TCONS_00050379 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050379
Unique NameTCONS_00050379
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1862

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050379 ID=TCONS_00050379|Name=TCONS_00050379|organism=Clytia hemisphaerica|type=transcript|length=1862bp
aaaaaattgtgagtgttcgatataggttcgattaatttttttaattgaat
tttaatCGTTTGACTGGGTTCGCTTAGTTTGaattgtttgattggttcga
caagttcgattgatcggatCTCTGGCATGTtatatgacagaaagtatgat
tgataaacttggtggagttatcaaaacaaatttgttgtcaaagagattta
aagtaagtgaaaatacaggtcAGATATACAACAAGTCCCATGGTCAAGTT
ATTCAAAGCCTTTCAAAGCCTGTCGCACGCGTTCGTTCGCCAAAACGACA
ATTGCTATTGGGTTGCAAAATCTCACAGACTCTAGACTAGACACAAAATA
GCAAAGCAGAAGATTATGAATACAATAAGAACAGATCATACTCACTTATA
CTTTAAGGTGAATAGTAGAAATGTGTCAATCACGAGGTTCAACTTATATA
CCTGCTtgaccttttttgaaatttgagtaGGCTCCATCCAGCtaaacttt
cactttcgttttcggaagTTACTAGACTGCGCTTCTTTTGTAGCGCCTGC
TCCACGATAGAGGCTAAATCTAACGTCACCATAGTAACGTTTGATAATGG
CagagaacaaaaacaaaaaaagtcgGCCATTTGTTCTTCTCAAATTACAG
CGCGAGGACATATCTCGAGTGCGCAGGGGCCTTTTTGggtttttctaact
tttatgggattttaatttcttttgtaaaagtaGGTAGAATGCATCGTGCT
TACCAATCGATAACTCCTGCCAACAATAAACTTTTAAAGCAGAGATGGGA
TATGACAAGATATGATACACATCGGAAAAAGGTTCGTCAGGCAAGCGCAG
TGATCGATAACCATGCCCCCTGTACATATTTGCATCTACActtgaaactt
aaaaaaatgCAGATTGAGGGAGAAAACTTAGCAACTGTGGAAAGAGACAA
TCGAATTTTATTGGAGAAAATGTCACATATCATGAGAACCAAAGGGCGTG
TAGATAATCGCAACTACTACGAACACAAAAGTTTGAATAAAACCAAACGT
CAGCGTGAACTTCTTCGAGTAACACACGAAAATCAGGCTATATTGAAAAG
AATAACATCGAAAGAACCACATTTGAACCATTTACATTGGGAGGAAGAAT
GGAAAGCTAACCAACGATACATGGATAATATCGCAAAATATCCCAAGGAT
TGGTATGAAGCTATCNCTATCCAACGCTATccaacgagcttctaactcct
tctagatccggagatataagcctttaaagttcgaactagcgatttttttt
aaacttaaaaaaatgaccgtggcacttaaagggttaagaaatattcttta
tTCTCTAAAAGATGATAAGCGTTCACAACAATCGTCGTGTCTATACTGTA
ATGTAAGTATAGATAAGTTTCAATCATCGCTGCTCTCGCTCACCAATTGA
CTAAGTTCTGCAGCACTGTACCCCAACAACATCTTCAGATCACAAACAAA
CTGATAAACGAAGCGCTTACCACACACTTTGTGTATCAAGTCGCCATCGT
AGTAATACCTCAAGGCTCGACTCAATTTTTCGTAGTTCATGGAGGGTTTG
TTTTTGCGTTCACCCCATAACTGAGCAACTCGTTCAGGGTCAACCAATTT
GAAAGCACCTTCTTCGCCCACCCACATAATTATGTCTTTCATGTTTTTCT
CTGTTAACAGCTCCAATAAGAATTGCCACAGTTGTATTTGCCCACTGCCC
GGTGATGCTAAAAATGATAGATGAAAGTTTCATAGTAGGTGCTCCACAGA
GTgcagtttttattgaaaaaagtttctcatAACAAAACATTATTCGGTTG
TATGGAAAACTT
Run BLAST on NCBI

transcript from alignment at scaffold_17:84345..88756+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050379 ID=TCONS_00050379|Name=TCONS_00050379|organism=Clytia hemisphaerica|type=transcript|length=4412bp|location=Sequence derived from alignment at scaffold_17:84345..88756+ (Clytia hemisphaerica)
aaaaaattgtgagtgttcgatataggttcgattaatttttttaattgaat
tttaatCGTTTGACTGGGTTCGCTTAGTTTGaattgtttgattggttcga
caagttcgattgatcggatCTCTGGCATGTtatatgacagaaagtatgat
tgataaacttggtggagttatcaaaacaaatttgttgtcaaagagattta
aagtaagtgaaaatacaggtcAGATATACAACAAGTCCCATGGTCAAGTT
ATTCAAAGCCTTTCAAAGCCTGTCGCACGCGTTCGTTCGCCAAAACGACA
ATTGCTATTGGGTTGCAAAATCTCACAGACTCTAGACTAGACACAAAATA
GCAAAGCAGAAGATTATGAATACAATAAGAACAGATCATACTCACTTATA
CTTTAAGGTGAATAGTAGAAATGTGTCAATCACGAGGTTCAACTTATATA
CCTGCTtgaccttttttgaaatttgagtaGGCTCCATCCAGCtaaacttt
cactttcgttttcggaagTTACTAGACTGCGCTTCTTTTGTAGCGCCTGC
TCCACGATAGAGGCTAAATCTAACGTCACCATAGTAACGTTTGATAATGG
CagagaacaaaaacaaaaaaagtcgGCCATTTGTTCTTCTCAAATTACAG
CGCGAGGACATATCTCGAGTGCGCAGGGGCCTTTTTGggtttttctaact
tttatgggattttaatttcttttgtaaaagtaGGTAGAATGCATCGTGCT
TACCAATCGATAACTCCTGCCAACAATAAACTTTTAAAGCAGAGATGGGA
TATGACAAGATATGATACACATCGGAAAAAGGTAAGACGTTGGCATgtgt
tttcttttcaacttttgatatttctttAAGCATCACCAGTGCTTAAAAAT
GTAAAACGCAATAGGTTTTCTGCTGAAGTTTATTAATCGTTATTTTTGTT
GCTCCGTAACGCTTCAGAGGGCTagaattttcgcgaaaaagacTAAAATT
TTCGAATACCTTATTAACTTCAGCGAATAAAATAATGGTTAATTGCTTTC
TTCATTTTCAGGTTCGTCAGGCAAGCGCAGTGATCGATAACCATGCCCCC
TGTACATATTTGCATCTACActtgaaacttaaaaaaatgCAGGTAACTTA
CGTTTAAACCTTTATCATAATTTAGATGAGCAGTACTCCGTTTGGATTAT
TACAGTATGTTTTATAGACTGGACTTTTTTGGAAATCATCTTTATACTCT
TATGGAGGGGCCTTAGTATAGTTATTGATACTGTGTATATGCAACAAATT
GCCGTTCGAATTCTAGATTGAGGGAGAAAACTTAGCAACTGTGGAAAGAG
ACAATCGAATTTTATTGGAGAAAATGTCACATATCATGAGAACCAAAGGG
CGTGTAGATAATCGCAACTACTACGAACACAAAAGTTTGAATAAAACCAA
ACGTCAGCGTGAACTTCTTCGAGTAACACACGAAAATCAGGTAGCGTTAG
AAGCCTTTTATCTTCAAAAGTCTAACTAgctgttgtttttctctttttga
ttAACAGGATTAACTGATTTTTTTGAGTAAAATTATTATCACTAATGTTA
CAATTTATACGAAGGgccattttcttttgaaaatgaacagaattttttta
aaaacgttttgaaTGAAACATTTTCTCCTTTTCTGTTACAGGCTATATTG
AAAAGAATAACATCGAAAGAACCACATTTGAACCATTTACATTGGGTAAG
TAACTGTTATCGTCTAAAAAGTAATGAGGATCAACTAACGCGTCTCGATT
ATTTCGAAATGCATGTAAGAGATATGTGATGATTGGATAAAATTTTAAAT
GGATTTCTCACGTCTCGCGTTTCATTTATTTTGGTTTATGTGAAATAGAT
GCTCACAAACAGAACAAGATTTGAGCGTCTGTTACATTCatcaattcaaa
aataattaattttctttctcCCGATGGAACTGATCCAATTAGATTAGATT
GTCGAGGACATGCTTATTTAAATAGGCTGCCCTTAAATTGCCCtgtgatt
gaaaaaaaactcaCAATGAAATTACAGCTGATCTCCGTAATTTAAAATGA
TTCCTGATTTTAACTCTGTTGGGGCAGAGACAATGAACGGAAATATTTTC
GCGATTCGCGGAAATTTAGTTACCGTGAAGTTGTATATACACTCAAGGTA
CCTTTAAAAGTTTTCTCATGAAAAAGGCTGCTACTTTAGGCgtggtcgaa
aaatcgcgaatttgaggaaaaaatgtttttcgcgagcataaactttcgcg
aatcgttggataaaaataagaatttgtATGAAAATTTCCTTAAAAGTGAA
TATTATTCGATAAGTCCGATAAAAACGGTTGCTCCTCAATTTCAAAAAGG
CATTAAATATGCCGAAAATTTAATATTAATTACGATATTTATTATTGATT
TCCaactttttgagaatttttcacGATAAACTTTCGTGGAttgccctgtt
aagaattttcaaagacatttactttcgcgaaaaaggtcaaaattcgcgaa
aatcgcgaaagttggtacgcctaaagtaagcctcaaataaaaatagattt
tggaAATTGTTGGATTTTctggataaaaaaaattcaagttttaTGAATTT
AGGAGGAAGAATGGAAAGCTAACCAACGATACATGGATAATATCGCAAAA
TATCCCAAGGATTGGTATGAAGCTATCGTTCGAAAGACCAAACCCAAGAA
GAAGAGCACCTCAATGCAAGACAAAGATGATAAATCAGATGAAGAGAATG
ACAACAATGAACATCTACCCTCTATCAACAATTAAAGCCACTTTTTTCTT
AACAAATGaacaattcttttttctaatattttgataaattttgttatctt
tttgtttttaatgaagtaattttatattaatattttatttaacaaaataa
atagATTTAGTTATATGTAAATTGTTTTGACTATACAATAAATGAAAATG
GTTTGactaaaaatctataaaaatttAATATAAAATTGAGTATAAAATGG
TATGAAAATaagtatataaaaataaagatgttgaaatcaaccctttgagt
gccaatgtcgtatatatcagacatgggctatgtaggagggcgaagcccaa
AACATTATTCGGTTGTATGGAAAACTTCTTTCGAACCCGCGGACGGGGAG
cgtggagtaaggtttataacgCACTCTTAACTGAGAAGACAAGTAGttag
agacattcgagttatagaggttggAGTTAAAGTAAAGTTTCCACTATATA
TTAGCTCGTGGCCAGAGCCGAGTTAACTCTCTATAAAATTTCGATGGGTA
AATATAAGCACTTCTACAATCAATCAATGAATAACGGTCGCAANTCGATA
AGTCCGATAAAAACGGTTGCTCCTCAATTTCAAAAAGGCATTAAATATGC
CGAAAATTTAATATTAATTACGATATTTATTATTGATTTCCaactttttg
agaatttttcacGATAAACTTTCGTGGAttgccctgttaagaattttcaa
agacatttactttcgcgaaaaaggtcaaaattcgcgaaaatcgcgaaagt
tggtacgcctaaagtaagcctcaaataaaaatagattttggaAATTGTTG
GATTTTctggataaaaaaaattcaagttttaTGAATTTAGGAGGAAGAAT
GGAAAGCTAACCAACGATACATGGATAATATCGCAAAATATCCCAAGGAT
TGGTATGAAGCTATCNCTATCCAACGCTATccaacgagcttctaactcct
tctagatccggagatataagcctttaaagttcgaactagcgatttttttt
aaacttaaaaaaatgaccgtggcacttaaagggttaagaaatattcttta
tTCTCTAAAAGATGATAAGCGTTCACAACAATCGTCGTGTCTATACTGTA
ATGTAAGTATAGATAAGTTTCAATCATCGCTGCTCTCGCTCACCAATTGA
CTAAGTTCTGCAGCACTGTACCCCAACAACATCTTCAGATCACAAACAAA
CTGATAAACGAAGCGCTTACCACACACTTTGTGTATCAAGTCGCCATCGT
AGTAATACCTCAAGGCTCGACTCAATTTTTCGTAGTTCATGGAGGGTTTG
TTTTTGCGTTCACCCCATAACTGAGCAACTCGTTCAGGGTCAACCAATTT
GAAAGCACCTTCTTCGCCCACCCACATAATTATGTCTTTCATGTTTTTCT
CTGTTAACAGCTCCAATAAGAATTGCCACAGTTGTATTTGCCCACTGCCC
GGTGATGCTAAAAATGATAGATGAAAGTTTCATAGTAGGTGCTCCACAGA
GTgcagtttttattgaaaaaagtttctcatAACAAAACATTATTCGGTTG
TATGGAAAACTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031901XLOC_031901Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050379-exon-scaffold_17-1491911889:84345..85175TCONS_00050379-exon-scaffold_17-1491911889:84345..85175Clytia hemisphaericaexon
TCONS_00050379-exon-scaffold_17-1510915933:84345..85175TCONS_00050379-exon-scaffold_17-1510915933:84345..85175Clytia hemisphaericaexon
TCONS_00050379-exon-scaffold_17-1575043694:84345..85175TCONS_00050379-exon-scaffold_17-1575043694:84345..85175Clytia hemisphaericaexon
TCONS_00050379-exon-scaffold_17-1491911889:85406..85486TCONS_00050379-exon-scaffold_17-1491911889:85406..85486Clytia hemisphaericaexon
TCONS_00050379-exon-scaffold_17-1510915933:85406..85486TCONS_00050379-exon-scaffold_17-1510915933:85406..85486Clytia hemisphaericaexon
TCONS_00050379-exon-scaffold_17-1575043694:85406..85486TCONS_00050379-exon-scaffold_17-1575043694:85406..85486Clytia hemisphaericaexon
TCONS_00050379-exon-scaffold_17-1491911889:85661..85834TCONS_00050379-exon-scaffold_17-1491911889:85661..85834Clytia hemisphaericaexon
TCONS_00050379-exon-scaffold_17-1510915933:85661..85834TCONS_00050379-exon-scaffold_17-1510915933:85661..85834Clytia hemisphaericaexon
TCONS_00050379-exon-scaffold_17-1575043694:85661..85834TCONS_00050379-exon-scaffold_17-1575043694:85661..85834Clytia hemisphaericaexon
TCONS_00050379-exon-scaffold_17-1491911889:86036..86089TCONS_00050379-exon-scaffold_17-1491911889:86036..86089Clytia hemisphaericaexon
TCONS_00050379-exon-scaffold_17-1510915933:86036..86089TCONS_00050379-exon-scaffold_17-1510915933:86036..86089Clytia hemisphaericaexon
TCONS_00050379-exon-scaffold_17-1575043694:86036..86089TCONS_00050379-exon-scaffold_17-1575043694:86036..86089Clytia hemisphaericaexon
TCONS_00050379-exon-scaffold_17-1491911889:88035..88756TCONS_00050379-exon-scaffold_17-1491911889:88035..88756Clytia hemisphaericaexon
TCONS_00050379-exon-scaffold_17-1510915933:88035..88756TCONS_00050379-exon-scaffold_17-1510915933:88035..88756Clytia hemisphaericaexon
TCONS_00050379-exon-scaffold_17-1575043694:88035..88756TCONS_00050379-exon-scaffold_17-1575043694:88035..88756Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:84345..88756 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.189591	0	0	0	0	0	0	0	0	0	0	0.062974	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00050379 vs. Swiss-Prot (Human)
Match: GABPA (GA-binding protein alpha chain OS=Homo sapiens GN=GABPA PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.089e-47
Identity = 83/113 (73.45%), Postives = 97/113 (85.84%), Query Frame = -3 
Query: 1435 ASPGS-----GQIQLWQFLLELLTEKNMKDIIMWVGEEGAFKLVDPERVAQLWGERKNKPSMNYEKLSRALRYYYDGDLIHKVCGKRFVYQFVCDLKMLLGYSAAELSQLVSE 1758
            +SPG+     GQIQLWQFLLELLT+K+ +D I WVG+EG FKL  PE VAQ WG+RKNKP+MNYEKLSRALRYYYDGD+I KV GKRFVY+FVCDLK L+GYSAAEL++LV+E
Sbjct:  308 SSPGNRTGNNGQIQLWQFLLELLTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAELNRLVTE 420
The following BLAST results are available for this feature:
BLAST of TCONS_00050379 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GABPA1.089e-4773.45GA-binding protein alpha chain OS=Homo sapiens GN=... [more]
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