TCONS_00050460 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050460
Unique NameTCONS_00050460
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050460 ID=TCONS_00050460|Name=TCONS_00050460|organism=Clytia hemisphaerica|type=transcript|length=3389bp
ATTACAAACTTCTGGGTGGAAAAAACTTCTTGACAATAAATGCATGATGG
GGAGGTGTTCTTTATACCCATGTAGCACCCCAGTGAGTTCTCTTTCATAT
TTCCTAGATGTAGTTTTAACAAAGTCCTTCCAATAATCAAACTAAACAAT
GGATACAAGAAGAAAGCATTGACATCAACAGATCAAACGAGGAACTTTTG
AAAAACCCCATGCCAAGGTCAATGGACAAATACGAGAACCCAACCAAGTT
GGTTTTGCATGATAATAAACAGCTCCTTTGAAAGGCTAAGCTTCTCCTGT
AGGAACTTAATTATCCTTCAATACAAACACAAGACACCCACTAACGTACG
TACGTGCCTCTATGGACATCTACGATGAAACTCTACGAAGGAGGGAGTAA
TTTGTGTTTATGTGTGGCAATATGGTGAATGAAACACTCCTTCGTAGTGC
TGTTCAGATTAGATATAAAGTGGGTTGACTGGGTTTACAAGGAAGGATAA
ACATAAGGCCAGAACAGAGATACAACGGTGATTTAAGATGAAGGTCTCAA
TCTTGGTCTGTTTTACAGCAATAATATGGATCAGTCTTGTACGTGCGCAA
GCCTCCGATAGACGGGTTTGTTACTACACCAACTGGGCTCAATATCGGAA
TGGAATAGGAAAATACTTTCCATCGGATTATGAAACCGGTTTATGTACAC
ACATTATTTACGCATTTGCGAATGTTCTGGAAGATACAGATGGTTTTTAT
TTGCATCCTTATGAGTGGAACGATCTGCAGCTAGGCTATCCAGGGGTCAA
CAGTTTGAAGCATAACGATCCACAATTAAAAACGTTATTGGCGATCGGAG
GTTGGAACTTTGGATCAGAAACGTTCTCAAAATTGGTGTCCGACATTGAT
GACATGATGGTATTCGCCATTCGCTCCGCTGACTACTTGCAGTTGCATGA
ATTCGACGGACTTGATTTGGATTGGGAATACCCCGGACACAGAGGAAGTC
CACcagaagataaacaaagattCACAGAATTCTGCCAAATCCTCAAAGCA
GAATATTCATCAAGAGGACTTCTCCTTACAGCCGCTGTTGCTGCTGGTCC
CTCAACCGTCCAAGGGGCGTATGAAATATTACCAATCTCTAAGGAGTTGG
ATTTCATCAACTTAATGGCTTATGATTTGTATGGAAGCTGGGGACCTTCG
ACTGGCCACCACACCAATATGAATTCAAACAGCCCACTCAATGTAATTAG
CTCCGTCGAAATATGGCTCGCCTCAGGTATGGACCCTGATAAATTAGTCC
TGGGACTGGCACCATACGGCCGAACTTTTACTCTATCAGACAAATGCAAC
AATGGCGTTGGAGCACCTTTTATTGCACCTGGCACACCAGGACCGTACAC
AGGTGAAGCTGGCTTCAAAGCGTATTACGAAATTTGTAACAGCGCCTGGA
CCAGTAAAGTTTGCACTGGGAATAGCGAGGCTCGAGCACCACACGGAGTA
GCGAATGGCGTTTGGGTTGGTTTTGATGATGAAGAAAGCGTCGTGTACAA
AGTCAACAATATTGTGAAAGACATGGGTTTAGGAGGAATCATGTTTTGGG
CGCTTGATTTGGATGATTTTACTGGATCATGTGGAGGTGAGAAATATCCA
ATCATAAAGGCAGCAAATCGCGCTTTATTGGAAGAAAATGCACCAGTCTT
TTCATCATGTCAAGATTTTTCCGATTGCGGAGGAATCAAACCTACAACAA
CATCAACAACGACAAAGTCTACAGTTCGCCCACCAGTTTCTACCTCCACT
ACGACGACTTCCCTTCCTTCAGGAGGTTGCCAAATGCCTCCAGTAAGTGA
ACGAAAAGAATGCTGGCTCAACAAAGACGGTCCTTGGGGAAAACAACCAT
CTATTGAACAATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAAT
AAACAAATGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTAC
AACCACAACGACTATaccgacaacaacaacaacttcaCCGCTTATTTCtc
caacaacaacgaccacaaCTCAGTCCACAACGAAATCAACCACCCAAAGC
ACTACACGAAGCTCCACTACCAAATCAACAACACAGAGCActtcaacaac
aaaagaaacaccAAAACCGACCCTTCCACCACCAACCTCAAGCACGACAA
CCACACAACCTTTAGGAGGTTGTCAAATGCCTCCTGTAAGCGACCGAAAA
GAATGCTGGCTCAACAAAGAAGGCCCATGGGGAAATAACCCAGCTATCGG
ACCATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAATGAACAAA
TGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTACAACGACG
ACGACGACAATTTCCCCTACAACAACCTCCAGCACGACCAAGTCATCTAC
GAAACCAACGACACAACGTACAACAACTATCACTCAACCAACAGAGAGCT
CTACAACAACCACTCAGCAGCCTCCCAACACATGTTTCCTTCCAGCCTAC
GGGAAACGTAAAAACTGCAAATCTAACCCAAATGGTATTCTTGCAGAATT
CAAAGAAATTGATCAATTTTGTCGCGCTGGTTGTGAGACCGACCCCAAGT
GCTGTGAAGAACTTTGTTGCTGTGAGGAAAAAGATATGACAACAGACAGC
ACAACAACCACGACCAAaccaacgactactacaacACAACCGACAAGCAC
CACGACAACAACAACCATGACCaaaccaacaactactacaactaaatcaa
ccacaacaacaacaactgaGCAGCCATCAGGAGAATGTGAGATGCCAGAA
CTCTTAGATCGAACTGAATGTTGGTTGAATGAGGATGGTCCGTTTAAATC
GAGTGTTGGAATGCACAAATGGTGTATGAACACTTGTGTTGTTGATCCTT
CTTGTACGACCCTCTACTGCTGTTGTCAGTGAAAATAAAGACACAAAACT
TTGAACCATAAAATATGGACAATAAAGACAGTCTTCAAATAGGTCATATC
ATTTATGATTCTCATAAACTTAGCTCAAATTTTATGGTTATCCTGTAAAT
AAACGAAATATTATACAATTGTGAATTACAGCTTTTGGTGTTAGAGGCAT
CTAATGTATATCGAAAAATTTACTATTTGAACAGTATTCATTTATTTGGG
aaattttaataactttttacctTTATTATATTGCGAAAGAAACTTTATGA
TATTATATCTATACCTCATGTTAATCGCCGAAACATCCCTTAATTCCAAA
TGAAGATTTGACAAAGATATAGAGGTTTTTCAAGTTTACTAAGTTACGTA
AATTAAGCCATCAAAGCAAACGTTCAATTTGCATAAGTA
Run BLAST on NCBI

protein sequence of TCONS_00050460-protein

>TCONS_00050460-protein ID=TCONS_00050460-protein|Name=TCONS_00050460-protein|organism=Clytia hemisphaerica|type=polypeptide|length=814bp
MKVSILVCFTAIIWISLVRAQASDRRVCYYTNWAQYRNGIGKYFPSDYET
GLCTHIIYAFANVLEDTDGFYLHPYEWNDLQLGYPGVNSLKHNDPQLKTL
LAIGGWNFGSETFSKLVSDIDDMMVFAIRSADYLQLHEFDGLDLDWEYPG
HRGSPPEDKQRFTEFCQILKAEYSSRGLLLTAAVAAGPSTVQGAYEILPI
SKELDFINLMAYDLYGSWGPSTGHHTNMNSNSPLNVISSVEIWLASGMDP
DKLVLGLAPYGRTFTLSDKCNNGVGAPFIAPGTPGPYTGEAGFKAYYEIC
NSAWTSKVCTGNSEARAPHGVANGVWVGFDDEESVVYKVNNIVKDMGLGG
IMFWALDLDDFTGSCGGEKYPIIKAANRALLEENAPVFSSCQDFSDCGGI
KPTTTSTTTKSTVRPPVSTSTTTTSLPSGGCQMPPVSERKECWLNKDGPW
GKQPSIEQWCATSCKTDPSCNKQMCCCKGSTTPTTTTTTTTTIPTTTTTS
PLISPTTTTTTQSTTKSTTQSTTRSSTTKSTTQSTSTTKETPKPTLPPPT
SSTTTTQPLGGCQMPPVSDRKECWLNKEGPWGNNPAIGPWCATSCKTDPS
CNEQMCCCKGSTTPTTTTTTTTTTISPTTTSSTTKSSTKPTTQRTTTITQ
PTESSTTTTQQPPNTCFLPAYGKRKNCKSNPNGILAEFKEIDQFCRAGCE
TDPKCCEELCCCEEKDMTTDSTTTTTKPTTTTTQPTSTTTTTTMTKPTTT
TTKSTTTTTTEQPSGECEMPELLDRTECWLNEDGPFKSSVGMHKWCMNTC
VVDPSCTTLYCCCQ
Run BLAST on NCBI

transcript from alignment at scaffold_172:14763..18558-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050460 ID=TCONS_00050460|Name=TCONS_00050460|organism=Clytia hemisphaerica|type=transcript|length=3796bp|location=Sequence derived from alignment at scaffold_172:14763..18558- (Clytia hemisphaerica)
ATTACAAACTTCTGGGTGGAAAAAACTTCTTGACAATAAATGCATGATGG GGAGGTGTTCTTTATACCCATGTAGCACCCCAGTGAGTTCTCTTTCATAT TTCCTAGATGTAGTTTTAACAAAGTCCTTCCAATAATCAAACTAAACAAT GGATACAAGAAGAAAGCATTGACATCAACAGATCAAACGAGGAACTTTTG AAAAACCCCATGCCAAGGTCAATGGACAAATACGAGAACCCAACCAAGTT GGTTTTGCATGATAATAAACAGCTCCTTTGAAAGGCTAAGCTTCTCCTGT AGGAACTTAATTATCCTTCAATACAAACACAAGACACCCACTAACGTACG TACGTGCCTCTATGGACATCTACGATGAAACTCTACGAAGGAGGGAGTAA TTTGTGTTTATGTGTGGCAATATGGTGAATGAAACACTCCTTCGTAGTGC TGTTCAGATTAGATATAAAGTGGGTTGACTGGGTTTACAAGGAAGGATAA ACATAAGGCCAGAACAGAGATACAACGGTGATTTAAGATGAAGGTCTCAA TCTTGGTCTGTTTTACAGCAATAATATGGATCAGTCTTGTACGTGCGCAA GCCTCCGATAGACGGGTTTGTTACTACACCAACTGGGCTCAATATCGGAA TGGAATAGGAAAATACTTTCCATCGGATTATGAAACCGGTTTATGTACAC ACATTATTTACGCATTTGCGAATGTTCTGGAAGATACAGATGGTTTTTAT TTGCATCCTTATGAGTGGAACGATCTGCAGCTAGGCTATCCAGGGGTAAG TACAGTTTTTTTTCTAAAATCAATCGGTTGGAGACGAACAAATCCAGAAA AAATTATGATAGCTTCAACAATGCATTATGATCTATAACAACTTAATATT TCTCTCAAACGCATCCAGGTCAACAGTTTGAAGCATAACGATCCACAATT AAAAACGTTATTGGCGATCGGAGGTTGGAACTTTGGATCAGAAACGTTCT CAAAATTGGTGTCCGACATTGATGACATGATGGTATTCGCCATTCGCTCC GCTGACTACTTGCAGTTGCATGGTGAGTTTCTCTCACGTTCGCGCGATGA TTTCGCGCAGTAGACCACAACGCTGACGTTTTCAATCGAGGTCTATGTGC ATGGGTGGTTAGCCTGGGTTAGCCACTCTGATGATAATAGTTGAACGGAG TTTCAACATTATGCATCTTGTCGTCGTGCGTTATTTGGATACAGTCTAAA CATCTCGGGTTCACAACTAAGTACTTGCCACGTATCTACCAGAGACTTAG TTAACTTCATGAATTGAATACATACAACAGTGTAACTGATAGTTTCTTTT CTTTAGAATTCGACGGACTTGATTTGGATTGGGAATACCCCGGACACAGA GGAAGTCCACCAGAAGATAAACAAAGATTCACAGAATTCTGCCAAATCCT CAAAGCAGAATATTCATCAAGAGGACTTCTCCTTACAGCCGCTGTTGCTG CTGGTCCCTCAACCGTCCAAGGGGCGTATGAAATATTACCAATCTCTAAG GAGTTGGATTTCATCAACTTAATGGCTTATGATTTGTATGGAAGCTGGGG ACCTTCGACTGGCCACCACACCAATATGAATTCAAACAGCCCACTCAATG TAATTAGCTCCGTCGAAATATGGCTCGCCTCAGGTATGGACCCTGATAAA TTAGTCCTGGGACTGGCACCATACGGCCGAACTTTTACTCTATCAGACAA ATGCAACAATGGCGTTGGAGCACCTTTTATTGCACCTGGCACACCAGGAC CGTACACAGGTGAAGCTGGCTTCAAAGCGTATTACGAAATTTGTAACAGC GCCTGGACCAGTAAAGTTTGCACTGGGAATAGCGAGGCTCGAGCACCACA CGGAGTAGCGAATGGCGTTTGGGTTGGTTTTGATGATGAAGAAAGCGTCG TGTACAAAGTCAACAATATTGTGAAAGACATGGGTTTAGGAGGAATCATG TTTTGGGCGCTTGATTTGGATGATTTTACTGGATCATGTGGAGGTGAGAA ATATCCAATCATAAAGGCAGCAAATCGCGCTTTATTGGAAGAAAATGCAC CAGTCTTTTCATCATGTCAAGATTTTTCCGATTGCGGAGGAATCAAACCT ACAACAACATCAACAACGACAAAGTCTACAGTTCGCCCACCAGTTTCTAC CTCCACTACGACGACTTCCCTTCCTTCAGGAGGTTGCCAAATGCCTCCAG TAAGTGAACGAAAAGAATGCTGGCTCAACAAAGACGGTCCTTGGGGAAAA CAACCATCTATTGAACAATGGTGTGCCACGAGTTGTAAAACCGACCCGAG TTGCAATAAACAAATGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAA CTACTACAACCACAACGACTATACCGACAACAACAACAACTTCACCGCTT ATTTCTCCAACAACAACGACCACAACTCAGTCCACAACGAAATCAACCAC CCAAAGCACTACACGAAGCTCCACTACCAAATCAACAACACAGAGCACTT CAACAACAAAAGAAACACCAAAACCGACCCTTCCACCACCAACCTCAAGC ACGACAACCACACAACCTTTAGGAGGTTGTCAAATGCCTCCTGTAAGCGA CCGAAAAGAATGCTGGCTCAACAAAGAAGGCCCATGGGGAAATAACCCAG CTATCGGACCATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAAT GAACAAATGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTAC AACGACGACGACGACAATTTCCCCTACAACAACCTCCAGCACGACCAAGT CATCTACGAAACCAACGACACAACGTACAACAACTATCACTCAACCAACA GAGAGCTCTACAACAACCACTCAGCAGCCTCCCAACACATGTTTCCTTCC AGCCTACGGGAAACGTAAAAACTGCAAATCTAACCCAAATGGTATTCTTG CAGAATTCAAAGAAATTGATCAATTTTGTCGCGCTGGTTGTGAGACCGAC CCCAAGTGCTGTGAAGAACTTTGTTGCTGTGAGGAAAAAGATATGACAAC AGACAGCACAACAACCACGACCAAACCAACGACTACTACAACACAACCGA CAAGCACCACGACAACAACAACCATGACCAAACCAACAACTACTACAACT AAATCAACCACAACAACAACAACTGAGCAGCCATCAGGAGAATGTGAGAT GCCAGAACTCTTAGATCGAACTGAATGTTGGTTGAATGAGGATGGTCCGT TTAAATCGAGTGTTGGAATGCACAAATGGTGTATGAACACTTGTGTTGTT GATCCTTCTTGTACGACCCTCTACTGCTGTTGTCAGTGAAAATAAAGACA CAAAACTTTGAACCATAAAATATGGACAATAAAGACAGTCTTCAAATAGG TCATATCATTTATGATTCTCATAAACTTAGCTCAAATTTTATGGTTATCC TGTAAATAAACGAAATATTATACAATTGTGAATTACAGCTTTTGGTGTTA GAGGCATCTAATGTATATCGAAAAATTTACTATTTGAACAGTATTCATTT ATTTGGGAAATTTTAATAACTTTTTACCTTTATTATATTGCGAAAGAAAC TTTATGATATTATATCTATACCTCATGTTAATCGCCGAAACATCCCTTAA TTCCAAATGAAGATTTGACAAAGATATAGAGGTTTTTCAAGTTTACTAAG TTACGTAAATTAAGCCATCAAAGCAAACGTTCAATTTGCATAAGTA

Coding sequence (CDS) from alignment at scaffold_172:14763..18558-

>TCONS_00050460 ID=TCONS_00050460|Name=TCONS_00050460|organism=Clytia hemisphaerica|type=CDS|length=7335bp|location=Sequence derived from alignment at scaffold_172:14763..18558- (Clytia hemisphaerica)
AATTCGACGGACTTGATTTGGATTGGGAATACCCCGGACACAGAGGAAGT
CCACCAGAAGATAAACAAAGATTCACAGAATTCTGCCAAATCCTCAAAGC
AGAATATTCATCAAGAGGACTTCTCCTTACAGCCGCTGTTGCTGCTGGTC
CCTCAACCGTCCAAGGGGCGTATGAAATATTACCAATCTCTAAGGAGTTG
GATTTCATCAACTTAATGGCTTATGATTTGTATGGAAGCTGGGGACCTTC
GACTGGCCACCACACCAATATGAATTCAAACAGCCCACTCAATGTAATTA
GCTCCGTCGAAATATGGCTCGCCTCAGGTATGGACCCTGATAAATTAGTC
CTGGGACTGGCACCATACGGCCGAACTTTTACTCTATCAGACAAATGCAA
CAATGGCGTTGGAGCACCTTTTATTGCACCTGGCACACCAGGACCGTACA
CAGGTGAAGCTGGCTTCAAAGCGTATTACGAAATTTGTAACAGCGCCTGG
ACCAGTAAAGTTTGCACTGGGAATAGCGAGGCTCGAGCACCACACGGAGT
AGCGAATGGCGTTTGGGTTGGTTTTGATGATGAAGAAAGCGTCGTGTACA
AAGTCAACAATATTGTGAAAGACATGGGTTTAGGAGGAATCATGTTTTGG
GCGCTTGATTTGGATGATTTTACTGGATCATGTGGAGGTGAGAAATATCC
AATCATAAAGGCAGCAAATCGCGCTTTATTGGAAGAAAATGCACCAGTCT
TTTCATCATGTCAAGATTTTTCCGATTGCGGAGGAATCAAACCTACAACA
ACATCAACAACGACAAAGTCTACAGTTCGCCCACCAGTTTCTACCTCCAC
TACGACGACTTCCCTTCCTTCAGGAGGTTGCCAAATGCCTCCAGTAAGTG
AACGAAAAGAATGCTGGCTCAACAAAGACGGTCCTTGGGGAAAACAACCA
TCTATTGAACAATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAA
TAAACAAATGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTA
CAACCACAACGACTATACCGACAACAACAACAACTTCACCGCTTATTTCT
CCAACAACAACGACCACAACTCAGTCCACAACGAAATCAACCACCCAAAG
CACTACACGAAGCTCCACTACCAAATCAACAACACAGAGCACTTCAACAA
CAAAAGAAACACCAAAACCGACCCTTCCACCACCAACCTCAAGCACGACA
ACCACACAACCTTTAGGAGGTTGTCAAATGCCTCCTGTAAGCGACCGAAA
AGAATGCTGGCTCAACAAAGAAGGCCCATGGGGAAATAACCCAGCTATCG
GACCATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAATGAACAA
ATGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTACAACGAC
GACGACGACAATTTCCCCTACAACAACCTCCAGCACGACCAAGTCATCTA
CGAAACCAACGACACAACGTACAACAACTATCACTCAACCAACAGAGAGC
TCTACAACAACCACTCAGCAGCCTCCCAACACATGTTTCCTTCCAGCCTA
CGGGAAACGTAAAAACTGCAAATCTAACCCAAATGGTATTCTTGCAGAAT
TCAAAGAAATTGATCAATTTTGTCGCGCTGGTTGTGAGACCGACCCCAAG
TGCTGTGAAGAACTTTGTTGCTGTGAGGAAAAAGATATGACAACAGACAG
CACAACAACCACGACCAAACCAACGACTACTACAACACAACCGACAAGCA
CCACGACAACAACAACCATGACCAAACCAACAACTACTACAACTAAATCA
ACCACAACAACAACAACTGAGCAGCCATCAGGAGAATGTGAGATGCCAGA
ACTCTTAGATCGAACTGAATGTTGGTTGAATGAGGATGGTCCGTTTAAAT
CGAGTGTTGGAATGCACAAATGGTGTATGAACACTTGTGTTGTTGATCCT
TCTTGTACGACCCTCTACTGCTGTTGTCAGTGAGTCAACAGTTTGAAGCA
TAACGATCCACAATTAAAAACGTTATTGGCGATCGGAGGTTGGAACTTTG
GATCAGAAACGTTCTCAAAATTGGTGTCCGACATTGATGACATGATGGTA
TTCGCCATTCGCTCCGCTGACTACTTGCAGTTGCATGATGAAGGTCTCAA
TCTTGGTCTGTTTTACAGCAATAATATGGATCAGTCTTGTACGTGCGCAA
GCCTCCGATAGACGGGTTTGTTACTACACCAACTGGGCTCAATATCGGAA
TGGAATAGGAAAATACTTTCCATCGGATTATGAAACCGGTTTATGTACAC
ACATTATTTACGCATTTGCGAATGTTCTGGAAGATACAGATGGTTTTTAT
TTGCATCCTTATGAGTGGAACGATCTGCAGCTAGGCTATCCAGGGAATTC
GACGGACTTGATTTGGATTGGGAATACCCCGGACACAGAGGAAGTCCACC
AGAAGATAAACAAAGATTCACAGAATTCTGCCAAATCCTCAAAGCAGAAT
ATTCATCAAGAGGACTTCTCCTTACAGCCGCTGTTGCTGCTGGTCCCTCA
ACCGTCCAAGGGGCGTATGAAATATTACCAATCTCTAAGGAGTTGGATTT
CATCAACTTAATGGCTTATGATTTGTATGGAAGCTGGGGACCTTCGACTG
GCCACCACACCAATATGAATTCAAACAGCCCACTCAATGTAATTAGCTCC
GTCGAAATATGGCTCGCCTCAGGTATGGACCCTGATAAATTAGTCCTGGG
ACTGGCACCATACGGCCGAACTTTTACTCTATCAGACAAATGCAACAATG
GCGTTGGAGCACCTTTTATTGCACCTGGCACACCAGGACCGTACACAGGT
GAAGCTGGCTTCAAAGCGTATTACGAAATTTGTAACAGCGCCTGGACCAG
TAAAGTTTGCACTGGGAATAGCGAGGCTCGAGCACCACACGGAGTAGCGA
ATGGCGTTTGGGTTGGTTTTGATGATGAAGAAAGCGTCGTGTACAAAGTC
AACAATATTGTGAAAGACATGGGTTTAGGAGGAATCATGTTTTGGGCGCT
TGATTTGGATGATTTTACTGGATCATGTGGAGGTGAGAAATATCCAATCA
TAAAGGCAGCAAATCGCGCTTTATTGGAAGAAAATGCACCAGTCTTTTCA
TCATGTCAAGATTTTTCCGATTGCGGAGGAATCAAACCTACAACAACATC
AACAACGACAAAGTCTACAGTTCGCCCACCAGTTTCTACCTCCACTACGA
CGACTTCCCTTCCTTCAGGAGGTTGCCAAATGCCTCCAGTAAGTGAACGA
AAAGAATGCTGGCTCAACAAAGACGGTCCTTGGGGAAAACAACCATCTAT
TGAACAATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAATAAAC
AAATGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTACAACC
ACAACGACTATACCGACAACAACAACAACTTCACCGCTTATTTCTCCAAC
AACAACGACCACAACTCAGTCCACAACGAAATCAACCACCCAAAGCACTA
CACGAAGCTCCACTACCAAATCAACAACACAGAGCACTTCAACAACAAAA
GAAACACCAAAACCGACCCTTCCACCACCAACCTCAAGCACGACAACCAC
ACAACCTTTAGGAGGTTGTCAAATGCCTCCTGTAAGCGACCGAAAAGAAT
GCTGGCTCAACAAAGAAGGCCCATGGGGAAATAACCCAGCTATCGGACCA
TGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAATGAACAAATGTG
TTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTACAACGACGACGA
CGACAATTTCCCCTACAACAACCTCCAGCACGACCAAGTCATCTACGAAA
CCAACGACACAACGTACAACAACTATCACTCAACCAACAGAGAGCTCTAC
AACAACCACTCAGCAGCCTCCCAACACATGTTTCCTTCCAGCCTACGGGA
AACGTAAAAACTGCAAATCTAACCCAAATGGTATTCTTGCAGAATTCAAA
GAAATTGATCAATTTTGTCGCGCTGGTTGTGAGACCGACCCCAAGTGCTG
TGAAGAACTTTGTTGCTGTGAGGAAAAAGATATGACAACAGACAGCACAA
CAACCACGACCAAACCAACGACTACTACAACACAACCGACAAGCACCACG
ACAACAACAACCATGACCAAACCAACAACTACTACAACTAAATCAACCAC
AACAACAACAACTGAGCAGCCATCAGGAGAATGTGAGATGCCAGAACTCT
TAGATCGAACTGAATGTTGGTTGAATGAGGATGGTCCGTTTAAATCGAGT
GTTGGAATGCACAAATGGTGTATGAACACTTGTGTTGTTGATCCTTCTTG
TACGACCCTCTACTGCTGTTGTCAGTGAGTCAACAGTTTGAAGCATAACG
ATCCACAATTAAAAACGTTATTGGCGATCGGAGGTTGGAACTTTGGATCA
GAAACGTTCTCAAAATTGGTGTCCGACATTGATGACATGATGGTATTCGC
CATTCGCTCCGCTGACTACTTGCAGTTGCATGATGAAGGTCTCAATCTTG
GTCTGTTTTACAGCAATAATATGGATCAGTCTTGTACGTGCGCAAGCCTC
CGATAGACGGGTTTGTTACTACACCAACTGGGCTCAATATCGGAATGGAA
TAGGAAAATACTTTCCATCGGATTATGAAACCGGTTTATGTACACACATT
ATTTACGCATTTGCGAATGTTCTGGAAGATACAGATGGTTTTTATTTGCA
TCCTTATGAGTGGAACGATCTGCAGCTAGGCTATCCAGGGAATTCGACGG
ACTTGATTTGGATTGGGAATACCCCGGACACAGAGGAAGTCCACCAGAAG
ATAAACAAAGATTCACAGAATTCTGCCAAATCCTCAAAGCAGAATATTCA
TCAAGAGGACTTCTCCTTACAGCCGCTGTTGCTGCTGGTCCCTCAACCGT
CCAAGGGGCGTATGAAATATTACCAATCTCTAAGGAGTTGGATTTCATCA
ACTTAATGGCTTATGATTTGTATGGAAGCTGGGGACCTTCGACTGGCCAC
CACACCAATATGAATTCAAACAGCCCACTCAATGTAATTAGCTCCGTCGA
AATATGGCTCGCCTCAGGTATGGACCCTGATAAATTAGTCCTGGGACTGG
CACCATACGGCCGAACTTTTACTCTATCAGACAAATGCAACAATGGCGTT
GGAGCACCTTTTATTGCACCTGGCACACCAGGACCGTACACAGGTGAAGC
TGGCTTCAAAGCGTATTACGAAATTTGTAACAGCGCCTGGACCAGTAAAG
TTTGCACTGGGAATAGCGAGGCTCGAGCACCACACGGAGTAGCGAATGGC
GTTTGGGTTGGTTTTGATGATGAAGAAAGCGTCGTGTACAAAGTCAACAA
TATTGTGAAAGACATGGGTTTAGGAGGAATCATGTTTTGGGCGCTTGATT
TGGATGATTTTACTGGATCATGTGGAGGTGAGAAATATCCAATCATAAAG
GCAGCAAATCGCGCTTTATTGGAAGAAAATGCACCAGTCTTTTCATCATG
TCAAGATTTTTCCGATTGCGGAGGAATCAAACCTACAACAACATCAACAA
CGACAAAGTCTACAGTTCGCCCACCAGTTTCTACCTCCACTACGACGACT
TCCCTTCCTTCAGGAGGTTGCCAAATGCCTCCAGTAAGTGAACGAAAAGA
ATGCTGGCTCAACAAAGACGGTCCTTGGGGAAAACAACCATCTATTGAAC
AATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAATAAACAAATG
TGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTACAACCACAAC
GACTATACCGACAACAACAACAACTTCACCGCTTATTTCTCCAACAACAA
CGACCACAACTCAGTCCACAACGAAATCAACCACCCAAAGCACTACACGA
AGCTCCACTACCAAATCAACAACACAGAGCACTTCAACAACAAAAGAAAC
ACCAAAACCGACCCTTCCACCACCAACCTCAAGCACGACAACCACACAAC
CTTTAGGAGGTTGTCAAATGCCTCCTGTAAGCGACCGAAAAGAATGCTGG
CTCAACAAAGAAGGCCCATGGGGAAATAACCCAGCTATCGGACCATGGTG
TGCCACGAGTTGTAAAACCGACCCGAGTTGCAATGAACAAATGTGTTGCT
GTAAAGGTTCAACGACTCCCACAACAACTACTACAACGACGACGACGACA
ATTTCCCCTACAACAACCTCCAGCACGACCAAGTCATCTACGAAACCAAC
GACACAACGTACAACAACTATCACTCAACCAACAGAGAGCTCTACAACAA
CCACTCAGCAGCCTCCCAACACATGTTTCCTTCCAGCCTACGGGAAACGT
AAAAACTGCAAATCTAACCCAAATGGTATTCTTGCAGAATTCAAAGAAAT
TGATCAATTTTGTCGCGCTGGTTGTGAGACCGACCCCAAGTGCTGTGAAG
AACTTTGTTGCTGTGAGGAAAAAGATATGACAACAGACAGCACAACAACC
ACGACCAAACCAACGACTACTACAACACAACCGACAAGCACCACGACAAC
AACAACCATGACCAAACCAACAACTACTACAACTAAATCAACCACAACAA
CAACAACTGAGCAGCCATCAGGAGAATGTGAGATGCCAGAACTCTTAGAT
CGAACTGAATGTTGGTTGAATGAGGATGGTCCGTTTAAATCGAGTGTTGG
AATGCACAAATGGTGTATGAACACTTGTGTTGTTGATCCTTCTTGTACGA
CCCTCTACTGCTGTTGTCAGTGAGTCAACAGTTTGAAGCATAACGATCCA
CAATTAAAAACGTTATTGGCGATCGGAGGTTGGAACTTTGGATCAGAAAC
GTTCTCAAAATTGGTGTCCGACATTGATGACATGATGGTATTCGCCATTC
GCTCCGCTGACTACTTGCAGTTGCATGATGAAGGTCTCAATCTTGGTCTG
TTTTACAGCAATAATATGGATCAGTCTTGTACGTGCGCAAGCCTCCGATA
GACGGGTTTGTTACTACACCAACTGGGCTCAATATCGGAATGGAATAGGA
AAATACTTTCCATCGGATTATGAAACCGGTTTATGTACACACATTATTTA
CGCATTTGCGAATGTTCTGGAAGATACAGATGGTTTTTATTTGCATCCTT
ATGAGTGGAACGATCTGCAGCTAGGCTATCCAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031955XLOC_031955Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050460-proteinTCONS_00050460-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050460-exon-scaffold_172-1575043694:17764..18558TCONS_00050460-exon-scaffold_172-1575043694:17764..18558Clytia hemisphaericaexon
TCONS_00050460-exon-scaffold_172-1575043694:17487..17640TCONS_00050460-exon-scaffold_172-1575043694:17487..17640Clytia hemisphaericaexon
TCONS_00050460-exon-scaffold_172-1575043694:14763..17202TCONS_00050460-exon-scaffold_172-1575043694:14763..17202Clytia hemisphaericaexon
TCONS_00050460-exon-scaffold_172-1510915933:17764..18558TCONS_00050460-exon-scaffold_172-1510915933:17764..18558Clytia hemisphaericaexon
TCONS_00050460-exon-scaffold_172-1510915933:17487..17640TCONS_00050460-exon-scaffold_172-1510915933:17487..17640Clytia hemisphaericaexon
TCONS_00050460-exon-scaffold_172-1510915933:14763..17202TCONS_00050460-exon-scaffold_172-1510915933:14763..17202Clytia hemisphaericaexon
TCONS_00050460-exon-scaffold_172-1491911889:17764..18558TCONS_00050460-exon-scaffold_172-1491911889:17764..18558Clytia hemisphaericaexon
TCONS_00050460-exon-scaffold_172-1491911889:17487..17640TCONS_00050460-exon-scaffold_172-1491911889:17487..17640Clytia hemisphaericaexon
TCONS_00050460-exon-scaffold_172-1491911889:14763..17202TCONS_00050460-exon-scaffold_172-1491911889:14763..17202Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_172supercontigscaffold_172:14763..18558 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.022313 0.0217587 0.012632 0.0123584 0.0902712 0.107 0.215152 0 0.0527007 0.1258 0.000464677 0 0.484874 1.16354 4.20568e-07 0 0 0 0.137639 1.11002e-08 0 3.35059e-06 0.0383755 0 0 0.106903 0.0275791 0 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011583Chitinase_II
IPR001223Glyco_hydro18_cat
IPR001579Glyco_hydro_18_chit_AS
IPR017853Glycoside_hydrolase_SF
IPR029070Chitinase_insertion
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0008061 chitin binding
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
Blast
BLAST of TCONS_00050460 vs. Swiss-Prot (Human)
Match: CHIT1 (Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 3.548e-96
Identity = 167/389 (42.93%), Postives = 230/389 (59.13%), Query Frame = 1
Query:  556 VCFTAIIWISLVRAQASDRRVCYYTNWAQYRNGIGKYFPSDYETGLCTHIIYAFANVLEDTDGFYLHPYEWNDLQLGYPGVNSLKHNDPQLKTLLAIGGWNFGSETFSKLVSDIDDMMVFAIRSADYLQLHEFDGLDLDWEYPGHRGSPPEDKQRFTEFCQILKAEYSSRG-------LLLTAAVAAGPSTVQGAYEILPISKELDFINLMAYDLYGSWGPSTGHHTNM-------NSNSPLNVISSVEIWLASGMDPDKLVLGLAPYGRTFTLSDKCNNGVGAPFIAPGTPGPYTGEAGFKAYYEICNSAWTSKVCTGNSEARAPHGVANGVWVGFDDEESVVYKVNNIVKDMGLGGIMFWALDLDDFTG-SCGGEKYPIIKAANRAL 1677
            V +   + + ++   ++ + VCY+TNWAQYR G  ++ P D +  LCTH+IYAFA +        L   EWND  L Y   N LK  +P+LKTLLAIGGWNFG++ F+ +V+  ++   F   +  +L+ + FDGLDLDWEYPG +GSP  DK+RFT   Q L   +           LLL+AAV AG + V   YE+  I++ LDF+NLMAYD +GSW   TGH++ +        + + LNV ++V+ WL  G    KL+LG+  YGR+FTL+   +  VGAP    GTPGP+T E G  AYYE+C  +W         + + P+   +  WVGFDD ES   KV + +K  GLGG M WALDLDDF G SC   +YP+I+   + L
Sbjct:    5 VAWAGFMVLLMIPWGSAAKLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQ----LSTTEWNDETL-YQEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVC--SWKGATKQRIQDQKVPYIFRDNQWVGFDDVESFKTKV-SYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQEL 385          
The following BLAST results are available for this feature:
BLAST of TCONS_00050460 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHIT13.548e-9642.93Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV... [more]
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