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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050451 ID=TCONS_00050451|Name=TCONS_00050451|organism=Clytia hemisphaerica|type=transcript|length=2545bp
AGATTTCTGATCTAGGAAGTATAACGTTGGGATGGGAGAAGTTAATAAAA
TATAGTGAaaggttttgagaaaatcatATTCTAGTTGCCGTTTGATAATA
AAATGGGTTCAGTTATTTATGCGCTTGTTGCTACAGTCCTTCACTTCATA
TGTTTTTATGTGACAATTATATCGAAAGATAAATGTAAAAGCCGATGTTT
TTACAAATGTTTTCGTGTGATTTTCATCGTTCATTTGGCGACAAATGGAA
TTGTATTTCTGATCATTTTTCTGTTCTTTCCATCCCAACCACCAACATTT
TACGTCATTTCATTACCGTTGATGTTTGTATTGCTCATGGTTCGAAGTTT
ATACCAATATAATCGTGAAAAGCAAGCTCAATCATTCGTCTTAGAAGAAG
TCGCAACTTTTTTAGATGAAAATTTACTAAAGGAACCGAAAGTGATTGTT
CAATGCGAGGCTGCGGAACCTCGAACTTTGTGCTGCAGAAAACAACGCGT
TATTTGGAGCAATCTGAAAGAGTTCGAATTTCAACATTGGATCGATGTGA
CTGAACAACATTTGGTGAAATCACAAATCGAAGAAGCGATTTTTGgtgaa
ttgaaaattgaattcgAATTTGATGACGAAGAAACGAAAGAGTCATATGA
ACAACACGTTCAGAATCTTGTAAAAGAAGCAAAGCAACATTCTCCACACG
CTCAAGTCAACGTCAAACAAATTTTCCAAGTCGGTGAAAAAGATATCAAA
ACCTACAGACGGTCGTTTTATGGAAAGAAGGCTCTTTTTGGAGAACCATT
CGTTTGCCTTCAATGCATTTTCCCTCAAATCGAACTTTcgttcaaaatat
tgaaatggttTCTTGAAAGGGTTGGCTTCAGAAGTTTATTGATTAAAGAC
GTGGTGATTAAAAAAGTGATATCAAACAGAAATATTGAAGCTGTATAGCA
TGTCAATGTCCACTGCACTAACAGTATGTCCCATAAAAGATACTGAGGTT
CCAGGGGAATTGTTTTCCTTATAATAActtgatttattttcttcaaattt
gatCTTCTGAGAAGAGATGTGCAAACGAACAGGCACCAGGCAAGTGGGAA
GCTCATCCCAACAAGCCGATGAGCAAGTTATTATCTTTTatataagagtg
atatcgtttgcttactcatcaattttaattcacaagctttttcatattga
catgaattgacacgaatgtggagcaagattggtcagaaggaggaaaagag
aaatattttttttcttatataagcagacactgtcctgatgtGAAATATgc
gtctgatatgaaacgggaacacttatgtaaaaatataacCTTTAAAGTCA
GTATAATCACCATTTTTTGTGTTACgttaaacaaataaacaaataaaacg
TTTCTCCGTACCTTCGTATATCTCTAGTTGAGCCAAGAACAACTCTTGTC
AAATATTATTCAGCGTGATTTTCCTTCCACGGACATGAACACAAGATCTT
TCGATGATACATCAACTCATACCAAAATTTATATAtcaattctttttcat
ttttattcattttctaaACAGAGGAATTGATGATATTAAAACAAATGCAA
CCAAAATAATCTTCTTGTCATAGATACACTTTAGAGGCCTTTTAGATCAG
ACTTCAGTTAGTACACTTTAAGAGGCTTTGTCATTTTTTGTAATGTTTTC
AATACTGCAGTAGTAAAATGCAATGAGTAGGTAAGTTATTTTAATCTCTT
TAAATTAAATGTACTGTATGTGGTAAAATGTAAAGACATTTTGTAAGAAT
ATGAAATTATGTTAGTAGTTCTGTCCAAACCACGATAGTACAATTATTTC
TCCTTGATTTTAAGCTCTAtagttcaaaatttttcgaattttttggcAAG
GTGGTTCTCTCCTCATAAACCCTAAATGTAGTACACCATACGGTGAAAAG
CCCTGCTCCTACTTTACAAATCTCAAGTTTAACTCGACTTAACTCGAACT
CATCCATATAACTCTTATACTTGACTTTTATGCAGCACTTATAATTTCCT
acgtttttaaaaaagtttttgttttcagaTGTCCCATTATAATGTCATTT
TTTCCGGACAATTTTACACAGTATGCAGTTGCTTCGTGCTAAAGAATCAA
CGTCATTTTCAGATGTTTTTTCATACCAGGAAGTGAAGGGGTAATTTTTG
TAATACAACGACACCATCATCCAGTTTAGTCCACCTTTCATTTCAATCAG
CCAAAGAGTGAGGAATCAACAATTTTGAGTGAACAAGCGATctgtttgaa
aagtttttccgacCATTTAGAAGCATCGTTTGGAGTTGTGTTGTTACCAC
TGCTACTACTTTTTGTACTGTAAAAAAACGGGGGAAAAAAAGTTGACAAT
AACGTTGGATGATGGGTTCTGAAATGATCGAAATGACCTATATTCTACTA
TTTTCGTATCCCAGGCATCAGTCTAGGAAAgagtaaagatttttttaatt
atccAGTCTATCTACAGTTTGGATACAGACACACATTTAGGCAAG Run BLAST on NCBI protein sequence of TCONS_00050451-protein >TCONS_00050451-protein ID=TCONS_00050451-protein|Name=TCONS_00050451-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
MGSVIYALVATVLHFICFYVTIISKDKCKSRCFYKCFRVIFIVHLATNGI
VFLIIFLFFPSQPPTFYVISLPLMFVLLMVRSLYQYNREKQAQSFVLEEV
ATFLDENLLKEPKVIVQCEAAEPRTLCCRKQRVIWSNLKEFEFQHWIDVT
EQHLVKSQIEEAIFGELKIEFEFDDEETKESYEQHVQNLVKEAKQHSPHA
QVNVKQIFQVGEKDIKTYRRSFYGKKALFGEPFVCLQCIFPQIELSFKIL
KWFLERVGFRSLLIKDVVIKKVISNRNIEAV Run BLAST on NCBI transcript from alignment at scaffold_172:78633..81645+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050451 ID=TCONS_00050451|Name=TCONS_00050451|organism=Clytia hemisphaerica|type=transcript|length=3013bp|location=Sequence derived from alignment at scaffold_172:78633..81645+ (Clytia hemisphaerica)
AGATTTCTGATCTAGGAAGTATAACGTTGGGATGGGAGAAGTTAATAAAA
TATAGTGAaaggttttgagaaaatcatATTCTAGTTGCCGTTTGATAATA
AAATGGGTTCAGTTATTTATGCGCTTGTTGCTACAGTCCTTCACTTCATA
TGTTTTTATGTGACAATTATATCGAAAGATAAATGTAAAAGCCGATGTTT
TTACAAATGTTTTCGTGTGATTTTCATCGTTCGTAAGTTTTCGAAATACC
TCaatctttttttattcatttgtatAATCTTTAACATAAGACCTCAACCT
TTGTAATACAGTGCCGTAGAAAGCATTTTGATATTAGGGGGCATAAGTTC
AGTGAGGGCCAACCATTTCCGCgaaggggaaaattttgaaatctagagct
ctaaattggctaaaaacacACTCAACAAACTGAAATAATTCGAATAAAGG
CAAAATTTTAAGGTAAAATACTCCATTTTACGAAAAAATCACTcttaaaa
attattgggggcgGGGGGCTAAGCACCCCCTAGCCCCCCCGGTAGCTACT
GCGCTGTAATAAGCTACTGTAAGAATTATCCATAGCGTGTCTCAACAACT
GTACGGTGTACCCAAGaaagaaactaaaataaaactttCTCAAAATCTAC
ATACTCTCCTTCTTTCACTTTCTATTTCGGACGTTCTTTTACAATTTTAG
ATTTGGCGACAAATGGAATTGTATTTCTGATCATTTTTCTGTTCTTTCCA
TCCCAACCACCAACATTTTACGTCATTTCATTACCGTTGATGTTTGTATT
GCTCATGGTTCGAAGTTTATACCAATATAATCGTGAAAAGCAAGCTCAAT
CATTCGTCTTAGAAGAAGTCGCAACTTTTTTAGATGAAAATTTACTAAAG
GAACCGAAAGTGATTGTTCAATGCGAGGCTGCGGAACCTCGAACTTTGTG
CTGCAGAAAACAACGCGTTATTTGGAGCAATCTGAAAGAGTTCGAATTTC
AACATTGGATCGATGTGACTGAACAACATTTGGTGAAATCACAAATCGAA
GAAGCGATTTTTGgtgaattgaaaattgaattcgAATTTGATGACGAAGA
AACGAAAGAGTCATATGAACAACACGTTCAGAATCTTGTAAAAGAAGCAA
AGCAACATTCTCCACACGCTCAAGTCAACGTCAAACAAATTTTCCAAGTC
GGTGAAAAAGATATCAAAACCTACAGACGGTCGTTTTATGGAAAGAAGGC
TCTTTTTGGAGAACCATTCGTTTGCCTTCAATGCATTTTCCCTCAAATCG
AACTTTcgttcaaaatattgaaatggttTCTTGAAAGGGTTGGCTTCAGA
AGTTTATTGATTAAAGACGTGGTGATTAAAAAAGTGATATCAAACAGAAA
TATTGAAGCTGTATAGCATGTCAATGTCCACTGCACTAACAGTATGTCCC
ATAAAAGATACTGAGGTTCCAGGGGAATTGTTTTCCTTATAATAActtga
tttattttcttcaaatttgatCTTCTGAGAAGAGATGTGCAAACGAACAG
GCACCAGGCAAGTGGGAAGCTCATCCCAACAAGCCGATGAGCAAGTTATT
ATCTTTTatataagagtgatatcgtttgcttactcatcaattttaattca
caagctttttcatattgacatgaattgacacgaatgtggagcaagattgg
tcagaaggaggaaaagagaaatattttttttcttatataagcagacactg
tcctgatgtGAAATATgcgtctgatatgaaacgggaacacttatgtaaaa
atataacCTTTAAAGTCAGTATAATCACCATTTTTTGTGTTACgttaaac
aaataaacaaataaaacgTTTCTCCGTACCTTCGTATATCTCTAGTTGAG
CCAAGAACAACTCTTGTCAAATATTATTCAGCGTGATTTTCCTTCCACGG
ACATGAACACAAGATCTTTCGATGATACATCAACTCATACCAAAATTTAT
ATAtcaattctttttcatttttattcattttctaaACAGAGGAATTGATG
ATATTAAAACAAATGCAACCAAAATAATCTTCTTGTCATAGATACACTTT
AGAGGCCTTTTAGATCAGACTTCAGTTAGTACACTTTAAGAGGCTTTGTC
ATTTTTTGTAATGTTTTCAATACTGCAGTAGTAAAATGCAATGAGTAGGT
AAGTTATTTTAATCTCTTTAAATTAAATGTACTGTATGTGGTAAAATGTA
AAGACATTTTGTAAGAATATGAAATTATGTTAGTAGTTCTGTCCAAACCA
CGATAGTACAATTATTTCTCCTTGATTTTAAGCTCTAtagttcaaaattt
ttcgaattttttggcAAGGTGGTTCTCTCCTCATAAACCCTAAATGTAGT
ACACCATACGGTGAAAAGCCCTGCTCCTACTTTACAAATCTCAAGTTTAA
CTCGACTTAACTCGAACTCATCCATATAACTCTTATACTTGACTTTTATG
CAGCACTTATAATTTCCTacgtttttaaaaaagtttttgttttcagaTGT
CCCATTATAATGTCATTTTTTCCGGACAATTTTACACAGTATGCAGTTGC
TTCGTGCTAAAGAATCAACGTCATTTTCAGATGTTTTTTCATACCAGGAA
GTGAAGGGGTAATTTTTGTAATACAACGACACCATCATCCAGTTTAGTCC
ACCTTTCATTTCAATCAGCCAAAGAGTGAGGAATCAACAATTTTGAGTGA
ACAAGCGATctgtttgaaaagtttttccgacCATTTAGAAGCATCGTTTG
GAGTTGTGTTGTTACCACTGCTACTACTTTTTGTACTGTAAAAAAACGGG
GGAAAAAAAGTTGACAATAACGTTGGATGATGGGTTCTGAAATGATCGAA
ATGACCTATATTCTACTATTTTCGTATCCCAGGCATCAGTCTAGGAAAga
gtaaagatttttttaattatccAGTCTATCTACAGTTTGGATACAGACAC
ACATTTAGGCAAG Coding sequence (CDS) from alignment at scaffold_172:78633..81645+ >TCONS_00050451 ID=TCONS_00050451|Name=TCONS_00050451|organism=Clytia hemisphaerica|type=CDS|length=1692bp|location=Sequence derived from alignment at scaffold_172:78633..81645+ (Clytia hemisphaerica)
ATGGGTTCAGTTATTTATGCGCTTGTTGCTACAGTCCTTCACTTCATATG
TTTTTATGTGACAATTATATCGAAAGATAAATGTAAAAGCCGATGTTTTT
ACAAATGTTTTCGTGTGATTTTCATCGTTCATTTGGCGACAAATGGAATT
GTATTTCTGATCATTTTTCTGTTCTTTCCATCCCAACCACCAACATTTTA
CGTCATTTCATTACCGTTGATGTTTGTATTGCTCATGGTTCGAAGTTTAT
ACCAATATAATCGTGAAAAGCAAGCTCAATCATTCGTCTTAGAAGAAGTC
GCAACTTTTTTAGATGAAAATTTACTAAAGGAACCGAAAGTGATTGTTCA
ATGCGAGGCTGCGGAACCTCGAACTTTGTGCTGCAGAAAACAACGCGTTA
TTTGGAGCAATCTGAAAGAGTTCGAATTTCAACATTGGATCGATGTGACT
GAACAACATTTGGTGAAATCACAAATCGAAGAAGCGATTTTTGgtgaatt
gaaaattgaattcgAATTTGATGACGAAGAAACGAAAGAGTCATATGAAC
AACACGTTCAGAATCTTGTAAAAGAAGCAAAGCAACATTCTCCACACGCT
CAAGTCAACGTCAAACAAATTTTCCAAGTCGGTGAAAAAGATATCAAAAC
CTACAGACGGTCGTTTTATGGAAAGAAGGCTCTTTTTGGAGAACCATTCG
TTTGCCTTCAATGCATTTTCCCTCAAATCGAACTTTcgttcaaaatattg
aaatggttTCTTGAAAGGGTTGGCTTCAGAAGTTTATTGATTAAAGACGT
GGTGATTAAAAAAGTGATATCAAACAGAAATATTGAAGCTGTATAGATGG
GTTCAGTTATTTATGCGCTTGTTGCTACAGTCCTTCACTTCATATGTTTT
TATGTGACAATTATATCGAAAGATAAATGTAAAAGCCGATGTTTTTACAA
ATGTTTTCGTGTGATTTTCATCGTTCATTTGGCGACAAATGGAATTGTAT
TTCTGATCATTTTTCTGTTCTTTCCATCCCAACCACCAACATTTTACGTC
ATTTCATTACCGTTGATGTTTGTATTGCTCATGGTTCGAAGTTTATACCA
ATATAATCGTGAAAAGCAAGCTCAATCATTCGTCTTAGAAGAAGTCGCAA
CTTTTTTAGATGAAAATTTACTAAAGGAACCGAAAGTGATTGTTCAATGC
GAGGCTGCGGAACCTCGAACTTTGTGCTGCAGAAAACAACGCGTTATTTG
GAGCAATCTGAAAGAGTTCGAATTTCAACATTGGATCGATGTGACTGAAC
AACATTTGGTGAAATCACAAATCGAAGAAGCGATTTTTGgtgaattgaaa
attgaattcgAATTTGATGACGAAGAAACGAAAGAGTCATATGAACAACA
CGTTCAGAATCTTGTAAAAGAAGCAAAGCAACATTCTCCACACGCTCAAG
TCAACGTCAAACAAATTTTCCAAGTCGGTGAAAAAGATATCAAAACCTAC
AGACGGTCGTTTTATGGAAAGAAGGCTCTTTTTGGAGAACCATTCGTTTG
CCTTCAATGCATTTTCCCTCAAATCGAACTTTcgttcaaaatattgaaat
ggttTCTTGAAAGGGTTGGCTTCAGAAGTTTATTGATTAAAGACGTGGTG
ATTAAAAAAGTGATATCAAACAGAAATATTGAAGCTGTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050451-exon-scaffold_172-1491911889:78633..78864 | TCONS_00050451-exon-scaffold_172-1491911889:78633..78864 | Clytia hemisphaerica | exon |
| TCONS_00050451-exon-scaffold_172-1510915933:78633..78864 | TCONS_00050451-exon-scaffold_172-1510915933:78633..78864 | Clytia hemisphaerica | exon |
| TCONS_00050451-exon-scaffold_172-1575043694:78633..78864 | TCONS_00050451-exon-scaffold_172-1575043694:78633..78864 | Clytia hemisphaerica | exon |
| TCONS_00050451-exon-scaffold_172-1491911889:79333..81645 | TCONS_00050451-exon-scaffold_172-1491911889:79333..81645 | Clytia hemisphaerica | exon |
| TCONS_00050451-exon-scaffold_172-1510915933:79333..81645 | TCONS_00050451-exon-scaffold_172-1510915933:79333..81645 | Clytia hemisphaerica | exon |
| TCONS_00050451-exon-scaffold_172-1575043694:79333..81645 | TCONS_00050451-exon-scaffold_172-1575043694:79333..81645 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_172 | supercontig | scaffold_172:78633..81645 + |
Blast
The following BLAST results are available for this feature:
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