TCONS_00050444 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050444
Unique NameTCONS_00050444
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050444 ID=TCONS_00050444|Name=TCONS_00050444|organism=Clytia hemisphaerica|type=transcript|length=407bp
GGTAATATTAAATTGAGAGTCGATTGCTCGATCTTGTACCATTGAGCTAG
GCTGCTCATTAGGATCATGGTATACAAAATTTATGTCCGAGATCATGAGG
ACGTTGATCTCATCAAATATATATGGCAACTGTCATAGGATAGTAGCCAC
TCCAATACAGCTTGTCTATTTCTTGTTATAGCTGTCATGTTAGCAAATAG
TTGCTATTCTACCCGTTCAAGATGAAAGGTctatgtttggaaattttgGC
CAAATGAACTTAGGGAGGAAATGATATATAAGTAATTCACCTTAATGAGC
CTCCGTGAGCCTCATTGACCCAATCAAGACTGGGTGGgaggaaagaaaaa
tgttattatgcattatgcatatccatataattacataaagattgaaataa
aattgcN
Run BLAST on NCBI

transcript from alignment at scaffold_171:182406..182812

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050444 ID=TCONS_00050444|Name=TCONS_00050444|organism=Clytia hemisphaerica|type=transcript|length=407bp|location=Sequence derived from alignment at scaffold_171:182406..182812 (Clytia hemisphaerica)
Ngcaattttatttcaatctttatgtaattatatggatatgcataatgcat
aataacatttttctttcctcCCACCCAGTCTTGATTGGGTCAATGAGGCT
CACGGAGGCTCATTAAGGTGAATTACTTATATATCATTTCCTCCCTAAGT
TCATTTGGCcaaaatttccaaacatagACCTTTCATCTTGAACGGGTAGA
ATAGCAACTATTTGCTAACATGACAGCTATAACAAGAAATAGACAAGCTG
TATTGGAGTGGCTACTATCCTATGACAGTTGCCATATATATTTGATGAGA
TCAACGTCCTCATGATCTCGGACATAAATTTTGTATACCATGATCCTAAT
GAGCAGCCTAGCTCAATGGTACAAGATCGAGCAATCGACTCTCAATTTAA
TATTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031946XLOC_031946Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050444-exon-scaffold_171-1491911889:182406..182812TCONS_00050444-exon-scaffold_171-1491911889:182406..182812Clytia hemisphaericaexon
TCONS_00050444-exon-scaffold_171-1510915933:182406..182812TCONS_00050444-exon-scaffold_171-1510915933:182406..182812Clytia hemisphaericaexon
TCONS_00050444-exon-scaffold_171-1575043694:182406..182812TCONS_00050444-exon-scaffold_171-1575043694:182406..182812Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_171supercontigscaffold_171:182406..182812 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.13861	1.13777	1.1429	1.17666	2.98646	1.50322	3.02987	3.02508	1.27695	0.925763	2.33758	2.31861	1.64734	2.28667	0.593384	0.915411	0.584871	0.629643	0.25316	0.77859	1.00222	1.51148	0.205445	0	4.89878	3.39709	1.70776	1.04035	0.633355	0.483255
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050444 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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