|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050383 ID=TCONS_00050383|Name=TCONS_00050383|organism=Clytia hemisphaerica|type=transcript|length=915bpRun BLAST on NCBI protein sequence of TCONS_00050383-protein >TCONS_00050383-protein ID=TCONS_00050383-protein|Name=TCONS_00050383-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp MGIPKDPCGFVCFMVTYSAILYADYCIIIEVLLPTLIDSLWGTFHVVAFNRun BLAST on NCBI transcript from alignment at scaffold_17:730..8856- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050383 ID=TCONS_00050383|Name=TCONS_00050383|organism=Clytia hemisphaerica|type=transcript|length=8127bp|location=Sequence derived from alignment at scaffold_17:730..8856- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_17:730..8856- >TCONS_00050383 ID=TCONS_00050383|Name=TCONS_00050383|organism=Clytia hemisphaerica|type=CDS|length=8190bp|location=Sequence derived from alignment at scaffold_17:730..8856- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00050383 vs. Swiss-Prot (Human)
Match: ZDHC3 (Palmitoyltransferase ZDHHC3 OS=Homo sapiens GN=ZDHHC3 PE=1 SV=2) HSP 1 Score: 158.303 bits (399), Expect = 2.589e-45 Identity = 89/258 (34.50%), Postives = 143/258 (55.43%), Query Frame = 1
Query: 52 KDPCGFVCFMVTYSAILYADYCIIIEVLLPTLIDSLWGTFHVVAFNIFIFLMVLSHIKASFTDPGKVPLPKIAVDFSEAXXXXXXXXXXXTNDEWTVCKYCEMFRPPRAHHCRVCKRCIRKMDHHCPWINNCVGERNQKYFILFLFYTVLSTVYA-VSLGVGTWSYKTNGFTRTQIESRRLHIIVMFVVC---VFFLLYVIWILYEQIYSVFHDTTMVEQVQNTEDMSRSPKSKVALLTEVFGAGSYIKWLLPWNTSN 813
+D CG C +VT+ +LYA++ ++ +L+P+ D ++ + + FN+ FL + SH +A TDPG VP +F E+ + + K C C +P RAHHC VCKRCIRKMDHHCPW+NNCVGE NQKYF+LF Y L +++A + +G +T+ S +I++ ++C + FL++ + Q++S+ D T +EQ++ E+ + K+K + VFG + W P+ T +
Sbjct: 40 RDGCGIACAIVTWFLVLYAEFVVLFVMLIPSR-DYVYSIINGIVFNLLAFLALASHCRAMLTDPGAVPKGNATKEFIESLQLKPGQVVYK-------CPKCCSIKPDRAHHCSVCKRCIRKMDHHCPWVNNCVGENNQKYFVLFTMYIALISLHALIMVGFHFLHCFEEDWTKCSSFSPPTTVILLILLCFEGLLFLIFTSVMFGTQVHSICTDETGIEQLKK-EERRWAKKTKWMNMKAVFGHPFSLGWASPFATPD 288 The following BLAST results are available for this feature:
BLAST of TCONS_00050383 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.