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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050382 ID=TCONS_00050382|Name=TCONS_00050382|organism=Clytia hemisphaerica|type=transcript|length=3391bpRun BLAST on NCBI protein sequence of TCONS_00050382-protein >TCONS_00050382-protein ID=TCONS_00050382-protein|Name=TCONS_00050382-protein|organism=Clytia hemisphaerica|type=polypeptide|length=866bp MAMNNLYGSTMSLDCGGNLKSSFNQSTLSLISVNTTTSSISTKVHDFNTKRun BLAST on NCBI transcript from alignment at scaffold_17:159442..169311+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050382 ID=TCONS_00050382|Name=TCONS_00050382|organism=Clytia hemisphaerica|type=transcript|length=9870bp|location=Sequence derived from alignment at scaffold_17:159442..169311+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_17:159442..169311+ >TCONS_00050382 ID=TCONS_00050382|Name=TCONS_00050382|organism=Clytia hemisphaerica|type=CDS|length=57222bp|location=Sequence derived from alignment at scaffold_17:159442..169311+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050382 vs. Swiss-Prot (Human)
Match: ECT2 (Protein ECT2 OS=Homo sapiens GN=ECT2 PE=1 SV=4) HSP 1 Score: 536.954 bits (1382), Expect = 6.318e-173 Identity = 301/771 (39.04%), Postives = 446/771 (57.85%), Query Frame = 3
Query: 285 YTLVDTDENLEVMSNERRKYFFVCQNFDDERFKTLRRKKCRICGPPLLVYLHSRKRALPDTSRPLFNGSMFGVAVCFTGFASKGNMVNQLADLVHFMGGSVRRDFSGKITHLVANLAQGQKYKNAVNLGKHIMTDGWVLEAWEKRHTSSFKASESSFVNSFNMKPFHGLKISFLGFSPDETEHMQDITLQNDGHFVPVGEDGCTHLVIEESYSLDLTTESVKATFVVKQEWFWASIQLDVCAEENMYSYIDDKGTP----------LGTGSQRRFKRKHCNMXXXXXXXXXXXXFFISNKRQSRDGXXXXXXXXTFDSSMGSPLAMIDSPIVKE--------TKKEISARQQKCLELQHTERNYVTILQTIIKVFKEPLEQSANQRGGALLASEEIKTIFGAIPDLLDVHEKLFASINHLVDNWHEEQLIGKAITDCAEGMMKAYPGFVNYFEFIKETINRCDKERPRFHAFLKLSMTNPDCQRQTLTELLIRPVQRLPSMSLLMDDIFKHTKENNPDHAYVNDARAAVKKVLTFINEDKRKTETQVQMFEILGEIENCPPYLLSAKRSLISKVDLMEVTEGLILKCEHLTMFLFNDCIEIAKKKNRGVNSMTYKSPAIQNIQRGNVQKKSYDHMEFIEARHLKHVVDIKDDTDFKEMFGLIHLSNITQADQLSIFKMVPGTTKAE-WINKVVQRLKSSKATADAENLLMGVEPWELLSDKSDTSQEKERSGSLSKVFKKAKSGITKKVVRALSQNKTPKSHNKSTLRRAM 2540
+ +++ E E + + + FV +F D F L + CR+ GPP+++ + LP + RPL+ SM + +CFTGF K +V +L LVH MGG +R+DF+ K+THLVAN QG+K++ AV+LG IM W+ +AWE+R+ F A+ F N F + PF +SFLGFS +E +M+++T G ++P+G++ CTHLV+EE+ DL E K +VVKQEWFW SIQ+D A E MY Y + TP L T + R KR+ + F KR S + +LS S ++ S + D+P + SAR Q EL TE NYV IL TII++F+ PLE+ QRGG +LA EEIKTIFG+IPD+ DVH K+ + L+ NW E + IG ++ ++K YP FVN+FE KETI +C+K++PRFHAFLK++ P+C RQ+L ELLIRPVQRLPS++LL++D+ KHT + NPD + + A ++K+V+T INEDKRKTE Q Q+F+++ E++ CP LLS+ RSL+ +V+ + + E + E +T+FLFNDC+EIA+K+++ + T++SP Q +++ H+ + +K V+DI++ D F L+ QA+ L F+M E W+ + + + ++ ADAENL+ +P + D R+ S+ KK +KKV RA S +KTP K LRRA+
Sbjct: 107 FVKMESVEEFEGLDSPEFENVFVVTDFQDSVFNDLYKADCRVIGPPVVLNCSQKGEPLPFSCRPLYCTSMMNLVLCFTGFRKKEELV-RLVTLVHHMGGVIRKDFNSKVTHLVANCTQGEKFRVAVSLGTPIMKPEWIYKAWERRNEQDFYAAVDDFRNEFKVPPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVKDLPFEPSKKLYVVKQEWFWGSIQMDARAGETMYLY-EKANTPELKKSVSMLSLNTPNSNR-KRRRLKETLAQLSRETDVSPFPPRKRPSAEHSLSIGSLLDISNTPESSINYGDTPKSCTKSSKSSTPVPSKQSARWQVAKELYQTESNYVNILATIIQLFQVPLEEEG-QRGGPILAPEEIKTIFGSIPDIFDVHTKIKDDLEDLIVNWDESKSIGDIFLKYSKDLVKTYPPFVNFFEMSKETIIKCEKQKPRFHAFLKINQAKPECGRQSLVELLIRPVQRLPSVALLLNDLKKHTADENPDKSTLEKAIGSLKEVMTHINEDKRKTEAQKQIFDVVYEVDGCPANLLSSHRSLVQRVETISLGEHPCDRGEQVTLFLFNDCLEIARKRHKVIG--TFRSPHGQTRPPASLK-----HIHLMPLSQIKKVLDIRETEDCHNAFALLVRPPTEQANVLLSFQMTSDELPKENWLKMLCRHVANTICKADAENLIYTADPESFEVNTKDMDSTLSRA---SRAIKKT----SKKVTRAFSFSKTP----KRALRRAL 855 The following BLAST results are available for this feature:
BLAST of TCONS_00050382 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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