TCONS_00050370 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050370
Unique NameTCONS_00050370
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length744

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050370 ID=TCONS_00050370|Name=TCONS_00050370|organism=Clytia hemisphaerica|type=transcript|length=744bp
agggtttttaggagaaaaagagactaaataaaaaaatcatatcaaCTACA
ATGTAGTGAACTTCCACAAGTCGCCTCTATAGACAACATTCTTTCCACAA
ATGGCATCAACTCTGCAATAATaggttgatttttttgtgacgaCCTCTTC
AAGATGTACCACATTTTCTTCCAAACCAACCCGACCCAAAAATACAGAGC
TTTCTTGACTATCAGCATTCTCAACCATTTTCTGATCTGCTCCAAAATAA
ATCACGTGTGAGTTACATCCTAATCCATTAAGccacatcaaaacatctcg
ATTTTTAGACCTAACCGTTCGATAATTATTTGGTGACTAGCTTTGTAGGT
TTGTCAACCAGGAATCCAATAGCATTTCAATTCTGGATCAGCTTGTGATT
CGATGGTCTAAAAAAGCACTCATGTCCAGTACTGAGGAAAATTTGCACTG
GTCTCTCCGGCGACAGAACTTCGCAAATAATTTATATCATTATCTTCCTA
ATATACCATTTTCGACTAAAGTTTCCGGTATAATGTGGTGGTCCAATTTT
AGTAGCAATTCCCGGGAGTTTTGAATTtggaatattcttataaaaagcgt
gtaatgaTCCTACATCAGacaataatatcattaaaaGCGGTCCCTGTTGT
CTGGAAATAATAGCTGTTTTGGGACTGTTTCAAAAGTTTGaactgttccc
agctggcacacaactacttgctctttattttgcccatagaagcc
Run BLAST on NCBI

transcript from alignment at scaffold_169:493725..494468

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050370 ID=TCONS_00050370|Name=TCONS_00050370|organism=Clytia hemisphaerica|type=transcript|length=744bp|location=Sequence derived from alignment at scaffold_169:493725..494468 (Clytia hemisphaerica)
ggcttctatgggcaaaataaagagcaagtagttgtgtgccagctgggaac
agttCAAACTTTTGAAACAGTCCCAAAACAGCTATTATTTCCAGACAACA
GGGACCGCttttaatgatattattgtCTGATGTAGGAtcattacacgctt
tttataagaatattccaAATTCAAAACTCCCGGGAATTGCTACTAAAATT
GGACCACCACATTATACCGGAAACTTTAGTCGAAAATGGTATATTAGGAA
GATAATGATATAAATTATTTGCGAAGTTCTGTCGCCGGAGAGACCAGTGC
AAATTTTCCTCAGTACTGGACATGAGTGCTTTTTTAGACCATCGAATCAC
AAGCTGATCCAGAATTGAAATGCTATTGGATTCCTGGTTGACAAACCTAC
AAAGCTAGTCACCAAATAATTATCGAACGGTTAGGTCTAAAAATcgagat
gttttgatgtggCTTAATGGATTAGGATGTAACTCACACGTGATTTATTT
TGGAGCAGATCAGAAAATGGTTGAGAATGCTGATAGTCAAGAAAGCTCTG
TATTTTTGGGTCGGGTTGGTTTGGAAGAAAATGTGGTACATCTTGAAGAG
GtcgtcacaaaaaaatcaacctATTATTGCAGAGTTGATGCCATTTGTGG
AAAGAATGTTGTCTATAGAGGCGACTTGTGGAAGTTCACTACATTGTAGt
tgatatgatttttttatttagtctctttttctcctaaaaaccct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031897XLOC_031897Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050370-exon-scaffold_169-1491911889:493725..494468TCONS_00050370-exon-scaffold_169-1491911889:493725..494468Clytia hemisphaericaexon
TCONS_00050370-exon-scaffold_169-1510915933:493725..494468TCONS_00050370-exon-scaffold_169-1510915933:493725..494468Clytia hemisphaericaexon
TCONS_00050370-exon-scaffold_169-1575043694:493725..494468TCONS_00050370-exon-scaffold_169-1575043694:493725..494468Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_169supercontigscaffold_169:493725..494468 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.331568	0.129332	0	0.0734576	0.35771	0.212	0.852565	1.67614	0.335287	0.346089	0	0.353316	0.220515	0.229007	0.15062	0.202048	0	0.204097	0	0.147531	0.192347	0.18764	0	0	0.142396	0.25417	0.090929	0.0970419	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050370 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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