACCACACGGAGTAGCGA ATGGCGTTTGGGTTGGTTTTGATGATGAAGAAAGCGTCGTGTACAAAGTC AACAATATTGTGAAAGACATGGGTTTAGGAGGAATCATGTTTTGGGCGCT TGATTTGGATGATTTTACTGGATCATGTGGAGGTGAGAAATATCCAATCA TAAAGGCAGCAAATCGCGCTTTATTGGAAGAAAATGCACCAGTCTTTTCA TCATGTCAAGATTTTTCCGATTGCGGAGGAATCAAACCTACAACAACATC AACAACGACAAAGTCTACAGTTCGCCCACCAGTTTCTACCTCCACTACGA CGACTTCCCTTCCTTCAGGAGGTTGCCAAATGCCTCCAGTAAGTGAACGA AAAGAATGCTGGCTCAACAAAGACGGTCCTTGGGGAAAACAACCATCTAT TGAACAATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAATAAAC AAATGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTACAACC ACAACGACTATACCGACAACAACAACAACTTCACCGCTTATTTCTCCAAC AACAACGACCACAACTCAGTCCACAACGAAATCAACCACCCAAAGCACTA CACGAAGCTCCACTACCAAATCAACAACACAGAGCACTTCAACAACAAAA GAAACACCAAAACCGACCCTTCCACCACCAACCTCAAGCACGACAACCAC ACAACCTTTAGGAGGTTGTCAAATGCCTCCTGTAAGCGACCGAAAAGAAT GCTGGCTCAACAAAGAAGGCCCATGGGGAAATAACCCAGCTATCGGACCA TGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAATGAACAAATGTG TTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTACAACGACGACGA CGACAATTTCCCCTACAACAACCTCCAGCACGACCAAGTCATCTACGAAA CCAACGACACAACGTACAACAACTATCACTCAACCAACAGAGAGCTCTAC AACAACCACTCAGCAGCCTCCCAACACATGTTTCCTTCCAGCCTACGGGA AACGTAAAAACTGCAAATCTAACCCAAATGGTATTCTTGCAGAATTCAAA GAAATTGATCAATTTTGTCGCGCTGGTTGTGAGACCGACCCCAAGTGCTG TGAAGAACTTTGTTGCTGTGAGGAAAAAGATATGACAACAGACAGCACAA CAACCACGACCAAACCAACGACTACTACAACACAACCGACAAGCACCACG ACAACAACAACCATGACCAAACCAACAACTACTACAACTAAATCAACCAC AACAACAACAACTGAGCAGCCATCAGGAGAATGTGAGATGCCAGAACTCT TAGATCGAACTGAATGTTGGTTGAATGAGGATGGTCCGTTTAAATCGAGT GTTGGAATGCACAAATGGTGTATGAACACTTGTGTTGTTGATCCTTCTTG TACGACCCTCTACTGCTGTTGTCAGTGAGTCAACAGTTTGAAGCATAACG ATCCACAATTAAAAACGTTATTGGCGATCGGAGGTTGGAACTTTGGATCA GAAACGTTCTCAAAATTGGTGTCCGACATTGATGACATGATGGTATTCGC CATTCGCTCCGCTGACTACTTGCAGTTGCATGATGAAGGTCTCAATCTTG GTCTGTTTTACAGCAATAATATGGATCAGTCTTGTACGTGCGCAAGCCTC CGATAGACGGGTTTGTTACTACACCAACTGGGCTCAATATCGGAATGGAA TAGGAAAATACTTTCCATCGGATTATGAAACCGGTTTATGTACACACATT ATTTACGCATTTGCGAATGTTCTGGAAGATACAGATGGTTTTTATTTGCA TCCTTATGAGTGGAACGATCTGCAGCTAGGCTATCCAGGGAATTCGACGG ACTTGATTTGGATTGGGAATACCCCGGACACAGAGGAAGTCCACCAGAAG ATAAACAAAGATTCACAGAATTCTGCCAAATCCTCAAAGCAGAATATTCA TCAAGAGGACTTCTCCTTACAGCCGCTGTTGCTGCTGGTCCCTCAACCGT CCAAGGGGCGTATGAAATATTACCAATCTCTAAGGAGTTGGATTTCATCA ACTTAATGGCTTATGATTTGTATGGAAGCTGGGGACCTTCGACTGGCCAC CACACCAATATGAATTCAAACAGCCCACTCAATGTAATTAGCTCCGTCGA AATATGGCTCGCCTCAGGTATGGACCCTGATAAATTAGTCCTGGGACTGG CACCATACGGCCGAACTTTTACTCTATCAGACAAATGCAACAATGGCGTT GGAGCACCTTTTATTGCACCTGGCACACCAGGACCGTACACAGGTGAAGC TGGCTTCAAAGCGTATTACGAAATTTGTAACAGCGCCTGGACCAGTAAAG TTTGCACTGGGAATAGCGAGGCTCGAGCACCACACGGAGTAGCGAATGGC GTTTGGGTTGGTTTTGATGATGAAGAAAGCGTCGTGTACAAAGTCAACAA TATTGTGAAAGACATGGGTTTAGGAGGAATCATGTTTTGGGCGCTTGATT TGGATGATTTTACTGGATCATGTGGAGGTGAGAAATATCCAATCATAAAG GCAGCAAATCGCGCTTTATTGGAAGAAAATGCACCAGTCTTTTCATCATG TCAAGATTTTTCCGATTGCGGAGGAATCAAACCTACAACAACATCAACAA CGACAAAGTCTACAGTTCGCCCACCAGTTTCTACCTCCACTACGACGACT TCCCTTCCTTCAGGAGGTTGCCAAATGCCTCCAGTAAGTGAACGAAAAGA ATGCTGGCTCAACAAAGACGGTCCTTGGGGAAAACAACCATCTATTGAAC AATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAATAAACAAATG TGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTACAACCACAAC GACTATACCGACAACAACAACAACTTCACCGCTTATTTCTCCAACAACAA CGACCACAACTCAGTCCACAACGAAATCAACCACCCAAAGCACTACACGA AGCTCCACTACCAAATCAACAACACAGAGCACTTCAACAACAAAAGAAAC ACCAAAACCGACCCTTCCACCACCAACCTCAAGCACGACAACCACACAAC CTTTAGGAGGTTGTCAAATGCCTCCTGTAAGCGACCGAAAAGAATGCTGG CTCAACAAAGAAGGCCCATGGGGAAATAACCCAGCTATCGGACCATGGTG TGCCACGAGTTGTAAAACCGACCCGAGTTGCAATGAACAAATGTGTTGCT GTAAAGGTTCAACGACTCCCACAACAACTACTACAACGACGACGACGACA ATTTCCCCTACAACAACCTCCAGCACGACCAAGTCATCTACGAAACCAAC GACACAACGTACAACAACTATCACTCAACCAACAGAGAGCTCTACAACAA CCACTCAGCAGCCTCCCAACACATGTTTCCTTCCAGCCTACGGGAAACGT AAAAACTGCAAATCTAACCCAAATGGTATTCTTGCAGAATTCAAAGAAAT TGATCAATTTTGTCGCGCTGGTTGTGAGACCGACCCCAAGTGCTGTGAAG AACTTTGTTGCTGTGAGGAAAAAGATATGACAACAGACAGCACAACAACC ACGACCAAACCAACGACTACTACAACACAACCGACAAGCACCACGACAAC AACAACCATGACCAAACCAACAACTACTACAACTAAATCAACCACAACAA CAACAACTGAGCAGCCATCAGGAGAATGTGAGATGCCAGAACTCTTAGAT CGAACTGAATGTTGGTTGAATGAGGATGGTCCGTTTAAATCGAGTGTTGG AATGCACAAATGGTGTATGAACACTTGTGTTGTTGATCCTTCTTGTACGA CCCTCTACTGCTGTTGTCAGTGAGTCAACAGTTTGAAGCATAACGATCCA CAATTAAAAACGTTATTGGCGATCGGAGGTTGGAACTTTGGATCAGAAAC GTTCTCAAAATTGGTGTCCGACATTGATGACATGATGGTATTCGCCATTC GCTCCGCTGACTACTTGCAGTTGCATGATGAAGGTCTCAATCTTGGTCTG TTTTACAGCAATAATATGGATCAGTCTTGTACGTGCGCAAGCCTCCGATA GACGGGTTTGTTACTACACCAACTGGGCTCAATATCGGAATGGAATAGGA AAATACTTTCCATCGGATTATGAAACCGGTTTATGTACACACATTATTTA CGCATTTGCGAATGTTCTGGAAGATACAGATGGTTTTTATTTGCATCCTT ATGAGTGGAACGATCTGCAGCTAGGCTATCCAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00050460-exon-scaffold_172-1575043694:17764..18558 | TCONS_00050460-exon-scaffold_172-1575043694:17764..18558 | Clytia hemisphaerica | exon |
TCONS_00050460-exon-scaffold_172-1575043694:17487..17640 | TCONS_00050460-exon-scaffold_172-1575043694:17487..17640 | Clytia hemisphaerica | exon |
TCONS_00050460-exon-scaffold_172-1575043694:14763..17202 | TCONS_00050460-exon-scaffold_172-1575043694:14763..17202 | Clytia hemisphaerica | exon |
TCONS_00050460-exon-scaffold_172-1510915933:17764..18558 | TCONS_00050460-exon-scaffold_172-1510915933:17764..18558 | Clytia hemisphaerica | exon |
TCONS_00050460-exon-scaffold_172-1510915933:17487..17640 | TCONS_00050460-exon-scaffold_172-1510915933:17487..17640 | Clytia hemisphaerica | exon |
TCONS_00050460-exon-scaffold_172-1510915933:14763..17202 | TCONS_00050460-exon-scaffold_172-1510915933:14763..17202 | Clytia hemisphaerica | exon |
TCONS_00050460-exon-scaffold_172-1491911889:17764..18558 | TCONS_00050460-exon-scaffold_172-1491911889:17764..18558 | Clytia hemisphaerica | exon |
TCONS_00050460-exon-scaffold_172-1491911889:17487..17640 | TCONS_00050460-exon-scaffold_172-1491911889:17487..17640 | Clytia hemisphaerica | exon |
TCONS_00050460-exon-scaffold_172-1491911889:14763..17202 | TCONS_00050460-exon-scaffold_172-1491911889:14763..17202 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_172 | supercontig | scaffold_172:14763..18558 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0008061 | chitin binding |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
Vocabulary: Biological Process
Term | Definition |
GO:0005975 | carbohydrate metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0005975 |
carbohydrate metabolic process |
molecular_function |
GO:0008061 |
chitin binding |
molecular_function |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
Blast
BLAST of TCONS_00050460 vs. Swiss-Prot (Human)
Match: CHIT1 (Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1) HSP 1 Score: 317.39 bits (812), Expect = 3.548e-96 Identity = 167/389 (42.93%), Postives = 230/389 (59.13%), Query Frame = 1
Query: 556 VCFTAIIWISLVRAQASDRRVCYYTNWAQYRNGIGKYFPSDYETGLCTHIIYAFANVLEDTDGFYLHPYEWNDLQLGYPGVNSLKHNDPQLKTLLAIGGWNFGSETFSKLVSDIDDMMVFAIRSADYLQLHEFDGLDLDWEYPGHRGSPPEDKQRFTEFCQILKAEYSSRG-------LLLTAAVAAGPSTVQGAYEILPISKELDFINLMAYDLYGSWGPSTGHHTNM-------NSNSPLNVISSVEIWLASGMDPDKLVLGLAPYGRTFTLSDKCNNGVGAPFIAPGTPGPYTGEAGFKAYYEICNSAWTSKVCTGNSEARAPHGVANGVWVGFDDEESVVYKVNNIVKDMGLGGIMFWALDLDDFTG-SCGGEKYPIIKAANRAL 1677
V + + + ++ ++ + VCY+TNWAQYR G ++ P D + LCTH+IYAFA + L EWND L Y N LK +P+LKTLLAIGGWNFG++ F+ +V+ ++ F + +L+ + FDGLDLDWEYPG +GSP DK+RFT Q L + LLL+AAV AG + V YE+ I++ LDF+NLMAYD +GSW TGH++ + + + LNV ++V+ WL G KL+LG+ YGR+FTL+ + VGAP GTPGP+T E G AYYE+C +W + + P+ + WVGFDD ES KV + +K GLGG M WALDLDDF G SC +YP+I+ + L
Sbjct: 5 VAWAGFMVLLMIPWGSAAKLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQ----LSTTEWNDETL-YQEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVC--SWKGATKQRIQDQKVPYIFRDNQWVGFDDVESFKTKV-SYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQEL 385
The following BLAST results are available for this feature:
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