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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050372 ID=TCONS_00050372|Name=TCONS_00050372|organism=Clytia hemisphaerica|type=transcript|length=2853bp
AAGGCATGTTATGTCGAAGTCTTCTAAAAGTCACTGTTTTTGAAATAGCG
AATTATAATTgcaaaagatatttttcaaaattgaaaaacttcttatcagt
attcaaaaatattatcaCCACTACAAAAATATACTACTTGCTTTAcaaat
ttgcacaaaattcaataatttctaTATATCAATAAATATACTACATAATT
GTCCCGATATTCCCGATACAAATATTTTCCGAACTAACCCTACTCCAAGG
GCCATCTAGGTGCATCACAGATTGTTGAGTCCCACCCCGATACCATAGGT
CATACCACCTGTTTTTTTTACCTTACTCGGATTAAAAGAGGCTTTAGCGA
CGAATATTCTTGACATTTTTTCGAtgtaaatttaaaatcaaacgaAATTG
AAATCTACAAGTTATCCAATGATGATATTGAATTTATACCTCTGCCCAAA
ATGTCAATAGGGATGGCGCTCTCTCAATGTATGTGCTGTTGTTAGTGCCC
TTCACTTTTCTTATAGTCAGGATGATTTTAGCCGATCTTTCCAGGGCTAA
TTGGATGTGTGACAAGGCGTGTTCTTATGTAATAAGTTATTCGGGTCTTA
TTGGAAAAAATTCCCTTTTCAGACGATTGAGGTTTTCCATATTTAGAAAG
CTTACTTAAAAAAAATCATGAATTAAATAACTGAAATATAACAACAATAA
AACCCCAAAAATATAACTAAGCTATGTTTATGAATGAAAAATTGTACCAA
AAATATTTCCCTATatgttaaataaataaataaatgaatacaGTGATCTG
TATTGACTGAACACTTAGAGGAGGAAGATGTTAATTTGTTTTTGTGGTCT
ATTCACCGGTCAAACTTACCAAAACAAAATGCAAATTGATCAGCCAACAC
GATATGAATACTATAATATGGCGCTGTAGTGAGGTGAAattcacaaaaga
aaaatacaaacaagGCCATTAAAAAACTgttacaaaagaaagaaagggaG
CTTCAACATACCTCAATCTTTTCATTTCAGCCAAaacaaattaacaaaat
tggcTTTAATCAAATGCTCAAAAATAATAGCAGCGCTTGAAAATCATCcg
aaataaaaatgatgcaTCATgtataaaacaattgaaaaatagCAGACCTC
CTCAAGTGCATGATGATTCATAACATTTCACATTTAGTTGAAATTATTGA
TGGATATTTACTAATTGATCCAAGCATAAGGTAGGAACCCATTATCAGGG
TCGTCCCACATTAGACATTGTTTTTGATGATAATCATCTTCCAAACGGAC
CACATCTCCATCACCGTTAAAAACGATCGTTTGACCAGCCTTCGTTCCTT
CCACCACACCTTCCACCATGAACTGTTTGAACACCCTCCGAATGGTTAAC
ATGAAATTCCGTTCCGATTCTGTCATTTTATGGTCGTCTGCCATTTCATA
ACCGAACAAAGCCATAGCATCGGTGACGTGAGCAGCGTTGGTGATATGGA
TGAGCCCATTCATCAAAGTAAGCGCTCGTTTAGGTTTCCATGCAGACACA
TAACGGTACGTGTTGTTTCGAAGGGCGCTCTTTCTGAAATTTTTGACCAA
TCGGTTGGTAGGACAGGTAACGCGCACATCACTAATTATGGTTTCGTAAA
GAAATTGCGCTGTTACTTTAGAGTCGACGTAAGTGGTGAGGTTTTCATAA
GAAGATGAAATGTTAGCGATGATCAGTGTGCCAAAAGGTTTAGTGTGGTT
AGACAAAAATTCCATCAACACCTCTTTACTCTGAAAGTGTTTGGAAGGAC
CAATGCCTGGCTCCTGTGCTGTCGTTCCAATCAACAGATCAACTCCATGT
TTCAAAGAAGTAAGAACGCTCACATTATTGGCAGGAACAGGTAAAACCAC
TGGATCCACTACTAACAGAGAACCAACAAACAAATCTTTGGtcggaaaat
tttgaagatcctCTTGCGCCCAATTCGGATAGACAGTACCAGGTATGGAA
TCAATAACTTCCTTTGGTGTCAAACTATAAAAACATTCCCGAATTTCTTT
CGCGGTGGTAAAATTTCGGCATCTTGATCGCTCGATAAAAATCCGATTAT
CTTTGGCAGCTACGGTAAAATCTCTTGGAAAATAAGGCGAGCCGCTCATC
GGTATACCACGTTTGAAAAGACCATCCGCTAAAGGTGATGCTGCTAATGC
ATATATAGATGTTCCACCAGAGCTTTGACCGGCTACGGTCACTAAGTCTG
GGTTTCCACCGAATTTCTGAATGTTACTTTGAACCCATTGCAAAGCCATT
ATTTGATCTAATAAGCCATAGTTACCATACGAAATGTCTTTTGCCCAAAA
CTCTTTCAACGTCAAAAAACCGAAAGCGTTCAAGCGGTAATTAACACTAA
CACTAACGACGTTCATTTCAGAGGTGAATCGGGGGTGAGGGTTATACCCT
CTCATGTGAGCGTACCCGTTTATTAAATATCCTCCGTGAATCCACACAAA
GACCGGTAAATTAGCATTCTCATCCAAAGTCGGTGTGTGAATGTGAAGAT
AAAGACAATCTTCAGAAGGTTCTCTCTCCACCGGTGGAAAAGGTGGAGGG
TTGTATTGAATACATAGAGTATTTGAAATGTTGGCGATGTAGATGTCAGA
GAGTTTCTTCTTTGGAACAGGTGGTTTCCAACGGAGCCGTCCAACGGGTG
GTTCAGCAAACGGAATACCTTTGAAACGGTACGACAccttgttgttgttt
gtttctttgaaACCTTGAAATGTACCTGCTTGTGTTTggacgatgacgtc
atcattattcGGGACGTCATCATCAGATGGAGTGCTTAACACAACAGCCA
GTA Run BLAST on NCBI transcript from alignment at scaffold_17:9611..15919+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050372 ID=TCONS_00050372|Name=TCONS_00050372|organism=Clytia hemisphaerica|type=transcript|length=6309bp|location=Sequence derived from alignment at scaffold_17:9611..15919+ (Clytia hemisphaerica)
AAGGCATGTTATGTCGAAGTCTTCTAAAAGTCACTGTTTTTGAAATAGCG
AATTATAATTgcaaaagatatttttcaaaattgaaaaacttcttatcagt
attcaaaaatattatcaCCACTACAAAAATATACTACTTGCTTTAcaaat
ttgcacaaaattcaataatttctaTATATCAATAAATATACTACATAATT
GTCCCGATATTCCCGATACAAATATTTTCCGAACTAACCCTACTCCAAGG
GCCATCTAGGTGCATCACAGATTGTTGAGTCCCACCCCGATACCATAGGT
CATACCACCTGTTTTTTTTACCTTACTCGGATTAAAAGAGGCTTTAGCGA
CGAATATTCTTGACATTTTTTCGAtgtaaatttaaaatcaaacgaAATTG
AAATCTACAAGTTATCCAATGATGATATTGAATTTATACCTCTGCCCAAA
ATGTCAATAGGGATGGCGCTCTCTCAATGTATGTGCTGTTGTTAGTGCCC
TTCACTTTTCTTATAGTCAGGATGATTTTAGCCGATCTTTCCAGGGCTAA
TTGGATGTGTGACAAGGCGTGTTCTTATGTAATAAGTTATTCGGGTCTTA
TTGGAAAAAATTCCCTTTTCAGACGATTGAGGTTTTCCATATTTAGAAAG
CTTACTTAAAAAAAATCATGAATTAAATAACTGAAATATAACAACAATAA
AACCCCAAAAATATAACTAAGCTATGTTTATGAATGAAAAATTGTACCAA
AAATATTTCCCTATatgttaaataaataaataaatgaatacaGTGATCTG
TATTGACTGAACACTTAGAGGAGGAAGATGTTAATTTGTTTTTGTGGTCT
ATTCACCGGTCAAACTTACCAAAACAAAATGCAAATTGATCAGCCAACAC
GATATGAATACTATAATATGGCGCTGTAGTGAGGTGAAattcacaaaaga
aaaatacaaacaagGCCATTAAAAAACTgttacaaaagaaagaaagggaG
CTTCAACATACCTCAATCTTTTCATTTCAGCCAAaacaaattaacaaaat
tggcTTTAATCAAATGCTCAAAAATAATAGCAGCGCTTGAAAATCATCcg
aaataaaaatgatgcaTCATgtataaaacaattgaaaaatagCAGACCTC
CTCAAGTGCATGATGATTCATAACATTTCACATTTAGTTGAAATTATTGA
TGGATATTTACTAATTGATCCAAGCATAAGGTAGGAACCCATTATCAGGG
TCGTCCCACATTAGACATTGTTTTTGATGATAATCATCTTCCAAACGGAC
CACATCTCCATCACCGTTAAAAACGATCGTTTGACCAGCCTTCGTTCCTT
CCACCACACCTTCCACCATGAACTGTTTGAACACCCTCCGAATGGTTAAC
ATGAAATTCCGTTCCGATTCTGTCATTTTATGGTCGTCTGCCATTTCATA
ACCGAACAAAGCCATAGCATCGGTGACGTGAGCAGCGTTGGTGATATGGA
TGAGCCCATTCATCAAAGTAAGCGCTCGTTTAGGTTTCCATGCAGACACA
TAACGGTACGTGTTGTTTCGAAGGGCGCTCTTTCTGAAATTTTTGACCAA
TCGGTTGGTAGGACAGGTAACGCGCACATCACTAATTATGGTTTCGTAAA
GAAATTGCGCTGTTACTTTAGAGTCGACGTAAGTGGTGAGGTTTTCATAA
GAAGATGAAATGTTAGCGATGATCAGTGTGCCAAAAGGTTTAGTGTGGTT
AGACAAAAATTCCATCAACACCTCTTTACTCTGAAAGTGTTTGGAAGGAC
CAATGCCTGGCTCCTGTGCTGTCGTTCCAATCAACAGATCAACTCCATGT
TTCAAAGAAGTAAGAACGCTCACATTATTGGCAGGAACAGGTAAAACCAC
TGGATCCACTACTAACAGAGAACCAACAAACAAATCTTTGGtcggaaaat
tttgaagatcctCTTGCGCCCAATTCGGATAGACAGTACCAGGTATGGAA
TCAATAACTTCCTTTGGTGTCAAACTATAAAAACATTCCCGAATTTCTTT
CGCGGTGGTAAAATTTCGGCATCTTGATCGCTCGATAAAAATCCGATTAT
CTTTGGCAGCTACGGTAAAATCTCTTGGAAAATAAGGCGAGCCGCTCATC
GGTATACCACGTTTGAAAAGACCATCCGCTAAAGGTGATGCTGCTAATGC
ATATATAGATGTTCCACCAGAGCTTTGACCGGCTACGGTCACTAAGTCTG
GGTTTCCACCGAATTTCTGAATGTTACTTTGAACCCATTGCAAAGCCATT
ATTTGATCTAATAAGCCATAGTTACCATACGAAATGTCTTTTGCCCAAAA
CTCTTTCAACGTCAAAAAACCGAAAGCGTTCAAGCGGTAATTAACACTAA
CACTAACGACGTTCATTTCAGAGGTGAATCGGGGGTGAGGGTTATACCCT
CTCATGTGAGCGTACCCGTTTATTAAATATCCTCCGTGAATCCACACAAA
GACCGGTAAATTAGCATTCTCATCCAAAGTCGGTGTGTGAATGTGAAGAT
AAAGACAATCTTCAGAAGGTTCCACAGCAGTTTTCCCGAAATGATTGGGC
GGGTATTGGATACACATGACGTCAGCGTTATTCGATGTGAAAGTGTCCCT
CAACTTGGCTTTTGGAACAGGTGGTTTCCATCGCCTCTCACCGACTGGTG
GCTCTGCGTATGGGATTCCATAAAAACTATGAACAGTATTTGAATCGTGT
ACAGTTTTTGAACCTTTGAACGTGCCAGCATTCGTTTTAACCACAGATTG
TTGACCAGGTGACTTTTTAACCAAAGCAACAGTTACTGCGATAGTTACCA
CTAAAACAATCAAAACCAATACAATGAACAATGTTCTTTTGCTATTCGAT
TTCAAGCGTCTCTGTGGTGAAGATGGAGGAGGGCCTCCTCTCGCATTGAA
AATGTCTATATCACTGTCAGACTCCGAAAATTGAGGTAAAGGCCCATATC
GTGTTTTGGACATTCTTTCATTTGTattatttttatctatttttctaTGG
AgttaaaaaaagtatacaaaattAGATTGTCGATTGATCTGATAAAAAGC
AAAGAAAGTTCAAAGTGGACAGGCACAAACAAACAAGACAGTTTGTCAAT
AATAGCAATCATAAATATATGAAAATATGATCGTTTGCTGTAAGAAATAT
CAACACTGTCTCTCTAGAACTGATCCTTCGTTGTCGTTGTTGAGTTACTA
AAAAGCCAGTCCGAACTTCTTGTTATTCCCCACTAAGCTCATCTTTCTAA
GCTTGACTAAAATCAAATcattcaagatttaaagttagCTTTTATTCTCG
TTATGTTCCATTTTGTGCCTCATTTCCCTAGTTATTCTTATAAACCAAGG
AAAAAAGAAGTGTGAAGAATTTTTAGCTGCTAAGAGATGTATAATGTCGT
CAAGGAGCCAGGGAAATATTTTCATACTCCATCAATCTTATAGTGCTCTT
GAAAATATCATTGAAAGAGAGAATCAAATgaactcttttttcttttttat
aagaaccagctaattttttatcacgcttggctgttcttattttttgggca
ctttgagcctcgaattgttcttattctgtaTTTATTTATAAGTTGTAATT
AAGGTATTTCAAGCTTTTTACCCAATTTTGACTACTTTGACCTGTAAATT
GCTTGGAATTGAGCAATTTCAGGCTCAGGAGTtcttaaactgttcttata
ttttggtaattttgagcctcattgttcttgtaaaattgttcttaagtaaa
ataaaaagagtgtaattgacaaaaaatatccAATTAGAATCATCTCTCTG
ATCCTATCATTTAAAATTAATAAGATATAATACAAAAACGCGTAcattaa
aatgataaaaataaaacataacacaTTTTTAAAACGATATTTAGACCTAT
GTCTTTTTCAAAATTGGGAAAATCTACAAGTAAGGAATATATACGCAGTT
ATTATGAGAATAtcctctataagaatatcagggtgaaaattggccaaatg
gtaagaataccctaagaataccctagggtgaatttcacagaatttgataa
gaatacagtcattttgtattttgttaacagaaaaaattgcttaggaagaa
atgtaattttaactcaaatgttcactcaaaagtccaaaactctcatgttt
gtaaaaaaagtcaagtctaaaaaagtaagaatacgttaagaatattttac
ccttaattttggcactttcttaagaatacttgaccctcagccAAAGCata
ctattcttataaaaaaaagcgtgtattgtgATATTCAATGTCAAGAGAAA
ACTGGTCTGAAAGTCGTACTGACGAGGGCTTTTTTATTATAAATggcgaa
aaagaaaatttgtaaaagcGTTTCATTCCCGTTCAGTATTCATTTGgctt
aaaagtaaaagaatttAGAATACTACTCAGACAGAATTTTATATCGAAGT
TAAATCGAAGCGTCAAAATATTGTGAATAGCGTAAAGAAGAAACGAAATA
ACGAAAACGTTTTTAAGATGCTAAACACATTATGACCATCATTACAATGC
GGTATCGAGATTCAAGTCATGAAAACATTAGTTCACTCTGACTACCAAAT
ACATTGTAGCAACTAATAACATGTTTCTTTAATTAGTCCATACGTAAGGT
AAGAACCCATTATCAGGGTCGTTCCACATTAGACATTGTTTTTGATGATA
ATCATCTTCCAAACGGACCACATCTCCATCACCGTTAAAAACGATCGTTT
GACCAGCCATCGTTCCTTCCACCACACCTTCCACCATGAACTGTTTGAAC
ACCCTCCGAATGGTTAACATGAAATTCCGTTCCGATTCTGTCATggtttg
tagatttttcttccACCACTTAAAACCAAAGAGCGCAATAGCATCCGTGA
CGTGGGCAGCATCATGGAACGTAGCGAAGATGTCGATCACTTTATCAGCT
TTCCACGCAGAAACATATCGGTATGTATTTTCTCGCAAAACGTGCCGCCT
GATATCTTTAACAAATTGGTCGGTAGCACAACCCACTCGAGCGTCTGTCA
CGATGGTTTCGAACAAATATTGCGGAGAAATCTCCGTTTGGACGTAAGTG
GAGACATTCTCGTACGCTCGGTATACATCTTGAACGTCGATACTTTGAAA
GGGCTTCAACTTCTCCTCAAAGAAGTCAGTCATGTTTTTATGTTCGTTAA
AAAAGCGTACGGGTTGCAGACCAACTTCTTGTGCAGTAGTTCCGATGAGA
AGATCAACTTGGGCTTTGAAGTCGCTCTTGTCCGTAGGAGACAAAGGTAA
GGTTAATTTATCAAGCACTAAAACAGAGCCAACAAATAAATCTTTCGTTG
GAAAATCGAACAGGTCAAGCATAGCCCAGTTCGGATAGACAGTGCCGGGT
ATGGAATCAACAATTTCCTTTGGTGTCAAACTATAAAAACATTCCCGAAT
TTCTTTCGCCGTAGTAAAATTTTGGCATCTTGATCGCTCGATAAAAATTC
GATTATCTTTTGCAGCTTCGGTAAAGTTTCTTGGAAAATAAGGCGAACCG
CTCATCGGTATACCACGTTTGAAAAGACCATCCGCTAAAGGTGATGCTGC
TAATGCAATGACTGAAGTACCACCAGAACTTTGACCTGAGACAGTCACTA
AGTCTGGATTTCCACCGAAATTTCGCATATTTTCCTTCACCCATTTCAGT
CCAAGGATTTGATCCATCAAACCATAGTTTCCGTACGACACATCTTCTTG
CCACAGTTCTTCCAGACTTAGCCAACCGAACGCATTCAACCGGTAACTAA
GGCTGACTGCGACAACGTTCATTTCTGAAGCAAACTCACCATCAGGATAA
TATCCAGGTAAATCAGCGTAAGCATTCATCAGGTACCCTCCATGAATCCA
CACGAAGACTGGTAGATTAGCATTCTCATCCAATGTCGGTGTGTGAATAT
GAAGATAAAGACAATCTTCTGAAGGTTCTCTCTCCACCGGTGGAAAAGGT
GGAGGGTTGTATTGAATACATAGAGTATTTGAAATGTTGGCGATGTAGAT
GTCAGAGAGTTTCTTCTTTGGAACAGGTGGTTTCCAACGGAGCCGTCCAA
CGGGTGGTTCAGCAAACGGAATACCTTTGAAACGGTACGACAccttgttg
ttgtttgtttctttgaaACCTTGAAATGTACCTGCTTGTGTTTggacgat
gacgtcatcattattcGGGACGTCATCATCAGATGGAGTGCTTAACACAA
CAGCCAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00050372-exon-scaffold_17-1491911889:9611..12178 | TCONS_00050372-exon-scaffold_17-1491911889:9611..12178 | Clytia hemisphaerica | exon |
| TCONS_00050372-exon-scaffold_17-1510915933:9611..12178 | TCONS_00050372-exon-scaffold_17-1510915933:9611..12178 | Clytia hemisphaerica | exon |
| TCONS_00050372-exon-scaffold_17-1575043694:9611..12178 | TCONS_00050372-exon-scaffold_17-1575043694:9611..12178 | Clytia hemisphaerica | exon |
| TCONS_00050372-exon-scaffold_17-1491911889:15635..15919 | TCONS_00050372-exon-scaffold_17-1491911889:15635..15919 | Clytia hemisphaerica | exon |
| TCONS_00050372-exon-scaffold_17-1510915933:15635..15919 | TCONS_00050372-exon-scaffold_17-1510915933:15635..15919 | Clytia hemisphaerica | exon |
| TCONS_00050372-exon-scaffold_17-1575043694:15635..15919 | TCONS_00050372-exon-scaffold_17-1575043694:15635..15919 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_17 | supercontig | scaffold_17:9611..15919 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00050372 vs. Swiss-Prot (Human)
Match: EST2 (Cocaine esterase OS=Homo sapiens GN=CES2 PE=1 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 7.074e-39 Identity = 95/264 (35.98%), Postives = 132/264 (50.00%), Query Frame = -3
Query: 1982 FKGIPFAEPPVGRLRWKPPVPKKKLSDIYIANISNTLCIQ---------YNXXXXXXXXXXXXEDCLYLHIHTPTLD-ENANLPVFVWIHGGYLINGYAHMRGYNPHPRFTSEMNVVSVSVNYRLNAFGFLTLKEFWAKDISYGNYGLLDQIMALQWVQSNIQKFGGNPDLVTVAGQSSGGTSIYALAASPLADGLFKRGIPMSGSPYFPRDFTVAAKDNRIFIERSRCRNFTTAKEIRECFYSLTPKEVI------DSIPGTV 2725
F GIPFA+PP+G LR+ PP P + S + +C+Q + SEDCLYL I+TP E +NLPV VWIHGG L+ G A + + + NVV V + YRL GF + + A GN+G LDQ+ AL+WVQ NI FGGNPD VT+ G+S+GGTS+ +L SP++ GLF I SG P +A + + ++ + C + +E++ IPG V
Sbjct: 58 FLGIPFAKPPLGPLRFAPPEPPESWSGVRDGTTHPAMCLQDLTAVESEFLSQFNMTFPSDSMSEDCLYLSIYTPAHSHEGSNLPVMVWIHGGALVFGMASLYDGS---MLAALENVVVVIIQYRLGVLGFFSTGDKHAT----GNWGYLDQVAALRWVQQNIAHFGGNPDRVTIFGESAGGTSVSSLVVSPISQGLFHGAIMESGVALLPGLIASSADVISTVVANLSACDQVDSEALVGCLRGKSKEEILAINKPFKMIPGVV 314
The following BLAST results are available for this feature:
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