|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050426 ID=TCONS_00050426|Name=TCONS_00050426|organism=Clytia hemisphaerica|type=transcript|length=705bp
CGATCTAAATGGATGTATGAAATTGGCGAAAGACGTCCTCATTGGGTCAG
GAATCAATTTATATACATTCCCAAGAAGTAAAGAACCGATTCATTTAATG
ATAATGTATACTGATGTTGAAATGAAGGACATTGTACCAAAGCCATTTAT
CCAACAATGTCAGGAGGCAAGAAAGAAATGGCATGTTAGTCAAAAGCAGA
TAATTCCAAAGTCAAACCATCCCATcaagaaacatAAACTATTATGTGAA
TCATACAAATATTTCAACGAACTTATCGAGAAATATTGGGACAAAAATAA
TATCGATATGAACAAATCATTGGCTGTAAGTAGGAAGAACAAACAaagaa
atgacaaaagaaaaataaagaagaaaagacAATCAGCAAACACAGATGAT
CCTAACGTAGTTTTGGTCAATGAAGCTGAGATCATTGTTATACACGAAGG
TGTTGGAGAGAGCGCCAGTGAGGGCGTTAGCGAAGGAGAAGAAAGCGAAC
AAGAAAATGGAGGTCTCTTctccaaatatttttaaaagctgattttcttt
tctttctttttttgaaaattcgttatttattttgttatctATTTATTTTC
AAGTACCGTGTTACTTGAATAAACGCCCTCTCGAaaaaacgcccctccta
aaatccttaaaatttggtaaacgcccggggcgtttattctGAAAGTAATA
CGATA Run BLAST on NCBI protein sequence of TCONS_00050426-protein >TCONS_00050426-protein ID=TCONS_00050426-protein|Name=TCONS_00050426-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
DLNGCMKLAKDVLIGSGINLYTFPRSKEPIHLMIMYTDVEMKDIVPKPFI
QQCQEARKKWHVSQKQIIPKSNHPIKKHKLLCESYKYFNELIEKYWDKNN
IDMNKSLAVSRKNKQRNDKRKIKKKRQSANTDDPNVVLVNEAEIIVIHEG
VGESASEGVSEGEESEQENGGLFSKYF Run BLAST on NCBI transcript from alignment at scaffold_171:19479..20486- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050426 ID=TCONS_00050426|Name=TCONS_00050426|organism=Clytia hemisphaerica|type=transcript|length=1008bp|location=Sequence derived from alignment at scaffold_171:19479..20486- (Clytia hemisphaerica)
CGATCTAAATGGATGTATGAAATTGGCGAAAGACGTCCTCATTGGGTCAG
GAATCAATTTATATACATTCCCAAGAAGTAAAGAACCGATTCATTTAATG
ATAATGTATACTGATGTTGAAATGAAGGACATTGTACCAAAGCCATTTAT
CCAACAATGTCAGGAGGCAAGAAAGAAATGGCATGTTAGTCAAAAGCAGA
TAATTCCAAAGTCAAACCATCCCATCAAGAAACATGTAAGAAAACTTTTT
CTTTTTAATTAAAAATTTTGGGAATGAGGTCTAACTTTTTATTGCTAAAC
GGAATTTCATTTTCAGCCTCAATTTATTTACTCTAAATTTACAGTAGACA
CCCCCGAAAAGCAGACAAATTGTCGGCAGAAAGTTTTTTTTTTGGGATAA
TTTTTGAATGTTCCACCCAGCACATTCTTCACCCGTTCCACTCTCCCTCA
CAGCTACAAAAGCGAAATGGGAACCTCCACCCGGAATATTACAACCTCTC
TCCCCCAATTTAAATTCTTGATTTTGATCTTTTTACAGAAACTATTATGT
GAATCATACAAATATTTCAACGAACTTATCGAGAAATATTGGGACAAAAA
TAATATCGATATGAACAAATCATTGGCTGTAAGTAGGAAGAACAAACAAA
GAAATGACAAAAGAAAAATAAAGAAGAAAAGACAATCAGCAAACACAGAT
GATCCTAACGTAGTTTTGGTCAATGAAGCTGAGATCATTGTTATACACGA
AGGTGTTGGAGAGAGCGCCAGTGAGGGCGTTAGCGAAGGAGAAGAAAGCG
AACAAGAAAATGGAGGTCTCTTCTCCAAATATTTTTAAAAGCTGATTTTC
TTTTCTTTCTTTTTTTGAAAATTCGTTATTTATTTTGTTATCTATTTATT
TTCAAGTACCGTGTTACTTGAATAAACGCCCTCTCGAAAAAACGCCCCTC
CTAAAATCCTTAAAATTTGGTAAACGCCCGGGGCGTTTATTCTGAAAGTA
ATACGATA Coding sequence (CDS) from alignment at scaffold_171:19479..20486- >TCONS_00050426 ID=TCONS_00050426|Name=TCONS_00050426|organism=Clytia hemisphaerica|type=CDS|length=1068bp|location=Sequence derived from alignment at scaffold_171:19479..20486- (Clytia hemisphaerica)
AAACTATTATGTGAATCATACAAATATTTCAACGAACTTATCGAGAAATA
TTGGGACAAAAATAATATCGATATGAACAAATCATTGGCTGTAAGTAGGA
AGAACAAACAAAGAAATGACAAAAGAAAAATAAAGAAGAAAAGACAATCA
GCAAACACAGATGATCCTAACGTAGTTTTGGTCAATGAAGCTGAGATCAT
TGTTATACACGAAGGTGTTGGAGAGAGCGCCAGTGAGGGCGTTAGCGAAG
GAGAAGAAAGCGAACAAGAAAATGGAGGTCTCTTCTCCAAATATTTTTAA
GATCTAAATGGATGTATGAAATTGGCGAAAGACGTCCTCATTGGGTCAGG
AATCAATTTATATACATTCCCAAGAAGTAAAGAACCGATTCATTTAATGA
TAATGTATACTGATGTTGAAATGAAGGACATTGTACCAAAGCCATTTATC
CAACAATGTCAGGAGGCAAGAAAGAAATGGCATGTTAGTCAAAAGCAGAT
AATTCCAAAGTCAAACCATCCCATCAAGAAACATAAACTATTATGTGAAT
CATACAAATATTTCAACGAACTTATCGAGAAATATTGGGACAAAAATAAT
ATCGATATGAACAAATCATTGGCTGTAAGTAGGAAGAACAAACAAAGAAA
TGACAAAAGAAAAATAAAGAAGAAAAGACAATCAGCAAACACAGATGATC
CTAACGTAGTTTTGGTCAATGAAGCTGAGATCATTGTTATACACGAAGGT
GTTGGAGAGAGCGCCAGTGAGGGCGTTAGCGAAGGAGAAGAAAGCGAACA
AGAAAATGGAGGTCTCTTCTCCAAATATTTTTAAGATCTAAATGGATGTA
TGAAATTGGCGAAAGACGTCCTCATTGGGTCAGGAATCAATTTATATACA
TTCCCAAGAAGTAAAGAACCGATTCATTTAATGATAATGTATACTGATGT
TGAAATGAAGGACATTGTACCAAAGCCATTTATCCAACAATGTCAGGAGG
CAAGAAAGAAATGGCATGTTAGTCAAAAGCAGATAATTCCAAAGTCAAAC
CATCCCATCAAGAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050426-exon-scaffold_171-1575043694:20252..20486 | TCONS_00050426-exon-scaffold_171-1575043694:20252..20486 | Clytia hemisphaerica | exon |
| TCONS_00050426-exon-scaffold_171-1575043694:19479..19948 | TCONS_00050426-exon-scaffold_171-1575043694:19479..19948 | Clytia hemisphaerica | exon |
| TCONS_00050426-exon-scaffold_171-1510915933:20252..20486 | TCONS_00050426-exon-scaffold_171-1510915933:20252..20486 | Clytia hemisphaerica | exon |
| TCONS_00050426-exon-scaffold_171-1510915933:19479..19948 | TCONS_00050426-exon-scaffold_171-1510915933:19479..19948 | Clytia hemisphaerica | exon |
| TCONS_00050426-exon-scaffold_171-1491911889:20252..20486 | TCONS_00050426-exon-scaffold_171-1491911889:20252..20486 | Clytia hemisphaerica | exon |
| TCONS_00050426-exon-scaffold_171-1491911889:19479..19948 | TCONS_00050426-exon-scaffold_171-1491911889:19479..19948 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_171 | supercontig | scaffold_171:19479..20486 - |
Blast
The following BLAST results are available for this feature:
|
