TCONS_00050411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050411
Unique NameTCONS_00050411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050411 ID=TCONS_00050411|Name=TCONS_00050411|organism=Clytia hemisphaerica|type=transcript|length=669bp
AGGCGCAAGAAACAAAAGCTGGAACGGACAGTATCACACGAAACGACAGC
CACACAATTATTGCACCCTTTGAACAATAACAAAAACAGTACAACAGAAA
TGCAACCAGTTATCGAAAATAGACAAAGAAACttattattgaaaaataaa
caaactcaaCATGAGCTAGATGATGTACAAAGCTGTAGCGATTTATCATC
AACTGGAGGATTCTTATGTTCAGAATCGACACCCCTTCAACCAGTCATTC
GTTCCCAGGCCGTTTGATAGGAGATAATGATCGATATTACATTTCCGCGT
TCACAAAAATGCTCGCGAATCGAGTCAGTTTACCTATAGTGTCGTTGATC
GTAATGAGAAATGCAAGATGTTGTTTTTGTGTCGAAATCCTTGTCAGGTT
CATTAATACATGTAAGGGCGATTTATGTCGGGATTTTTacttttcaaagt
ctctctgCTCACAAAAAGCTTTATAGATACCAATCCGGGTCAGACTTTGA
AAATCATAGAGGTCACAGGCACGACGggagctttttatatctggtacggc
gtatgaggaaatttaagcgatttcaaagcGATTTTTACCAAcgaagagga
aaatttcgggGTTTTATGTGAAAGTCTGGTAAGGCGGCCACCGTACCTGC
TGTCGTGCCTGGGTCACTT
Run BLAST on NCBI

transcript from alignment at scaffold_170:28202..28870

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050411 ID=TCONS_00050411|Name=TCONS_00050411|organism=Clytia hemisphaerica|type=transcript|length=669bp|location=Sequence derived from alignment at scaffold_170:28202..28870 (Clytia hemisphaerica)
AAGTGACCCAGGCACGACAGCAGGTACGGTGGCCGCCTTACCAGACTTTC
ACATAAAACcccgaaattttcctcttcgTTGGTAAAAATCgctttgaaat
cgcttaaatttcctcatacgccgtaccagatataaaaagctccCGTCGTG
CCTGTGACCTCTATGATTTTCAAAGTCTGACCCGGATTGGTATCTATAAA
GCTTTTTGTGAGcagagagactttgaaaagtAAAAATCCCGACATAAATC
GCCCTTACATGTATTAATGAACCTGACAAGGATTTCGACACAAAAACAAC
ATCTTGCATTTCTCATTACGATCAACGACACTATAGGTAAACTGACTCGA
TTCGCGAGCATTTTTGTGAACGCGGAAATGTAATATCGATCATTATCTCC
TATCAAACGGCCTGGGAACGAATGACTGGTTGAAGGGGTGTCGATTCTGA
ACATAAGAATCCTCCAGTTGATGATAAATCGCTACAGCTTTGTACATCAT
CTAGCTCATGttgagtttgtttatttttcaataataaGTTTCTTTGTCTA
TTTTCGATAACTGGTTGCATTTCTGTTGTACTGTTTTTGTTATTGTTCAA
AGGGTGCAATAATTGTGTGGCTGTCGTTTCGTGTGATACTGTCCGTTCCA
GCTTTTGTTTCTTGCGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031921XLOC_031921Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050411-exon-scaffold_170-1491911889:28202..28870TCONS_00050411-exon-scaffold_170-1491911889:28202..28870Clytia hemisphaericaexon
TCONS_00050411-exon-scaffold_170-1510915933:28202..28870TCONS_00050411-exon-scaffold_170-1510915933:28202..28870Clytia hemisphaericaexon
TCONS_00050411-exon-scaffold_170-1575043694:28202..28870TCONS_00050411-exon-scaffold_170-1575043694:28202..28870Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_170supercontigscaffold_170:28202..28870 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.308502	0.225629	1.13523	0.683475	0.936073	0.821886	0.297471	0.928296	1.49482	0.805033	0.625108	1.33549	6.36043	5.96614	10.1165	9.30563	3.70546	4.33207	0.901848	1.63006	6.48753	4.91026	4.50996	4.82378	7.9494	4.06464	0.105754	0	0.171207	0.0872162
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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