TCONS_00050453 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050453
Unique NameTCONS_00050453
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4164

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050453 ID=TCONS_00050453|Name=TCONS_00050453|organism=Clytia hemisphaerica|type=transcript|length=4164bp
ctaagctcatattctgaatttttcttttttggaatatctttcttGACATG
GAACTtacatccgttttttatttcaagttaatatcttttttcgttaAGTT
TTCATTGAGCTTTTTCGAATCTCGAATGCGAATCCCGAATACCGAATACC
TAACTCCAGCGAATCTACCATGAGTTgaggctctttcattttttaatatc
CCTGTTCGGGCAGAAAGTAGATTAAAATGCTATGTTATGCTATTATGGTC
TATAAAAAAGAGAATGGAAGTAAAAGATGGGTATTTATGCTAaccatccc
tgtctcactgaaagTATCTTCTTTATCTCTAAGGAATGAAGACACAAACC
TTGATTTATATTAGATTTATTTatattcttcctttttcttcttcgggatg
tagaaaaaaatggatttcagatggttttggagtcattttttgctggattt
tttatgtctgagcaacagaaagtttgaaatatattGTGCATTGTGTATCA
AAAAGTCACCTTGTTTTGTTGTTCTAAATCTGATATCTAGTCCTTCTAGT
TTAGATACAACCCTGTCCTATGAATGACCTATAAAATGTTTCAcaagaag
aataaaattcatttctttcttttcaattattgcaagtttcttgatttttg
aagttcattttgggacatttcgcctgttttttcttccccgcctccttctt
aaaaaaaattcacttttttctacgCCAATCAGATTCCGCGTCTTTTTCCC
GATCAGCCAATCACAGTGGCTTGCAGAGGGCATTACGTAATTCtttgtct
ggtctgtaattttgatgtttcctcgaatccaatgaattttctttagcagA
GTAATGGGGCCCACTAAACCTGCAAATGCAGCGATTGTATTGGCTATCAA
AAagccattttagatttttttgaaagccaGATAAATTGGGGACCAAACCG
TGGGTCGGCCCATGTGGCTTAGCCCTGACCCTAGATCAGGTGCCCCTATG
CACAGGCCACCCTAAACAGTTGTTTTTTACCCTTAACTATCGGCCGAGTC
gttgcttttttttatatacagcAATTTTAGGACCTTACTTCAGTGGTCGT
TTACTCAcggtttttgacagttttaacaaaagagttTGCCCTAAACTTCA
GTTAGGTTATATTTTCACATTATATCAATTACACAATATTCTGAACTACT
TGTTTATACGTTTGAATTTGAGCTCAAAACTCTTcattatgaaaatcaaa
aaatttgaaaaatttgataaattttactcaaaatttactTGCTATGCTCG
TTAAAATTACCGGCTAACTTACatttccttatttgcagcactgcatATTC
AGGGTCATTGTTCTTGTTTACTCTATTACAAAAAGCCTTTTTTTAATGAG
GAGCTTATTTGTCTAATGTTCAGTATGAAAAATTAATATAAATTTGCTGT
TTATTAAGGTATTGGGTACTGTTTTAATTACCGCTCGCCAAAAATATTAA
TTATATTTATTAATTCTTTGTCAAACCAAACAATAATAGCTGCatttttt
ttcactgttcaactatattttaattctttttcagtCATATTTAAATGACT
CACACACTTccttctttttatttatttctagccagcagcgtggtggcagg
ggggacTTTTTTGTATAAACTTTTTGTGAAATGTCTTTTTTAGCTTTCAT
TAGTTCAAACTTACAATGGCTGCGTTGGTACCATCTTTTATTTCCCTACT
GTCTCAATTTTCACGAATCATTATCAGACATTCCTCAAGCAAAAGTTATG
ATGTAAAGAAGCTAATTATACCCCTTCCTAAAACATCTCATATTGTCCTT
AGCAACGAGGTTGTCAGAGACagaaagttattttttattggtGATGTTCA
TGGATGTTTAGATGAATTGAAAGAACTACTCCAAAAAGTAAACGAACGCT
TTTCAACTGAGGAATACCTACCTATATTTGTTGGAGATCTTGTAAACAAA
GGACCTGAGAATGTTGGCTCACTTCAATATGTTAGAAATTTAGAGCATTT
TGCAGTCAAAGGAAACCACGATGCAGCTGCACTGAGAGAAGTACTCATGA
TTGAAAAACATAATGATTATGATACGCCAGCCTGGTGGCAGTGGGTTAAA
GGTTTAAATTGTGATGACATTGATTATTTAAAGGAATTACCATACACATT
AAGTTTTCCAGATTTCAATGCAATTGTAGTACACGCAGGTCTTTTACCAA
AAGTTGATTTAGAGAATCAAAGTATCAAagatatgattttgatgagaaac
ATTGTTGAATTGGATGCAGAAAATTACCAGTCAGCAGAATCCCTTGACCA
AGGTAAACCTTGGGCATCATTATGGCCAGGACCAGAGCATATCTATTTTG
GCCATGATGCTAGACGAAAGTTTCAAAGTTACGAATTCGCAACTGGGCTA
GATACAGGCTGTGTTTATGGTAACCAATTAACAGGCTTACTTTTGGATAA
AGAtggaacaaaagaaattatccaAGTGCAAGCTAAAAGTGTTTACCAGA
AACCAACTGGTTAATCCtggttattttacattcattctCGAATTGAAATC
acacaattttatttttgtatattttgcaCAATTATTTAAGTTATTTTAAC
CAATGTAATATCTAAATTTATCTTGATTGATCGGCTTTTATATCAACTTT
GTAATAgattaaatttgaatttattaaggttctttgtttttttgggaaat
cagttgaaattgttttattttcaattttaaatttgaatttttaattcAGA
TTAATTAActtaaattcaattgtttttctttatgcCACCTTTATCTGAAA
TCTGTATCTGGTTTCTTTATATATAAGTATACCTAATTTTGCATTCATAT
ATATAGTAAACTATTCtcatttttagacaaaaaataTACTCATAAATGCA
ACTATCCACAACTTGAGAATCTTCAGTTTTTTACCCTAAAACTTGACATG
GCTACATTGGTGCAAAATCCGCCGCCATCTGTTACACCTGCTGCAGATGC
ACCTCCTCCTCAACAACAAGCTCAACCAACACAGCAACCGCAACAACATC
AACAGCAACAGCACCACCACCATGGCGGTAATTACAACCAGCGTCAACAA
TTCCACCATCACCAACATCAACACCATCGGCCACACCATCACCACCATAG
GCACCCTAATTTCCAACATCACCACAACCGACAACACCACCATCATCATG
CGTCTTATACAGCAGCTGTCCCAATGATCTTTACGCAAGCTAATGGCAGT
ACAACCACTTCAACAAATTTATTCAAACAAATCAATATTATTCCAGGTCT
AGATGCTGAAAATGCAATCGTTGATACAGGTGTAAGAGTTTTCAGACCAA
ACACTCAAGTTCAAACACAAACTGCGCCTGCAGAGTACGATGGGAAACGA
ATGCGACGCTCCATTCAAAGGAGAACTGTGGATTATAATGCATCAACAAT
ACAACTCTTAAAAcatcgATTATACAAAAGATCCATTCTTCAAAAACCAA
TTGTACAATGTGACCCACTTTATTACACAGATATTGTTCAACCTCGCTCT
TTACAACACAACCCAGTGAATTCTGTAACGTCAAGATTTGTAAGGGCGTC
CACAAACAAAGTTAGATGTCCTGTGTTTACCGTTGCTtGGACACCTGAAG
GCAGAAGAGTTTTAACAGGGACAAGCAGCGGAGAATTTACACTATGGAAT
GGATTGACATTCAACTTTGAGACTATTCTTCAGGCACACGACAGTGCAGT
TCGAGCGATGGAGTGGTCTCACAACGATATGTGGCTTTTATCAGGAGATC
ACAATGGAATCATCAAATACTGGCAAAGCAATATGAATAATGTGAAACTA
ATACAAGCTCACAATGACCCTATCAGAGGATTGAGTTTTTGTCCAACCGA
CAATAAATTTGTGACATGCTCTGATGATGGTCTACTTAAAGTGTGGGATT
TTTACCGATGCTTAGAAGAACGAGTGTTAAGAGGCCATGGAGCAGATGTT
AAATGCGTAGGCTGGCATCCCTCAAAAAGTTTGGTAGCCTCCGGAAGCAA
AGACAGTCAGCAGCCTCTCAAATTGTGGGATCCAAGATCAGCCAGCAGTC
TAGCAACAATGTAT
Run BLAST on NCBI

transcript from alignment at scaffold_172:106597..114545+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050453 ID=TCONS_00050453|Name=TCONS_00050453|organism=Clytia hemisphaerica|type=transcript|length=7949bp|location=Sequence derived from alignment at scaffold_172:106597..114545+ (Clytia hemisphaerica)
ctaagctcatattctgaatttttcttttttggaatatctttcttGACATG
GAACTtacatccgttttttatttcaagttaatatcttttttcgttaAGTT
TTCATTGAGCTTTTTCGAATCTCGAATGCGAATCCCGAATACCGAATACC
TAACTCCAGCGAATCTACCATGAGTTgaggctctttcattttttaatatc
CCTGTTCGGGCAGAAAGTAGATTAAAATGCTATGTTATGCTATTATGGTC
TATAAAAAAGAGAATGGAAGTAAAAGATGGGTATTTATGCTAaccatccc
tgtctcactgaaagTATCTTCTTTATCTCTAAGGAATGAAGACACAAACC
TTGATTTATATTAGATTTATTTatattcttcctttttcttcttcgggatg
tagaaaaaaatggatttcagatggttttggagtcattttttgctggattt
tttatgtctgagcaacagaaagtttgaaatatattGTGCATTGTGTATCA
AAAAGTCACCTTGTTTTGTTGTTCTAAATCTGATATCTAGTCCTTCTAGT
TTAGATACAACCCTGTCCTATGAATGACCTATAAAATGTTTCAcaagaag
aataaaattcatttctttcttttcaattattgcaagtttcttgatttttg
aagttcattttgggacatttcgcctgttttttcttccccgcctccttctt
aaaaaaaattcacttttttctacgCCAATCAGATTCCGCGTCTTTTTCCC
GATCAGCCAATCACAGTGGCTTGCAGAGGGCATTACGTAATTCtttgtct
ggtctgtaattttgatgtttcctcgaatccaatgaattttctttagcagA
GTAATGGGGCCCACTAAACCTGCAAATGCAGCGATTGTATTGGCTATCAA
AAagccattttagatttttttgaaagccaGATAAATTGGGGACCAAACCG
TGGGTCGGCCCATGTGGCTTAGCCCTGACCCTAGATCAGGTGCCCCTATG
CACAGGCCACCCTAAACAGTTGTTTTTTACCCTTAACTATCGGCCGAGTC
gttgcttttttttatatacagcAATTTTAGGACCTTACTTCAGTGGTCGT
TTACTCAcggtttttgacagttttaacaaaagagttTGCCCTAAACTTCA
GTTAGGTTATATTTTCACATTATATCAATTACACAATATTCTGAACTACT
TGTTTATACGTTTGAATTTGAGCTCAAAACTCTTcattatgaaaatcaaa
aaatttgaaaaatttgataaattttactcaaaatttactTGCTATGCTCG
TTAAAATTACCGGCTAACTTACatttccttatttgcagcactgcatATTC
AGGGTCATTGTTCTTGTTTACTCTATTACAAAAAGCCTTTTTTTAATGAG
GAGCTTATTTGTCTAATGTTCAGTATGAAAAATTAATATAAATTTGCTGT
TTATTAAGGTATTGGGTACTGTTTTAATTACCGCTCGCCAAAAATATTAA
TTATATTTATTAATTCTTTGTCAAACCAAACAATAATAGCTGCatttttt
ttcactgttcaactatattttaattctttttcagtCATATTTAAATGACT
CACACACTTccttctttttatttatttctagccagcagcgtggtggcagg
ggggacTTTTTTGTATAAACTTTTTGTGAAATGTCTTTTTTAGCTTTCAT
TAGTTCAAACTTACAATGGCTGCGTTGGTACCATCTTTTATTTCCCTACT
GTCTCAATTTTCACGAATCATTATCAGACATTCCTCAAGCAAAAGTTATG
ATGTAAAGAAGCTAATTATACCCCTTCCTAAAACATCTCATATTGTCCTT
AGCAACGAGGTTGTCAGAGACagaaagttattttttattggtGATGTTCA
TGGATGTTTAGATGAATTGAAAGAACTACTCCAAAAAGTAAACGAACGCT
TTTCAACTGAGGAATACCTACCTATATTTGTTGGAGATCTTGTAAACAAA
GGACCTGAGAATGTTGGCTCACTTCAATATGTTAGAAATTTAGAGCATTT
TGCAGTCAAAGGAAACCACGATGCAGCTGCACTGAGAGAAGTACTCATGA
TTGAAAAACATAATGATTATGATACGCCAGCCTGGTGGCAGTGGGTTAAA
GGTTTAAATTGTGATGACATTGATTATTTAAAGGAATTACCATACACATT
AAGTTTTCCAGATTTCAATGCAATTGTAGTACACGCAGGTCTTTTACCAA
AAGTTGATTTAGAGAATCAAAGTATCAAagatatgattttgatgagaaac
ATTGTTGAATTGGATGCAGAAAATTACCAGTCAGCAGAATCCCTTGACCA
AGGTAAACCTTGGGCATCATTATGGCCAGGACCAGAGCATATCTATTTTG
GCCATGATGCTAGACGAAAGTTTCAAAGTTACGAATTCGCAACTGGGCTA
GATACAGGCTGTGTTTATGGTAACCAATTAACAGGCTTACTTTTGGATAA
AGAtggaacaaaagaaattatccaAGTGCAAGCTAAAAGTGTTTACCAGA
AACCAACTGGTTAATCCtggttattttacattcattctCGAATTGAAATC
acacaattttatttttgtatattttgcaCAATTATTTAAGTTATTTTAAC
CAATGTAATATCTAAATTTATCTTGATTGATCGGCTTTTATATCAACTTT
GTAATAgattaaatttgaatttattaaggttctttgtttttttgggaaat
cagttgaaattgttttattttcaattttaaatttgaatttttaattcAGA
TTAATTAActtaaattcaattgtttttctttatgcCACCTTTATCTGAAA
TCTGTATCTGGTTTCTTTATATATAAGTATACCTAATTTTGCATTCATAT
ATATAGTAAACTATTCtcatttttagacaaaaaataTACTCATAAATGCA
ACTATCCACAACTTGAGAATCTTCAGTTTTTTACCCTAAAACTTGACATG
GCTACATTGGTGCAAAATCCGCCGCCATCTGTTACACCTGCTGCAGATGC
ACCTCCTCCTCAACAACAAGCTCAACCAACACAGCAACCGCAACAACATC
AACAGCAACAGCACCACCACCATGGCGGTAATTACAACCAGCGTCAACAA
TTCCACCATCACCAACATCAACACCATCGGCCACACCATCACCACCATAG
GCACCCTAATTTCCAACATCACCACAACCGACAACACCACCATCATCATG
CGTCTTATACAGCAGCTGTCCCAATGATCTTTACGCAAGCTAATGGCAGT
ACAACCACTTCAACAAATTTATTCAAACAAATCAATATTATTCCAGGTCT
AGATGCTGAAAATGCAATCGTTGATACAGGTTAGTTTGAGATTTGTTTTA
CCAGATGTGATATGTAGATACAGATTAGTTTGAGTTGCTGTCTGAGTTTT
ATCAATGATTctcctattttttcaaaatgctaaaatataatTGGCTAAAA
CCAACAATTAAAAATTTGTCTTTTATACTAATATAGTATTTGTTTTTAAG
CTAtctttcatgcattttttttGGTTTATAGGTGTAAGAGTTTTCAGACC
AAACACTCAAGTTCAAACACAAACTGCGCCTGCAGAGTACGATGGGAAAC
GAATGCGACGCTCCATTCAAAGGAGAACTGTGGATTATAATGCATCAACA
ATACAACTCTTAAAAGTATGTTCTTTTTATTGAGTTTTTCTTCTCTCTTT
GTGTGGTTGTGTATTATTTAAGAACAATTATTTTAAATCTTTATACCAAA
AAAGGTATATTTGCATATTTATTAAAGGATTGAGGTTCAAGGCGCGCCGT
GGGCCTCTAAGAACCTGTCTTTTTACAATCGCTTGttgttacaattttct
ttaggtaaagttttgttctggggcttcccctaactttaaattgaatgttt
ttgtctttcatttgagcattGAGCTCATGTGCTCTCTTGCACAATTCTTT
GATTGCCAGGTCTTCTGTTGCTCGATAGGATGAAGGAGGGCCTTTGTATG
TCGCGATGGCTCTCAAGACTTtgttcttgtcttcttcattttcgaatacT
ACCTTGATTAGTCGATACTTCCCTTTCTCCTCTCTTTCTTCATATTTATT
GGTCTGTAAAATGTTCACAGTTAAATCTTTCAATCTATGGTAAGTGAACC
CAtgaccttgcgcaccgtagttGAAAGCTCTGCCTTCATGCTTGCTAGGA
CTGCTATTTACAATTTCTTTTGTCTCTTATTGTCTGTGTTATTGTTTGCA
AAGTTCAAGTTCTGCTTTCTATCTAATTCTTTTGATTAACATTCAATTCA
TTTTAGACCCactcatttttttctattttagcatcgATTATACAAAAGAT
CCATTCTTCAAAAACCAATTGTACAATGTGACCCACTTTATTACACAGAT
GTAAGTTATAAACATTGATGAAAACAACTGACTGAGATTTAAATCGGCAA
ACAAGAAGAATATCAATTAATAAGAaactatttcattgatttccCTTTTA
ATTGAATGCTCAAAAATTTATCGAACAGCCTAACTGCATGGGGGTAGATC
TATTTAATCCTGCAATAGGCTCTGATTTTTATTGTTTGCAAGCACATTCT
GGAAGTAAATTTATATTCATTTGggtataacttttgatccaatggaccaa
attttaaaaataacatattaaaatttaattttatctttcttctttccaac
gcaaaaataattattattttttaattcataGTTTGAAtgagaaaatcaaa
tttgaagagAGAAATATTTTGTGGCACACCCCGTAATTTAAGACAGTACT
ACTCCCTCCAttgtttttcttcttaaaaCATATCTTTATTAAGGAGATTT
GATTCTTTGGATTTTTATCATTTAGATTGTTCAACCTCGCTCTTTACAAC
ACAACCCAGTGAATTCTGTAACGTCAAGATTTGTAAGGGCGTCCACAAAC
AAAGTTAGATGTCCTGTGTTTACCGTTGCTGTAAGAACTCTTTcttaaaa
acatcatttttgttttattacatagcgtcagccccccctGCTGGTTGGGG
GGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNATACACTCACTCTTGTTAAAATGATAGcactttttgaagttttcagC
AGAAGTTGTTATGTGCTATTTTGTTAatccttttaaacttttttcttagt
GGACACCTGAAGGCAGAAGAGTTTTAACAGGGACAAGCAGCGGAGAATTT
ACACTATGGAATGGATTGACATTCAACTTTGAGACTATTCTTCAGgtaat
ttaaattcttttttttgagATTGCGGCCGCATTCAAAAGGCTCTTTTTTC
CAACAATCGATCTGAAAGTAGGGGAGGGTGCCATTCATTCActctggatt
gctccacttaccctatccttctctttaattactgaacatcaagcagagca
gtatcaagtaccattttgtaaAAGTacaaatctttggtatgaccaaGCCA
GGGATTGAACTCGCAACCTAGCGCACTATAGCCAAATACTCTACCCTTGC
ATTGCGGTTGCTTAAAATATTAGATATCTctgaaaaaatactttgataTT
AAGAGATGTACTATTTCAGGCTTTTTTATTGACTCCTTATTGACTCTTTA
TTGACTCGGTAGCAGTTTATCATCATTTAAGATTTAGCTGACGAGATTTT
AGCTGATGTAAACCACTTTAAACCACATGATTGAATTCCAGGTATGAATT
TGTCTGTTTCATTATTTACAGGCACACGACAGTGCAGTTCGAGCGATGGA
GTGGTCTCACAACGATATGTGGCTTTTATCAGGAGATCACAATGGAATCA
TCAAATACTGGCAAAGCAATATGAATAATGTGAAACTAATACAAGCTCAC
AATGACCCTATCAGAGGATTGAGGTGTGTACTTTTGCTCGTTATTTATAA
ATCAGGGGGATGATATTATCGTGTTATAGCCTGTTGCAGAGGGATGTTTA
TTCACGATAACGATTCAAAAGAACTTTTATCAATTTCGAAGACCAATAGT
ACTTAATGACTCTATTTTGATTATGAAATctattttaaatctattttgtt
GATTAAGCTTTTCTACCCTTTGTTTAATTAAAGGGTCTGTTCTTTTCGTT
TAGTTTTTGTCCAACCGACAATAAATTTGTGACATGCTCTGATGATGGTC
TACTTAAAGTGTGGGATTTTTACCGATGCTTAGAAGAACGAGTGTTAAGA
GGTAAATATTACCTTATATCATTTAAATTCAAAGTTTACCATGTTGTAAA
ATTGAAACAAGAGAATCCCCAAAGTAGAGATttgtaaatcaaaataaaca
taGCACattattttcgttttttatttcGACCCCTTTGGTGTCTAAGTTcc
atatttaaaagttttttccctgcaaagcaatatttttacaaagGAAAATA
TGCGACCTCTAACTAAACTTTGCGCTCTGAAATTGACGCCAAGTCCAGTG
AAGTGAATCACTTAACCTCGCCATGGCTAGCTCTGTACCTAAGTCAAATG
AGCCACCTTAACAATAAGGAATCTGCTGCTCAGATGTAGTGATAATAATT
ATCATATTTTCTACACAGGCCATGGAGCAGATGTTAAATGCGTAGGCTGG
CATCCCTCAAAAAGTTTGGTAGCCTCCGGAAGCAAAGACAGTCAGCAGCC
TCTCAAATTGTGGGATCCAAGATCAGCCAGCAGTCTAGCAACAATGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031953XLOC_031953Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050453-exon-scaffold_172-1491911889:106597..109975TCONS_00050453-exon-scaffold_172-1491911889:106597..109975Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1510915933:106597..109975TCONS_00050453-exon-scaffold_172-1510915933:106597..109975Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1575043694:106597..109975TCONS_00050453-exon-scaffold_172-1575043694:106597..109975Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1491911889:110178..110311TCONS_00050453-exon-scaffold_172-1491911889:110178..110311Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1510915933:110178..110311TCONS_00050453-exon-scaffold_172-1510915933:110178..110311Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1575043694:110178..110311TCONS_00050453-exon-scaffold_172-1575043694:110178..110311Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1491911889:110978..111046TCONS_00050453-exon-scaffold_172-1491911889:110978..111046Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1510915933:110978..111046TCONS_00050453-exon-scaffold_172-1510915933:110978..111046Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1575043694:110978..111046TCONS_00050453-exon-scaffold_172-1575043694:110978..111046Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1491911889:111522..111626TCONS_00050453-exon-scaffold_172-1491911889:111522..111626Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1510915933:111522..111626TCONS_00050453-exon-scaffold_172-1510915933:111522..111626Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1575043694:111522..111626TCONS_00050453-exon-scaffold_172-1575043694:111522..111626Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1491911889:112996..113091TCONS_00050453-exon-scaffold_172-1491911889:112996..113091Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1510915933:112996..113091TCONS_00050453-exon-scaffold_172-1510915933:112996..113091Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1575043694:112996..113091TCONS_00050453-exon-scaffold_172-1575043694:112996..113091Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1491911889:113568..113719TCONS_00050453-exon-scaffold_172-1491911889:113568..113719Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1510915933:113568..113719TCONS_00050453-exon-scaffold_172-1510915933:113568..113719Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1575043694:113568..113719TCONS_00050453-exon-scaffold_172-1575043694:113568..113719Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1491911889:113950..114047TCONS_00050453-exon-scaffold_172-1491911889:113950..114047Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1510915933:113950..114047TCONS_00050453-exon-scaffold_172-1510915933:113950..114047Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1575043694:113950..114047TCONS_00050453-exon-scaffold_172-1575043694:113950..114047Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1491911889:114415..114545TCONS_00050453-exon-scaffold_172-1491911889:114415..114545Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1510915933:114415..114545TCONS_00050453-exon-scaffold_172-1510915933:114415..114545Clytia hemisphaericaexon
TCONS_00050453-exon-scaffold_172-1575043694:114415..114545TCONS_00050453-exon-scaffold_172-1575043694:114415..114545Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_172supercontigscaffold_172:106597..114545 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.39617	1.48101	1.02297	1.09936	1.60642	0.846761	0.635037	1.42166	0.594363	0.626144	0.911656	0.814829	0.79622	1.07939	0.497181	0.45595	0.717205	0.476198	0.680403	0.524225	1.59556	1.25922	0.822291	0.762882	0.507264	0.801966	0.668651	0.46522	0.633807	0.59637
Blast
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BLAST of TCONS_00050453 vs. Swiss-Prot (Human)
Match: WDR33 (pre-mRNA 3' end processing protein WDR33 OS=Homo sapiens GN=WDR33 PE=1 SV=2)

HSP 1 Score: 374.4 bits (960), Expect = 8.770e-108
Identity = 164/257 (63.81%), Postives = 203/257 (78.99%), Query Frame = 1 
Query: 3394 RPNTQVQTQTAPAEYDGKRMRRSIQRRTVDYNASTIQLLKHRLYKRSILQKPIVQCDPLYYTDIVQPRSLQHNPVNSVTSRFVRASTNKVRCPVFTVAWTPEGRRVLTGTSSGEFTLWNGLTFNFETILQAHDSAVRAMEWSHNDMWLLSGDHNGIIKYWQSNMNNVKLIQAHNDPIRGLSFCPTDNKFVTCSDDGLLKVWDFYRCLEERVLRGHGADVKCVGWHPSKSLVASGSKDSQQPLKLWDPRSASSLATMY 4164
            RP+   Q       +DGKRMR+++ R+T+DYN S I+ L++R+++R       +Q D  YY D+V P  + +NP+N+VT++FVR STNKV+CPVF V WTPEGRR++TG SSGEFTLWNGLTFNFETILQAHDS VRAM WSHNDMW+L+ DH G +KYWQSNMNNVK+ QAH + IR  SF PTDNKF TCSDDG +++WDF RC EER+LRGHGADVKCV WHP+K LV SGSKDSQQP+K WDP++  SLAT++
Sbjct:   29 RPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLH 285
The following BLAST results are available for this feature:
BLAST of TCONS_00050453 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR338.770e-10863.81pre-mRNA 3' end processing protein WDR33 OS=Homo s... [more]
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