TCONS_00050460 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00050460
Unique Name	TCONS_00050460
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3389

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_172:14763..18558-
coding sequence from alignment at scaffold_172:14763..18558-

transcript sequence

>TCONS_00050460 ID=TCONS_00050460|Name=TCONS_00050460|organism=Clytia hemisphaerica|type=transcript|length=3389bp
ATTACAAACTTCTGGGTGGAAAAAACTTCTTGACAATAAATGCATGATGG
GGAGGTGTTCTTTATACCCATGTAGCACCCCAGTGAGTTCTCTTTCATAT
TTCCTAGATGTAGTTTTAACAAAGTCCTTCCAATAATCAAACTAAACAAT
GGATACAAGAAGAAAGCATTGACATCAACAGATCAAACGAGGAACTTTTG
AAAAACCCCATGCCAAGGTCAATGGACAAATACGAGAACCCAACCAAGTT
GGTTTTGCATGATAATAAACAGCTCCTTTGAAAGGCTAAGCTTCTCCTGT
AGGAACTTAATTATCCTTCAATACAAACACAAGACACCCACTAACGTACG
TACGTGCCTCTATGGACATCTACGATGAAACTCTACGAAGGAGGGAGTAA
TTTGTGTTTATGTGTGGCAATATGGTGAATGAAACACTCCTTCGTAGTGC
TGTTCAGATTAGATATAAAGTGGGTTGACTGGGTTTACAAGGAAGGATAA
ACATAAGGCCAGAACAGAGATACAACGGTGATTTAAGATGAAGGTCTCAA
TCTTGGTCTGTTTTACAGCAATAATATGGATCAGTCTTGTACGTGCGCAA
GCCTCCGATAGACGGGTTTGTTACTACACCAACTGGGCTCAATATCGGAA
TGGAATAGGAAAATACTTTCCATCGGATTATGAAACCGGTTTATGTACAC
ACATTATTTACGCATTTGCGAATGTTCTGGAAGATACAGATGGTTTTTAT
TTGCATCCTTATGAGTGGAACGATCTGCAGCTAGGCTATCCAGGGGTCAA
CAGTTTGAAGCATAACGATCCACAATTAAAAACGTTATTGGCGATCGGAG
GTTGGAACTTTGGATCAGAAACGTTCTCAAAATTGGTGTCCGACATTGAT
GACATGATGGTATTCGCCATTCGCTCCGCTGACTACTTGCAGTTGCATGA
ATTCGACGGACTTGATTTGGATTGGGAATACCCCGGACACAGAGGAAGTC
CACcagaagataaacaaagattCACAGAATTCTGCCAAATCCTCAAAGCA
GAATATTCATCAAGAGGACTTCTCCTTACAGCCGCTGTTGCTGCTGGTCC
CTCAACCGTCCAAGGGGCGTATGAAATATTACCAATCTCTAAGGAGTTGG
ATTTCATCAACTTAATGGCTTATGATTTGTATGGAAGCTGGGGACCTTCG
ACTGGCCACCACACCAATATGAATTCAAACAGCCCACTCAATGTAATTAG
CTCCGTCGAAATATGGCTCGCCTCAGGTATGGACCCTGATAAATTAGTCC
TGGGACTGGCACCATACGGCCGAACTTTTACTCTATCAGACAAATGCAAC
AATGGCGTTGGAGCACCTTTTATTGCACCTGGCACACCAGGACCGTACAC
AGGTGAAGCTGGCTTCAAAGCGTATTACGAAATTTGTAACAGCGCCTGGA
CCAGTAAAGTTTGCACTGGGAATAGCGAGGCTCGAGCACCACACGGAGTA
GCGAATGGCGTTTGGGTTGGTTTTGATGATGAAGAAAGCGTCGTGTACAA
AGTCAACAATATTGTGAAAGACATGGGTTTAGGAGGAATCATGTTTTGGG
CGCTTGATTTGGATGATTTTACTGGATCATGTGGAGGTGAGAAATATCCA
ATCATAAAGGCAGCAAATCGCGCTTTATTGGAAGAAAATGCACCAGTCTT
TTCATCATGTCAAGATTTTTCCGATTGCGGAGGAATCAAACCTACAACAA
CATCAACAACGACAAAGTCTACAGTTCGCCCACCAGTTTCTACCTCCACT
ACGACGACTTCCCTTCCTTCAGGAGGTTGCCAAATGCCTCCAGTAAGTGA
ACGAAAAGAATGCTGGCTCAACAAAGACGGTCCTTGGGGAAAACAACCAT
CTATTGAACAATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAAT
AAACAAATGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTAC
AACCACAACGACTATaccgacaacaacaacaacttcaCCGCTTATTTCtc
caacaacaacgaccacaaCTCAGTCCACAACGAAATCAACCACCCAAAGC
ACTACACGAAGCTCCACTACCAAATCAACAACACAGAGCActtcaacaac
aaaagaaacaccAAAACCGACCCTTCCACCACCAACCTCAAGCACGACAA
CCACACAACCTTTAGGAGGTTGTCAAATGCCTCCTGTAAGCGACCGAAAA
GAATGCTGGCTCAACAAAGAAGGCCCATGGGGAAATAACCCAGCTATCGG
ACCATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAATGAACAAA
TGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTACAACGACG
ACGACGACAATTTCCCCTACAACAACCTCCAGCACGACCAAGTCATCTAC
GAAACCAACGACACAACGTACAACAACTATCACTCAACCAACAGAGAGCT
CTACAACAACCACTCAGCAGCCTCCCAACACATGTTTCCTTCCAGCCTAC
GGGAAACGTAAAAACTGCAAATCTAACCCAAATGGTATTCTTGCAGAATT
CAAAGAAATTGATCAATTTTGTCGCGCTGGTTGTGAGACCGACCCCAAGT
GCTGTGAAGAACTTTGTTGCTGTGAGGAAAAAGATATGACAACAGACAGC
ACAACAACCACGACCAAaccaacgactactacaacACAACCGACAAGCAC
CACGACAACAACAACCATGACCaaaccaacaactactacaactaaatcaa
ccacaacaacaacaactgaGCAGCCATCAGGAGAATGTGAGATGCCAGAA
CTCTTAGATCGAACTGAATGTTGGTTGAATGAGGATGGTCCGTTTAAATC
GAGTGTTGGAATGCACAAATGGTGTATGAACACTTGTGTTGTTGATCCTT
CTTGTACGACCCTCTACTGCTGTTGTCAGTGAAAATAAAGACACAAAACT
TTGAACCATAAAATATGGACAATAAAGACAGTCTTCAAATAGGTCATATC
ATTTATGATTCTCATAAACTTAGCTCAAATTTTATGGTTATCCTGTAAAT
AAACGAAATATTATACAATTGTGAATTACAGCTTTTGGTGTTAGAGGCAT
CTAATGTATATCGAAAAATTTACTATTTGAACAGTATTCATTTATTTGGG
aaattttaataactttttacctTTATTATATTGCGAAAGAAACTTTATGA
TATTATATCTATACCTCATGTTAATCGCCGAAACATCCCTTAATTCCAAA
TGAAGATTTGACAAAGATATAGAGGTTTTTCAAGTTTACTAAGTTACGTA
AATTAAGCCATCAAAGCAAACGTTCAATTTGCATAAGTA

Run BLAST on NCBI

protein sequence of TCONS_00050460-protein

>TCONS_00050460-protein ID=TCONS_00050460-protein|Name=TCONS_00050460-protein|organism=Clytia hemisphaerica|type=polypeptide|length=814bp
MKVSILVCFTAIIWISLVRAQASDRRVCYYTNWAQYRNGIGKYFPSDYET
GLCTHIIYAFANVLEDTDGFYLHPYEWNDLQLGYPGVNSLKHNDPQLKTL
LAIGGWNFGSETFSKLVSDIDDMMVFAIRSADYLQLHEFDGLDLDWEYPG
HRGSPPEDKQRFTEFCQILKAEYSSRGLLLTAAVAAGPSTVQGAYEILPI
SKELDFINLMAYDLYGSWGPSTGHHTNMNSNSPLNVISSVEIWLASGMDP
DKLVLGLAPYGRTFTLSDKCNNGVGAPFIAPGTPGPYTGEAGFKAYYEIC
NSAWTSKVCTGNSEARAPHGVANGVWVGFDDEESVVYKVNNIVKDMGLGG
IMFWALDLDDFTGSCGGEKYPIIKAANRALLEENAPVFSSCQDFSDCGGI
KPTTTSTTTKSTVRPPVSTSTTTTSLPSGGCQMPPVSERKECWLNKDGPW
GKQPSIEQWCATSCKTDPSCNKQMCCCKGSTTPTTTTTTTTTIPTTTTTS
PLISPTTTTTTQSTTKSTTQSTTRSSTTKSTTQSTSTTKETPKPTLPPPT
SSTTTTQPLGGCQMPPVSDRKECWLNKEGPWGNNPAIGPWCATSCKTDPS
CNEQMCCCKGSTTPTTTTTTTTTTISPTTTSSTTKSSTKPTTQRTTTITQ
PTESSTTTTQQPPNTCFLPAYGKRKNCKSNPNGILAEFKEIDQFCRAGCE
TDPKCCEELCCCEEKDMTTDSTTTTTKPTTTTTQPTSTTTTTTMTKPTTT
TTKSTTTTTTEQPSGECEMPELLDRTECWLNEDGPFKSSVGMHKWCMNTC
VVDPSCTTLYCCCQ

Run BLAST on NCBI

transcript from alignment at scaffold_172:14763..18558-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00050460 ID=TCONS_00050460|Name=TCONS_00050460|organism=Clytia hemisphaerica|type=transcript|length=3796bp|location=Sequence derived from alignment at scaffold_172:14763..18558- (Clytia hemisphaerica)
ATTACAAACTTCTGGGTGGAAAAAACTTCTTGACAATAAATGCATGATGG
GGAGGTGTTCTTTATACCCATGTAGCACCCCAGTGAGTTCTCTTTCATAT
TTCCTAGATGTAGTTTTAACAAAGTCCTTCCAATAATCAAACTAAACAAT
GGATACAAGAAGAAAGCATTGACATCAACAGATCAAACGAGGAACTTTTG
AAAAACCCCATGCCAAGGTCAATGGACAAATACGAGAACCCAACCAAGTT
GGTTTTGCATGATAATAAACAGCTCCTTTGAAAGGCTAAGCTTCTCCTGT
AGGAACTTAATTATCCTTCAATACAAACACAAGACACCCACTAACGTACG
TACGTGCCTCTATGGACATCTACGATGAAACTCTACGAAGGAGGGAGTAA
TTTGTGTTTATGTGTGGCAATATGGTGAATGAAACACTCCTTCGTAGTGC
TGTTCAGATTAGATATAAAGTGGGTTGACTGGGTTTACAAGGAAGGATAA
ACATAAGGCCAGAACAGAGATACAACGGTGATTTAAGATGAAGGTCTCAA
TCTTGGTCTGTTTTACAGCAATAATATGGATCAGTCTTGTACGTGCGCAA
GCCTCCGATAGACGGGTTTGTTACTACACCAACTGGGCTCAATATCGGAA
TGGAATAGGAAAATACTTTCCATCGGATTATGAAACCGGTTTATGTACAC
ACATTATTTACGCATTTGCGAATGTTCTGGAAGATACAGATGGTTTTTAT
TTGCATCCTTATGAGTGGAACGATCTGCAGCTAGGCTATCCAGGGGTAAG
TACAGTTTTTTTTCTAAAATCAATCGGTTGGAGACGAACAAATCCAGAAA
AAATTATGATAGCTTCAACAATGCATTATGATCTATAACAACTTAATATT
TCTCTCAAACGCATCCAGGTCAACAGTTTGAAGCATAACGATCCACAATT
AAAAACGTTATTGGCGATCGGAGGTTGGAACTTTGGATCAGAAACGTTCT
CAAAATTGGTGTCCGACATTGATGACATGATGGTATTCGCCATTCGCTCC
GCTGACTACTTGCAGTTGCATGGTGAGTTTCTCTCACGTTCGCGCGATGA
TTTCGCGCAGTAGACCACAACGCTGACGTTTTCAATCGAGGTCTATGTGC
ATGGGTGGTTAGCCTGGGTTAGCCACTCTGATGATAATAGTTGAACGGAG
TTTCAACATTATGCATCTTGTCGTCGTGCGTTATTTGGATACAGTCTAAA
CATCTCGGGTTCACAACTAAGTACTTGCCACGTATCTACCAGAGACTTAG
TTAACTTCATGAATTGAATACATACAACAGTGTAACTGATAGTTTCTTTT
CTTTAGAATTCGACGGACTTGATTTGGATTGGGAATACCCCGGACACAGA
GGAAGTCCACCAGAAGATAAACAAAGATTCACAGAATTCTGCCAAATCCT
CAAAGCAGAATATTCATCAAGAGGACTTCTCCTTACAGCCGCTGTTGCTG
CTGGTCCCTCAACCGTCCAAGGGGCGTATGAAATATTACCAATCTCTAAG
GAGTTGGATTTCATCAACTTAATGGCTTATGATTTGTATGGAAGCTGGGG
ACCTTCGACTGGCCACCACACCAATATGAATTCAAACAGCCCACTCAATG
TAATTAGCTCCGTCGAAATATGGCTCGCCTCAGGTATGGACCCTGATAAA
TTAGTCCTGGGACTGGCACCATACGGCCGAACTTTTACTCTATCAGACAA
ATGCAACAATGGCGTTGGAGCACCTTTTATTGCACCTGGCACACCAGGAC
CGTACACAGGTGAAGCTGGCTTCAAAGCGTATTACGAAATTTGTAACAGC
GCCTGGACCAGTAAAGTTTGCACTGGGAATAGCGAGGCTCGAGCACCACA
CGGAGTAGCGAATGGCGTTTGGGTTGGTTTTGATGATGAAGAAAGCGTCG
TGTACAAAGTCAACAATATTGTGAAAGACATGGGTTTAGGAGGAATCATG
TTTTGGGCGCTTGATTTGGATGATTTTACTGGATCATGTGGAGGTGAGAA
ATATCCAATCATAAAGGCAGCAAATCGCGCTTTATTGGAAGAAAATGCAC
CAGTCTTTTCATCATGTCAAGATTTTTCCGATTGCGGAGGAATCAAACCT
ACAACAACATCAACAACGACAAAGTCTACAGTTCGCCCACCAGTTTCTAC
CTCCACTACGACGACTTCCCTTCCTTCAGGAGGTTGCCAAATGCCTCCAG
TAAGTGAACGAAAAGAATGCTGGCTCAACAAAGACGGTCCTTGGGGAAAA
CAACCATCTATTGAACAATGGTGTGCCACGAGTTGTAAAACCGACCCGAG
TTGCAATAAACAAATGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAA
CTACTACAACCACAACGACTATACCGACAACAACAACAACTTCACCGCTT
ATTTCTCCAACAACAACGACCACAACTCAGTCCACAACGAAATCAACCAC
CCAAAGCACTACACGAAGCTCCACTACCAAATCAACAACACAGAGCACTT
CAACAACAAAAGAAACACCAAAACCGACCCTTCCACCACCAACCTCAAGC
ACGACAACCACACAACCTTTAGGAGGTTGTCAAATGCCTCCTGTAAGCGA
CCGAAAAGAATGCTGGCTCAACAAAGAAGGCCCATGGGGAAATAACCCAG
CTATCGGACCATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAAT
GAACAAATGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTAC
AACGACGACGACGACAATTTCCCCTACAACAACCTCCAGCACGACCAAGT
CATCTACGAAACCAACGACACAACGTACAACAACTATCACTCAACCAACA
GAGAGCTCTACAACAACCACTCAGCAGCCTCCCAACACATGTTTCCTTCC
AGCCTACGGGAAACGTAAAAACTGCAAATCTAACCCAAATGGTATTCTTG
CAGAATTCAAAGAAATTGATCAATTTTGTCGCGCTGGTTGTGAGACCGAC
CCCAAGTGCTGTGAAGAACTTTGTTGCTGTGAGGAAAAAGATATGACAAC
AGACAGCACAACAACCACGACCAAACCAACGACTACTACAACACAACCGA
CAAGCACCACGACAACAACAACCATGACCAAACCAACAACTACTACAACT
AAATCAACCACAACAACAACAACTGAGCAGCCATCAGGAGAATGTGAGAT
GCCAGAACTCTTAGATCGAACTGAATGTTGGTTGAATGAGGATGGTCCGT
TTAAATCGAGTGTTGGAATGCACAAATGGTGTATGAACACTTGTGTTGTT
GATCCTTCTTGTACGACCCTCTACTGCTGTTGTCAGTGAAAATAAAGACA
CAAAACTTTGAACCATAAAATATGGACAATAAAGACAGTCTTCAAATAGG
TCATATCATTTATGATTCTCATAAACTTAGCTCAAATTTTATGGTTATCC
TGTAAATAAACGAAATATTATACAATTGTGAATTACAGCTTTTGGTGTTA
GAGGCATCTAATGTATATCGAAAAATTTACTATTTGAACAGTATTCATTT
ATTTGGGAAATTTTAATAACTTTTTACCTTTATTATATTGCGAAAGAAAC
TTTATGATATTATATCTATACCTCATGTTAATCGCCGAAACATCCCTTAA
TTCCAAATGAAGATTTGACAAAGATATAGAGGTTTTTCAAGTTTACTAAG
TTACGTAAATTAAGCCATCAAAGCAAACGTTCAATTTGCATAAGTA

Coding sequence (CDS) from alignment at scaffold_172:14763..18558-

>TCONS_00050460 ID=TCONS_00050460|Name=TCONS_00050460|organism=Clytia hemisphaerica|type=CDS|length=7335bp|location=Sequence derived from alignment at scaffold_172:14763..18558- (Clytia hemisphaerica)
AATTCGACGGACTTGATTTGGATTGGGAATACCCCGGACACAGAGGAAGT
CCACCAGAAGATAAACAAAGATTCACAGAATTCTGCCAAATCCTCAAAGC
AGAATATTCATCAAGAGGACTTCTCCTTACAGCCGCTGTTGCTGCTGGTC
CCTCAACCGTCCAAGGGGCGTATGAAATATTACCAATCTCTAAGGAGTTG
GATTTCATCAACTTAATGGCTTATGATTTGTATGGAAGCTGGGGACCTTC
GACTGGCCACCACACCAATATGAATTCAAACAGCCCACTCAATGTAATTA
GCTCCGTCGAAATATGGCTCGCCTCAGGTATGGACCCTGATAAATTAGTC
CTGGGACTGGCACCATACGGCCGAACTTTTACTCTATCAGACAAATGCAA
CAATGGCGTTGGAGCACCTTTTATTGCACCTGGCACACCAGGACCGTACA
CAGGTGAAGCTGGCTTCAAAGCGTATTACGAAATTTGTAACAGCGCCTGG
ACCAGTAAAGTTTGCACTGGGAATAGCGAGGCTCGAGCACCACACGGAGT
AGCGAATGGCGTTTGGGTTGGTTTTGATGATGAAGAAAGCGTCGTGTACA
AAGTCAACAATATTGTGAAAGACATGGGTTTAGGAGGAATCATGTTTTGG
GCGCTTGATTTGGATGATTTTACTGGATCATGTGGAGGTGAGAAATATCC
AATCATAAAGGCAGCAAATCGCGCTTTATTGGAAGAAAATGCACCAGTCT
TTTCATCATGTCAAGATTTTTCCGATTGCGGAGGAATCAAACCTACAACA
ACATCAACAACGACAAAGTCTACAGTTCGCCCACCAGTTTCTACCTCCAC
TACGACGACTTCCCTTCCTTCAGGAGGTTGCCAAATGCCTCCAGTAAGTG
AACGAAAAGAATGCTGGCTCAACAAAGACGGTCCTTGGGGAAAACAACCA
TCTATTGAACAATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAA
TAAACAAATGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTA
CAACCACAACGACTATACCGACAACAACAACAACTTCACCGCTTATTTCT
CCAACAACAACGACCACAACTCAGTCCACAACGAAATCAACCACCCAAAG
CACTACACGAAGCTCCACTACCAAATCAACAACACAGAGCACTTCAACAA
CAAAAGAAACACCAAAACCGACCCTTCCACCACCAACCTCAAGCACGACA
ACCACACAACCTTTAGGAGGTTGTCAAATGCCTCCTGTAAGCGACCGAAA
AGAATGCTGGCTCAACAAAGAAGGCCCATGGGGAAATAACCCAGCTATCG
GACCATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAATGAACAA
ATGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTACAACGAC
GACGACGACAATTTCCCCTACAACAACCTCCAGCACGACCAAGTCATCTA
CGAAACCAACGACACAACGTACAACAACTATCACTCAACCAACAGAGAGC
TCTACAACAACCACTCAGCAGCCTCCCAACACATGTTTCCTTCCAGCCTA
CGGGAAACGTAAAAACTGCAAATCTAACCCAAATGGTATTCTTGCAGAAT
TCAAAGAAATTGATCAATTTTGTCGCGCTGGTTGTGAGACCGACCCCAAG
TGCTGTGAAGAACTTTGTTGCTGTGAGGAAAAAGATATGACAACAGACAG
CACAACAACCACGACCAAACCAACGACTACTACAACACAACCGACAAGCA
CCACGACAACAACAACCATGACCAAACCAACAACTACTACAACTAAATCA
ACCACAACAACAACAACTGAGCAGCCATCAGGAGAATGTGAGATGCCAGA
ACTCTTAGATCGAACTGAATGTTGGTTGAATGAGGATGGTCCGTTTAAAT
CGAGTGTTGGAATGCACAAATGGTGTATGAACACTTGTGTTGTTGATCCT
TCTTGTACGACCCTCTACTGCTGTTGTCAGTGAGTCAACAGTTTGAAGCA
TAACGATCCACAATTAAAAACGTTATTGGCGATCGGAGGTTGGAACTTTG
GATCAGAAACGTTCTCAAAATTGGTGTCCGACATTGATGACATGATGGTA
TTCGCCATTCGCTCCGCTGACTACTTGCAGTTGCATGATGAAGGTCTCAA
TCTTGGTCTGTTTTACAGCAATAATATGGATCAGTCTTGTACGTGCGCAA
GCCTCCGATAGACGGGTTTGTTACTACACCAACTGGGCTCAATATCGGAA
TGGAATAGGAAAATACTTTCCATCGGATTATGAAACCGGTTTATGTACAC
ACATTATTTACGCATTTGCGAATGTTCTGGAAGATACAGATGGTTTTTAT
TTGCATCCTTATGAGTGGAACGATCTGCAGCTAGGCTATCCAGGGAATTC
GACGGACTTGATTTGGATTGGGAATACCCCGGACACAGAGGAAGTCCACC
AGAAGATAAACAAAGATTCACAGAATTCTGCCAAATCCTCAAAGCAGAAT
ATTCATCAAGAGGACTTCTCCTTACAGCCGCTGTTGCTGCTGGTCCCTCA
ACCGTCCAAGGGGCGTATGAAATATTACCAATCTCTAAGGAGTTGGATTT
CATCAACTTAATGGCTTATGATTTGTATGGAAGCTGGGGACCTTCGACTG
GCCACCACACCAATATGAATTCAAACAGCCCACTCAATGTAATTAGCTCC
GTCGAAATATGGCTCGCCTCAGGTATGGACCCTGATAAATTAGTCCTGGG
ACTGGCACCATACGGCCGAACTTTTACTCTATCAGACAAATGCAACAATG
GCGTTGGAGCACCTTTTATTGCACCTGGCACACCAGGACCGTACACAGGT
GAAGCTGGCTTCAAAGCGTATTACGAAATTTGTAACAGCGCCTGGACCAG
TAAAGTTTGCACTGGGAATAGCGAGGCTCGAGCACCACACGGAGTAGCGA
ATGGCGTTTGGGTTGGTTTTGATGATGAAGAAAGCGTCGTGTACAAAGTC
AACAATATTGTGAAAGACATGGGTTTAGGAGGAATCATGTTTTGGGCGCT
TGATTTGGATGATTTTACTGGATCATGTGGAGGTGAGAAATATCCAATCA
TAAAGGCAGCAAATCGCGCTTTATTGGAAGAAAATGCACCAGTCTTTTCA
TCATGTCAAGATTTTTCCGATTGCGGAGGAATCAAACCTACAACAACATC
AACAACGACAAAGTCTACAGTTCGCCCACCAGTTTCTACCTCCACTACGA
CGACTTCCCTTCCTTCAGGAGGTTGCCAAATGCCTCCAGTAAGTGAACGA
AAAGAATGCTGGCTCAACAAAGACGGTCCTTGGGGAAAACAACCATCTAT
TGAACAATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAATAAAC
AAATGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTACAACC
ACAACGACTATACCGACAACAACAACAACTTCACCGCTTATTTCTCCAAC
AACAACGACCACAACTCAGTCCACAACGAAATCAACCACCCAAAGCACTA
CACGAAGCTCCACTACCAAATCAACAACACAGAGCACTTCAACAACAAAA
GAAACACCAAAACCGACCCTTCCACCACCAACCTCAAGCACGACAACCAC
ACAACCTTTAGGAGGTTGTCAAATGCCTCCTGTAAGCGACCGAAAAGAAT
GCTGGCTCAACAAAGAAGGCCCATGGGGAAATAACCCAGCTATCGGACCA
TGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAATGAACAAATGTG
TTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTACAACGACGACGA
CGACAATTTCCCCTACAACAACCTCCAGCACGACCAAGTCATCTACGAAA
CCAACGACACAACGTACAACAACTATCACTCAACCAACAGAGAGCTCTAC
AACAACCACTCAGCAGCCTCCCAACACATGTTTCCTTCCAGCCTACGGGA
AACGTAAAAACTGCAAATCTAACCCAAATGGTATTCTTGCAGAATTCAAA
GAAATTGATCAATTTTGTCGCGCTGGTTGTGAGACCGACCCCAAGTGCTG
TGAAGAACTTTGTTGCTGTGAGGAAAAAGATATGACAACAGACAGCACAA
CAACCACGACCAAACCAACGACTACTACAACACAACCGACAAGCACCACG
ACAACAACAACCATGACCAAACCAACAACTACTACAACTAAATCAACCAC
AACAACAACAACTGAGCAGCCATCAGGAGAATGTGAGATGCCAGAACTCT
TAGATCGAACTGAATGTTGGTTGAATGAGGATGGTCCGTTTAAATCGAGT
GTTGGAATGCACAAATGGTGTATGAACACTTGTGTTGTTGATCCTTCTTG
TACGACCCTCTACTGCTGTTGTCAGTGAGTCAACAGTTTGAAGCATAACG
ATCCACAATTAAAAACGTTATTGGCGATCGGAGGTTGGAACTTTGGATCA
GAAACGTTCTCAAAATTGGTGTCCGACATTGATGACATGATGGTATTCGC
CATTCGCTCCGCTGACTACTTGCAGTTGCATGATGAAGGTCTCAATCTTG
GTCTGTTTTACAGCAATAATATGGATCAGTCTTGTACGTGCGCAAGCCTC
CGATAGACGGGTTTGTTACTACACCAACTGGGCTCAATATCGGAATGGAA
TAGGAAAATACTTTCCATCGGATTATGAAACCGGTTTATGTACACACATT
ATTTACGCATTTGCGAATGTTCTGGAAGATACAGATGGTTTTTATTTGCA
TCCTTATGAGTGGAACGATCTGCAGCTAGGCTATCCAGGGAATTCGACGG
ACTTGATTTGGATTGGGAATACCCCGGACACAGAGGAAGTCCACCAGAAG
ATAAACAAAGATTCACAGAATTCTGCCAAATCCTCAAAGCAGAATATTCA
TCAAGAGGACTTCTCCTTACAGCCGCTGTTGCTGCTGGTCCCTCAACCGT
CCAAGGGGCGTATGAAATATTACCAATCTCTAAGGAGTTGGATTTCATCA
ACTTAATGGCTTATGATTTGTATGGAAGCTGGGGACCTTCGACTGGCCAC
CACACCAATATGAATTCAAACAGCCCACTCAATGTAATTAGCTCCGTCGA
AATATGGCTCGCCTCAGGTATGGACCCTGATAAATTAGTCCTGGGACTGG
CACCATACGGCCGAACTTTTACTCTATCAGACAAATGCAACAATGGCGTT
GGAGCACCTTTTATTGCACCTGGCACACCAGGACCGTACACAGGTGAAGC
TGGCTTCAAAGCGTATTACGAAATTTGTAACAGCGCCTGGACCAGTAAAG
TTTGCACTGGGAATAGCGAGGCTCGAGCACCACACGGAGTAGCGAATGGC
GTTTGGGTTGGTTTTGATGATGAAGAAAGCGTCGTGTACAAAGTCAACAA
TATTGTGAAAGACATGGGTTTAGGAGGAATCATGTTTTGGGCGCTTGATT
TGGATGATTTTACTGGATCATGTGGAGGTGAGAAATATCCAATCATAAAG
GCAGCAAATCGCGCTTTATTGGAAGAAAATGCACCAGTCTTTTCATCATG
TCAAGATTTTTCCGATTGCGGAGGAATCAAACCTACAACAACATCAACAA
CGACAAAGTCTACAGTTCGCCCACCAGTTTCTACCTCCACTACGACGACT
TCCCTTCCTTCAGGAGGTTGCCAAATGCCTCCAGTAAGTGAACGAAAAGA
ATGCTGGCTCAACAAAGACGGTCCTTGGGGAAAACAACCATCTATTGAAC
AATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAATAAACAAATG
TGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTACAACCACAAC
GACTATACCGACAACAACAACAACTTCACCGCTTATTTCTCCAACAACAA
CGACCACAACTCAGTCCACAACGAAATCAACCACCCAAAGCACTACACGA
AGCTCCACTACCAAATCAACAACACAGAGCACTTCAACAACAAAAGAAAC
ACCAAAACCGACCCTTCCACCACCAACCTCAAGCACGACAACCACACAAC
CTTTAGGAGGTTGTCAAATGCCTCCTGTAAGCGACCGAAAAGAATGCTGG
CTCAACAAAGAAGGCCCATGGGGAAATAACCCAGCTATCGGACCATGGTG
TGCCACGAGTTGTAAAACCGACCCGAGTTGCAATGAACAAATGTGTTGCT
GTAAAGGTTCAACGACTCCCACAACAACTACTACAACGACGACGACGACA
ATTTCCCCTACAACAACCTCCAGCACGACCAAGTCATCTACGAAACCAAC
GACACAACGTACAACAACTATCACTCAACCAACAGAGAGCTCTACAACAA
CCACTCAGCAGCCTCCCAACACATGTTTCCTTCCAGCCTACGGGAAACGT
AAAAACTGCAAATCTAACCCAAATGGTATTCTTGCAGAATTCAAAGAAAT
TGATCAATTTTGTCGCGCTGGTTGTGAGACCGACCCCAAGTGCTGTGAAG
AACTTTGTTGCTGTGAGGAAAAAGATATGACAACAGACAGCACAACAACC
ACGACCAAACCAACGACTACTACAACACAACCGACAAGCACCACGACAAC
AACAACCATGACCAAACCAACAACTACTACAACTAAATCAACCACAACAA
CAACAACTGAGCAGCCATCAGGAGAATGTGAGATGCCAGAACTCTTAGAT
CGAACTGAATGTTGGTTGAATGAGGATGGTCCGTTTAAATCGAGTGTTGG
AATGCACAAATGGTGTATGAACACTTGTGTTGTTGATCCTTCTTGTACGA
CCCTCTACTGCTGTTGTCAGTGAGTCAACAGTTTGAAGCATAACGATCCA
CAATTAAAAACGTTATTGGCGATCGGAGGTTGGAACTTTGGATCAGAAAC
GTTCTCAAAATTGGTGTCCGACATTGATGACATGATGGTATTCGCCATTC
GCTCCGCTGACTACTTGCAGTTGCATGATGAAGGTCTCAATCTTGGTCTG
TTTTACAGCAATAATATGGATCAGTCTTGTACGTGCGCAAGCCTCCGATA
GACGGGTTTGTTACTACACCAACTGGGCTCAATATCGGAATGGAATAGGA
AAATACTTTCCATCGGATTATGAAACCGGTTTATGTACACACATTATTTA
CGCATTTGCGAATGTTCTGGAAGATACAGATGGTTTTTATTTGCATCCTT
ATGAGTGGAACGATCTGCAGCTAGGCTATCCAGGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_031955	XLOC_031955	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00050460-protein	TCONS_00050460-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00050460-exon-scaffold_172-1575043694:17764..18558	TCONS_00050460-exon-scaffold_172-1575043694:17764..18558	Clytia hemisphaerica	exon
TCONS_00050460-exon-scaffold_172-1575043694:17487..17640	TCONS_00050460-exon-scaffold_172-1575043694:17487..17640	Clytia hemisphaerica	exon
TCONS_00050460-exon-scaffold_172-1575043694:14763..17202	TCONS_00050460-exon-scaffold_172-1575043694:14763..17202	Clytia hemisphaerica	exon
TCONS_00050460-exon-scaffold_172-1510915933:17764..18558	TCONS_00050460-exon-scaffold_172-1510915933:17764..18558	Clytia hemisphaerica	exon
TCONS_00050460-exon-scaffold_172-1510915933:17487..17640	TCONS_00050460-exon-scaffold_172-1510915933:17487..17640	Clytia hemisphaerica	exon
TCONS_00050460-exon-scaffold_172-1510915933:14763..17202	TCONS_00050460-exon-scaffold_172-1510915933:14763..17202	Clytia hemisphaerica	exon
TCONS_00050460-exon-scaffold_172-1491911889:17764..18558	TCONS_00050460-exon-scaffold_172-1491911889:17764..18558	Clytia hemisphaerica	exon
TCONS_00050460-exon-scaffold_172-1491911889:17487..17640	TCONS_00050460-exon-scaffold_172-1491911889:17487..17640	Clytia hemisphaerica	exon
TCONS_00050460-exon-scaffold_172-1491911889:14763..17202	TCONS_00050460-exon-scaffold_172-1491911889:14763..17202	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_172	supercontig	scaffold_172:14763..18558 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.022313	0.0217587	0.012632	0.0123584	0.0902712	0.107	0.215152	0	0.0527007	0.1258	0.000464677	0	0.484874	1.16354	4.20568e-07	0	0	0	0.137639	1.11002e-08	0	3.35059e-06	0.0383755	0	0	0.106903	0.0275791	0	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR011583	Chitinase_II
IPR001223	Glyco_hydro18_cat
IPR001579	Glyco_hydro_18_chit_AS
IPR017853	Glycoside_hydrolase_SF
IPR029070	Chitinase_insertion

Vocabulary: **Molecular Function**
Term	Definition
GO:0008061	chitin binding
GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0008061	chitin binding
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

Blast

[Close]

BLAST of TCONS_00050460 vs. Swiss-Prot (Human)
Match: CHIT1 (Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 3.548e-96
Identity = 167/389 (42.93%), Postives = 230/389 (59.13%), Query Frame = 1

Query:  556 VCFTAIIWISLVRAQASDRRVCYYTNWAQYRNGIGKYFPSDYETGLCTHIIYAFANVLEDTDGFYLHPYEWNDLQLGYPGVNSLKHNDPQLKTLLAIGGWNFGSETFSKLVSDIDDMMVFAIRSADYLQLHEFDGLDLDWEYPGHRGSPPEDKQRFTEFCQILKAEYSSRG-------LLLTAAVAAGPSTVQGAYEILPISKELDFINLMAYDLYGSWGPSTGHHTNM-------NSNSPLNVISSVEIWLASGMDPDKLVLGLAPYGRTFTLSDKCNNGVGAPFIAPGTPGPYTGEAGFKAYYEICNSAWTSKVCTGNSEARAPHGVANGVWVGFDDEESVVYKVNNIVKDMGLGGIMFWALDLDDFTG-SCGGEKYPIIKAANRAL 1677
            V +   + + ++   ++ + VCY+TNWAQYR G  ++ P D +  LCTH+IYAFA +        L   EWND  L Y   N LK  +P+LKTLLAIGGWNFG++ F+ +V+  ++   F   +  +L+ + FDGLDLDWEYPG +GSP  DK+RFT   Q L   +           LLL+AAV AG + V   YE+  I++ LDF+NLMAYD +GSW   TGH++ +        + + LNV ++V+ WL  G    KL+LG+  YGR+FTL+   +  VGAP    GTPGP+T E G  AYYE+C  +W         + + P+   +  WVGFDD ES   KV + +K  GLGG M WALDLDDF G SC   +YP+I+   + L
Sbjct:    5 VAWAGFMVLLMIPWGSAAKLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQ----LSTTEWNDETL-YQEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVC--SWKGATKQRIQDQKVPYIFRDNQWVGFDDVESFKTKV-SYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQEL 385

The following BLAST results are available for this feature:

BLAST of TCONS_00050460 vs. Swiss-Prot (Human)

BLAST of TCONS_00050460 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CHIT1	3.548e-96	42.93	Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV...	[more]

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TCONS_00050460 (transcript) - C. hemisphaerica