|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050327 ID=TCONS_00050327|Name=TCONS_00050327|organism=Clytia hemisphaerica|type=transcript|length=1156bp
GAAAAGGTATAGGATCCAAAGATATAAATGAATGAGCAGGAAAGTACACT
ATGGCTGGTTATGATCATTCGAAAGGAATTGGAATTAAAGAAATCACTGT
TGTTGAAGTCAGGAATCCAATTGTTCAACATGAAGGTTCATTGAAACAAT
TCACAGACTATGAAGTCTGTATAAAAACAACAAGTAAAGCTTTTATCATT
CCCCAATCCTCAGTAAGAAGGAGATATTCAGATTTTGTTTGGTTGAAAAA
ATGGCTGGAAAAACAAAATGATGCTTTTTCAAGAGTGAGAACACCTAAAA
TGCCGCCAAAGAAACTTATGGGTAAGACTGATCCAGATTTTATTCAAGCC
AGAATGCGTGGTTTACAGAAATTCTTGAGAAAGATTATTGAGCACAATGT
CTTTCTTTCAGACAAGGCTCTTCATCTTTTCTTACAAAGTACCATGAAAG
TGAAACAAATTGAATGCTATTTGGTTGGGAATTCAACAAAAGAGTTTGTC
GATAACAGTGATGCTCTTGTATCTCATTTTGAAGCTGAAAAGAAGCAGAC
TACTCAATCTGTGCTTCATAGTATCAGCGAGAGTTTACCAATTGAGCAAA
ACGATGATAACCAGAGTGAAAGCTCTAGATCTAGAGCAGCAAGCTCCTAT
GGAAAAAGCCCTTCCTACAGTGCAAGCTCAATCAGTACTAACTCTTTGTT
GGACTCATTTGAAGCAATAAGTGTTTCTGATTGTGAAGCCAATGACCGTG
AGGAATTGACGTCAGTTGCTGTTATAGAgcatttgaaaataaaacaactt
GTGCGTGAAAGTGAGAATAAAGAGGAAAGTGATGCAGATAGTTTGAAAGG
AATGCAGGAGgatgaaaagaattttgacCTTTTGGATGATGAACCGGTGA
AGGATAAAAACAATGGTTCTCAGAATAGTCTGGCTGAATGTGATAGACAG
GACAAATAACATAACAAAATGttactttaattttttattttgatataaaa
catatttttctaaaatatagATAAACTACTCTTTCAATCATAGGGTTTGG
GTGGAAAGGCTCTTAAGGCCATGTTAGACACAACATTTTTTGCCAACATT
TTAgagaattttctaaaaattggtaTAATTTTACCATATTTGAGCGTGTA
AACATG Run BLAST on NCBI transcript from alignment at scaffold_169:450583..460362+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050327 ID=TCONS_00050327|Name=TCONS_00050327|organism=Clytia hemisphaerica|type=transcript|length=9780bp|location=Sequence derived from alignment at scaffold_169:450583..460362+ (Clytia hemisphaerica)
GAAAAGGTATAGGATCCAAAGGTATATctgtaattttaattttatgtaCA
TTTTATGCCTATTTTCagtaaaaaaagaagacaaagtTTGCAAGAATTAC
AgcatatttttttggaaaattggggtAAATTGGGTGGGAGTAGATCTTGT
ATTTTCTAGTCTTTGATCTcaagttttctttttgattatcaccagacgat
ctcaatcgaacggaatcgacgatcgaaccagtcaaaccaaatcgaacgca
atcgaccgattgaaattcgattgtcaatcaaacgtcaaaattctgggtaa
tattcgattggttcgattgttgttcgactggttcgatcgtcgatcgattc
cgttcgattgagatcgtctggctttattcttgcagcttcccaacatccaa
gctctcaaacatcacaagccgaatgaaattactttcgattttctgtagaa
attatgcgatgaacaatccgggggtcaatgaatcgacgatcgaacgcaat
cgaacgcaatcgaacatcaatcgaacgcactcgaatatcaatcgaatctg
aaaattgcggtaacattcgattgagattcgattgcgttcgataatcgaat
ttcaatcggtcgattgcgttcgatttggtttaactggttcgatcgtcgat
tctgttcgattgagattgtctggttaTCAGTTGGGtgtttttaagataaa
aacagcAATAAGGGATCcccgacaaaaaactttcaaattttttatcggAA
TGCCCGAAAAGGGGGCTAGGAGTCCAACTATATACCGATaaaaaacaagt
attgggaCGAaaagccaatttctttctgatttcgtccTCAAATTCCACTG
AAAGCATGCAATTTTCACTTGCTGTCACCTTCGTGCACAAATTTGCaact
ttacaaaaatatttttccattgcCAGGCATTGTCAATCAaactgtttgat
taccgaactaatcgaaccctatcgaacgatTGCTGTTCGATTAAGGAACC
CAATCGAACTACCTATCGAACAAGGAAAACCTTCGTAAAGTTTGACTGTT
CGattcagtgaagtcaagtttgaagatattctttattagaaaaacagtta
aaagcagtcaaaacgcaatttcccttacctcctgagtttgtctttgttat
gctaaaatataacaaacctttgtcctgctgtctaattacaaaaacctcca
atcactacttctccgccatcttgtNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNcacttctccgccatcttgtttcactttaaatgccgtgttttaaaatt
ccttagctacattatatgtacggaaaaggttttctccaggtttttttcAA
TCTCGGGATTAAACTTCGAGGGCGGTTCCGTccacttatttttatttcgg
CGTTAAGCGCCCcgggatacttaacaataaaagagattttaagattaatg
ttgaaaagcatattttttcgataaatttaggcNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCAAAGATTATATTTCCGCCttgactttcact
ttcgctttcgtgttacgcgattccaattggatgaatacTGCTCGCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNctgagcgtgaattctgattggatgaatacctgaaaagt
aaacaatagtatgtaagtattttgcttatcaaaacctaaagatttccagg
gggttttatttactttacatggcgataattaagcctacaaaacaccgaga
aaaaaacccaacatagaacaggtgtattttgtaatgtagaatatgatagc
gtgaatctttttgaTATTCTATGTCAGGATTTGTTCTCAATGACCCGTAA
CTATGCCcggggtacccgttgctaagaccttatgttaaaaacgaaagcga
ttacggcaaaaagtagcgattttcgtaatacctcaaatattcaTACTTGA
GACTGTACTGCGATTATACGATTATGTATAGTTCGATATTGTTCGATCAC
AGTTCGATGAATCCGATTGACAAGCTAGCtgtaaaacagcatctaataac
atgaaaaagGACCCTCGCGGCGTTCCGGAAACGTCTGGAGCAAAAAGTGC
CGTTTTTATCATGCTCCGGAACACTGGAAGATTCCGGAGCACTTCCGGTG
TTCCGGAGATAGATTTTCGGCAATTGGTCTGCACCGGAACTCCAGAACGT
TTCGGAGAAGATATCCAAGATATAATTACGATAGCGCTCGCTGTGCTAAT
CATGTGAAAACTACTGCGCACgtgcatatttttaaaatatcagctgactc
acattttttaattttttcgatatTTCCACCATTGATGCTTCCGAATataa
tgtgacaaattcaatttcatttaatGGCTGAACCATCATATTGTATCAAT
ATTTCGAATATTTTTTGTAATgcttaaaaaacagttttttatcatgtgtt
aaaaatcacttgctcctGAAGCACCGGAAGAGCTCCGGAACTTTCCagag
agaaaaatagtgtttttttaacTGCTCCGGAAAACTCCAGAAGTTTTCGG
AGTGCTGGGAGGGTCatcatgaaaaccagaatatgattcttcaatgggaa
tcaaaactataaagtgcacttacaaacatcaatttgtcagatctaacaaa
atcagtaaccgcactgtcatcattgacaataaaacaaactattttctgtc
aagagccttgtaataattccaacaacttccatcgaaatgatctatcacag
ctcaatCAACCATTTTTAGCgtggtccgaggattgagccgagaactttTG
CAGAGCGCTTGCAGAACGCTTGCAGAACGCTTGCAGAACGCTTGCAGAAC
GCTTGCAGAACGCTTGCAGAACGTCTGTGAGTTCTCGCgagggtgaaaaa
cttcaatctgtcactcattttctcaagcgaagagaaagcaaaataaattc
tagctttacgatagtacCGTGGGGGAtgatcaatggatagtattcgatta
tcattatccctttattttcattcctagaacttttgcaaatgaaaggaaaa
atagaaaagttgtattttttactgctctattcacatactgaattgaaaga
tcttctatgtgacgtttttttgcaaacttcaaaaaacttatttttgtgCC
GCCTTTGCAGGACTTTGACTTAAGTGCTTGcatgcagcatagggtacaaa
gtccaaacatgtgTGAGAAAGCGGAAAACGCTAGTGTGGGTTGGATAAGA
TCGAATGATAGGTGAAGACATGATGTTATAAAAAGACTgaatatatttga
caatgaagaCATACTAAATAATCCCTAACTTTATCTTAGCTGATCTGGAT
TATGCCAATATATTAGTTAGATGAATTTGAATATGAAGATTCATGGTTGT
CTTGTCGATGGTCAGGCTTCAACTGTCCTTGCTGGAGAGAATGGACTCTC
AAAACCACATGGCACAAGGAGGAGAGCTCACTCGGCCCAATCTCCCAGCA
AGGAACTCAAAGGAGAAGTGCACTGGGGGTCAGTAGAGATCTAGACTAGC
CTCATGTTCAAACAATGATCTCTATTGTCAGGGCAAGATGGTAGACCTAG
CCataatatatattatacaaACATATTATCCATGTAACATATAATACATC
CTATAACATACATAAAACTTTCAATCATAATATATATAACCTTAGTTCTG
GTTCCTTACACATgcatttcccgtaatttttgtatgaagagttaggcagt
gctgcaaataaggaaatGTGAGTTGGCCGGCAATTTTTACGAGCGTAGCA
TGTAAATTTTGAGCAGGGGGtctgagaaaatttttggagTCTTACATtgg
ctaaacacctattttaatttaaaatctgTTCCTCTTTTATAGCGGTATTA
AGCATCTAGTTGGGTTGTAAAGCACTTTTTTATGCTGCTGTCAGTCAGTG
TTTCTTTaatcaaaatattatatataGGCATGCCAAAGCTATTCACTACC
TAGAAAGTATTNGTGTTTctttaatcaaaatattttcaggcaTGCCAAAG
CTATTCACTACCTAGAAAGTATTAATATTGCCTATAGTATTGTTAGGTGC
ACACAAGTAGGGTAGTGTTTGTAACGAAGAAATTTAGATAGGTCAGCTAT
CTTTCAGTGATTCAAGCGTTCAAACTGTAAAATTAAATAATGACAAACAT
AAGAAACTAGAAAGAAAATGTGAACAAAACTAAGTTCTAAAGCTAGAGTG
AGACTCGTACGAGTGAAATGATTAAGTCCAGATCctataccgggtgtgcc
acaaaaagttaccctctttgatttgatattgcaggcagtagaaaagagat
ttttcaaagattgtttccgaatcattcagaggaaagcctaacttaaaatt
tggtgtatcactttttaattttacttcattggttcaaaagttatgttcaa
aaatctaaaatgtcaatttaaaaatatgtcaaaaaaaggTTGTAAATACG
AAGGAACCAACTTTTTAGAGCAGTTCTTATAATTATAGTTTGGTAAGTAT
GAGGAACTAAAAAGAAATGTAAttaaattgattaaaaattacGAAAGAAG
CCTATAAATTTTTACCGGACAAAGTGAAAACGTAAGCTTCAGAATGACCG
GTAGAAACTACgaaatgaccggtaattaccggtcaccggccgttatttgc
agcactgttaggtctatactgattgaggttcgatcagttcgattaagatt
gatgaagtttgattggttcgattagttcgatttaTATATACCTTGCcccc
caattttttatttatattcatTCCGAGAGCATATTGGCGGCTGcccagca
gattttttttctgtacATGGACGGAAGTATCATCAACGGTCGGGAGTAcc
tcatctttgttgtttggttttgttttttggaATTGCTTATGTCAGGGTTg
gtagtaacggcttgtcactgtgccgggtgcatactcagtgtagctggaac
ctcgatattccaggattagaaaaagctatacctgtcggcaaaaagaattt
tcccgggggtttgaggaataaacagaactgctgtcatttgttttttattt
aaccatatatttaaatttgcactcaaaaatacttaaataaataagttaat
aatattcaatatactatttgtatctctcagaaaataaacacttacagaac
gacatagtttatcatttggaatacccccgtgtttggaccattgTATTGTG
GTCACAAAATAGGGCGGAAGCTAAGTAActccctcagtgcaagattgtcg
cctcatctttattcgcccatgcgagaatgcgagctaatcattttttctcg
cgcgctcaaggggaaaaggaaagtgattgatattctttgaaggaaaaacg
tcagaaacaaacccaaagaccaaaagatgtaNNCGGAACGCTGAAAAAGT
CTAATTTcaatcttccttaaggtaaagaggttgcgagatttggattagcg
aggcaaaaattgctaaaaagctggtaaaattgtaatcctcaaaaatcgaa
gttcaaGCCTCAAtgatactcggcgccttgggccccgcagggttgctagt
aacagCTGCCCACAAGCCATCCTCGCGGGCCATCCAATATCTATCCCAtc
ggatgggacaagctggagcttttacTAGCTCTTTTacgatttggttggtc
gttggtcgatttgtaaaaaaaaagatcgtaatttttggacctacctccgg
gtaccccggtggaggttctataaattaacccatgtccgttcgtccgtccg
tccgtctgttaccagcttttctcaggattgNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNtggctgaagtggtttttcccggaaaattcttattcgcct
taaaaaacggattttcgtattttggggaaattccctttaaccaaatgaga
aaatatagcttttctcaaagttgactcattatttttttctgattttttgc
agaatgatgcaaaatgacaatgcctaaaatgtgacggagccagattttta
aggaaaatttttttgggcaaatttgggccaaaaacagcttattaggtttt
ttgggtctgaatggtttaagtgattttcgtatttggggaaattccttttt
accattttacattattcaacagacaagctttatttttccattctgaattt
ttgtacaattattgtcacttttttctaattttcatctgatgttaatcatt
aggtaggtccattcagcatgttgcttgttattactttctttaaagaaagt
gcCATCTCTATTATATACTTCAAATGAGCAATGAGCGAAGCATACATATT
AAAAAAGCTTGAACatcaatcaaactcatcgaacatcaatcgaaccctat
cgaactTCATTGAACAAAGAACAGTCGCGAGATCAACGCGATGATTGACA
TGATTGGAGAAAATTGTGTTTTCAAAGAggtaaaagtttgttttgaaaat
tttggccgataagagcaagggggggagggggtctgaagcttatTGGCCCA
ATGCCAAtaagaaatttgaaagtttttttcgaaGACCCCTTATTGCtcat
tttggcaatttttttttttacttttctgctgattcagcatttcattgttg
aaaaaattgccgttttcggcaataattgctcaaaagagcaataattgctg
tttttattttaaacacCCTCAACTGATTATATGTTAACACGTTGGCTAAA
GACCCATCGGGTGCATGACTAAAAGAGccattccagaaattttctgtATT
CATGATATATACACCACTCAAGAGTCTTcagagaacttttaaaatcttcc
agaaaaagtgacgtattgggtggaaaattttaaaatttctcaaTCTCAGC
ACTCAGCTAAGGCaaaagactctccagtggtgcatatcatgaataccccC
TCTGGATGACACaactttttgcaaaatttatgCCCTCAAGGAGAGGAGAC
ATTGGAAATTCCACATTtctcatttttgagaaaatgccttgtaatttgat
catttttgagaaaaagccttggaaatttatcttttttgaactttaggctt
ggaaattttgaatttatcaaAAACGATTTGcccttaaaaatcttttgtcg
tCTGCCCCCCCCCATATATCAGATATATATATGCCCAAACTTTTGCAGGC
CACTTggcaattttgaattttaaagagTCTTCAGAGGCAAAAATCCATAA
GTTTGTGGTCCAAATTTGGCCTGATTATGTACAGCACTTAAAATACATAA
GAATACTTCTGATGATGGTGATAAAagcttgaaatttggcacagatgacc
cttagagggtttaaaacttaattttaaacaataaCACAAAATTTAGTCAC
CTGACCAACTGCCAATTAATGTAATCAGATGGCTGagtaagaaatttatt
ttttgaaaatattcaaaatctgatggtcaCAAAGAGCAagaaattctgat
gaaaattgaggtataaagcacgttttgaaaatgttctaaCAAAAACTTCA
TCAgtctttccaggcaaaacttaaaaaacctTATAATGTTGGAacatttg
accaaattttatgttttatataagaattcATATACATATATCTGCAGACA
CATGTCtcgtccttcccaggactcatcAGTGCTGCTCAAgtaagcgagca
tagactgctgttgtcaccagagtgctGAAACACCATGAGTGTTGAGCTTt
gcataatcgcttgtggtaagCGGAGAAGCAACGCTTTAAATCAGATGCCC
TCATCAAGGGGTTGTAAACATGATTTTTTGTCTTCTCCCCTGAGCAAAAC
TACctctataatatttttttaatactttATAATGCAAAATAATAGATATA
AATGAATGAGCAGGAAAGTACACTATGGCTGGTTATGATCATTCGAAAGG
AATTGGAATTAAAGAAATCACTGTTGTTGAAGTCAGGAATCCAATTGTTC
AACATGAAGGTTCATTGAAACAATTCACAGACTATGAAGTCTGTATAAAA
ACAACAAGTAAAGCTTTTATCATTCCCCAATCCTCAGTAAGAAGGAGATA
TTCAGATTTTGTTTGGTTGAAAAAATGGCTGGAAAAACAAAATGATGCTT
TTTCAAGAGTGAGAACACCTAAAATGCCGCCAAAGAAACTTATGGGTAAG
ACTGATCCAGATTTTATTCAAGCCAGAATGCGTGGTTTACAGAAATTCTT
GAGAAAGATTATTGAGCACAATGTCTTTCTTTCAGACAAGGCTCTTCATC
TTTTCTTACAAAGTACCATGAAAGTGAAACAAATTGAATGCTATTTGGTT
GGGAATTCAACAAAAGAGTTTGTCGATAACAGTGATGCTCTTGTATCTCA
TTTTGAAGCTGAAAAGAAGCAGACTACTCAATCTGTGCTTCATAGTATCA
GCGAGAGTTTACCAATTGAGCAAAACGATGATAACCAGAGTGAAAGCTCT
AGATCTAGAGCAGCAAGCTCCTATGGAAAAAGCCCTTCCTACAGTGCAAG
CTCAATCAGTACTAACTCTTTGTTGGACTCATTTGAAGCAATAAGTGTTT
CTGATTGTGAAGCCAATGACCGTGAGGAATTGACGTCAGTTGCTGTTATA
GAgcatttgaaaataaaacaacttGTGCGTGAAAGTGAGAATAAAGAGGA
AAGTGATGCAGATAGTTTGAAAGGAATGCAGGAGgatgaaaagaattttg
acCTTTTGGATGATGAACCGGTGAAGGATAAAAACAATGGTTCTCAGAAT
AGTCTGGCTGAATGTGATAGACAGGACAAATAACATAACAAAATGttact
ttaattttttattttgatataaaacatatttttctaaaatatagATAAAC
TACTCTTTCAATCATAGGGTTTGGGTGGAAAGGCTCTTAAGGCCATGTTA
GACACAACATTTTTTGCCAACATTTTAgagaattttctaaaaattggtaT
AATTTTACCATATTTGAGCGTGTAAACATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050327-exon-scaffold_169-1491911889:450583..450603 | TCONS_00050327-exon-scaffold_169-1491911889:450583..450603 | Clytia hemisphaerica | exon |
| TCONS_00050327-exon-scaffold_169-1510915933:450583..450603 | TCONS_00050327-exon-scaffold_169-1510915933:450583..450603 | Clytia hemisphaerica | exon |
| TCONS_00050327-exon-scaffold_169-1575043694:450583..450603 | TCONS_00050327-exon-scaffold_169-1575043694:450583..450603 | Clytia hemisphaerica | exon |
| TCONS_00050327-exon-scaffold_169-1491911889:459228..460362 | TCONS_00050327-exon-scaffold_169-1491911889:459228..460362 | Clytia hemisphaerica | exon |
| TCONS_00050327-exon-scaffold_169-1510915933:459228..460362 | TCONS_00050327-exon-scaffold_169-1510915933:459228..460362 | Clytia hemisphaerica | exon |
| TCONS_00050327-exon-scaffold_169-1575043694:459228..460362 | TCONS_00050327-exon-scaffold_169-1575043694:459228..460362 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_169 | supercontig | scaffold_169:450583..460362 + |
Blast
BLAST of TCONS_00050327 vs. Swiss-Prot (Human)
Match: SNX11 (Sorting nexin-11 OS=Homo sapiens GN=SNX11 PE=1 SV=2) HSP 1 Score: 115.546 bits (288), Expect = 3.025e-29 Identity = 62/147 (42.18%), Postives = 90/147 (61.22%), Query Frame = 3
Query: 87 KEITVVEVRNPIVQHEGSLKQFTDYEVCIKTTSKAFIIPQSSVRRRYSDFVWLKKWLEKQNDAFSRVRTPKMPPKKLMGKTDPDFIQARMRGLQKFLRKIIEHNVFLSDKALHLFLQSTMKVKQIECYLVGNSTKEFVDNSDALVSH 527
+E+ V V++P VQ+EGS + DY++ + T SKAF S VRRRY +FVWL+K L++ V P++P K T +FI+ R +GLQ FL K+++ V LSD LHLFLQS + V +IE + G ST + SDA++ +
Sbjct: 14 EEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGL---VPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQGRST---MTVSDAILRY 154
The following BLAST results are available for this feature:
|
