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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050308 ID=TCONS_00050308|Name=TCONS_00050308|organism=Clytia hemisphaerica|type=transcript|length=483bp
CAGGTAATATATCTGGTACTTTTCGAGGTATAAATGGTCCGTCAATATCG
CCGCAATCATGGACCTTCGAAACACCTGTTCTCGAAATTATTGATGTACA
AGTTGAACCACTTGAGATTGATTTCAAAACTGATACAACGAGCTTTGAAT
TCAACATTAAAGTTTATTTGGCGTACGATTCATTCGATCCTGAATACCCA
ACAACTATTGCAACAGTCAAAAGTTGTACATTAACTTCTCCTACTGGAAA
CTCTGAAGTCATTGAGTTTGTTGATTATTCGTATATCGAGTATACAGGCC
GGCGTcatgatttgaaaatttacGTTCAGTACCTTGCCCCAGTAGGTCGA
ATTGACTTTTTCACAGAAAATCCATACGATCACTTGACTTTGAAATGTGG
TGGTATTACTACCTCTGTACCAGTTCTGAGCCCTTCAAGTGAAGaATTTA
ATTTGAATGTCAGAGATGAAGATGCAATGGGCG Run BLAST on NCBI protein sequence of TCONS_00050308-protein >TCONS_00050308-protein ID=TCONS_00050308-protein|Name=TCONS_00050308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
GNISGTFRGINGPSISPQSWTFETPVLEIIDVQVEPLEIDFKTDTTSFEF
NIKVYLAYDSFDPEYPTTIATVKSCTLTSPTGNSEVIEFVDYSYIEYTGR
RHDLKIYVQYLAPVGRIDFFTENPYDHLTLKCGGITTSVPVLSPSSEEFN
LNVRDEDAMG Run BLAST on NCBI transcript from alignment at scaffold_169:185801..187361+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050308 ID=TCONS_00050308|Name=TCONS_00050308|organism=Clytia hemisphaerica|type=transcript|length=1561bp|location=Sequence derived from alignment at scaffold_169:185801..187361+ (Clytia hemisphaerica)
CAGGTAATATATCTGGTACTTTTCGAGGTATAAATGGTCCGTCAATATCG
CCGCAATCATGGACCTTCGAAACACCTGTTCTCGAAATTATTGATGTACA
AGTTGTAAGTACTCTCCCACCAGCACTTAACGTTATAACAACGTCAGCTg
gatttggatattttcttcccTTCCTTTCCTGTCCTTTGCTTCTACCTata
tctctctctaattcgattttcaagcgATAGAGAATCTtctttcgaattag
agaaagattctaATTACAGGAAATACGAAATAAGAATTCAGCTAAAATAG
CTGACGttacatgatatgcaccactgcaatgtcttctgacattacgtcac
ggaaccaatagctcattggttggaagtgacgtaaaagcagtcaatacgtc
actttcaaccaatcagctattgggtggaacggaagacattgcaatggtgc
atatcatgaatagcctcattattcttatgaaatttctaataaaaaagaga
ATGTATTTCAAGGGCGgaaattaatatatttttgtatttgatATTGATAG
GAACCACTTGAGATTGATTTCAAAACTGATACAACGAGCTTTGAATTCAA
CATTAAAGTTTATTTGGCGTACGATTCATTCGATCCTGAATACCCAACAA
CTATTGCAACAGTCAAAAGTTGTACATTAACTTCTCCTACTGGAAACTCT
GAAGTCATTGAGTTTGTTGATTATTCGTATATCGAGTATACAGGCCGGCG
TcatgatttgaaaatttacGTTCAGTACCTTGCCCCAGTAGGTCGAATTG
ACTTTTTCACAGAAAATCCATACGATCACTTGACTTTGAAATGTGGTGGT
ATTACTACCTCTGTACCAGTTCTGAGCCCTTCAAGTGAAGGTATGcatgt
gttttcttttttaattaaaaacaagGCATTGGTATGGAGgtttaaagaaa
aacaggagttgaatttgTCGCTAATTGTTAGTTagtcttttgatttattt
tataatGATTTACCAAAAGGAATTCTAAGGCTCACCCGATGAAATTCCTA
TAGTATATCAGGAATTTCAATGCCCGTTTTTGGCAACATGTATATAATAA
TGAATATATTCCTTAATCCTATTAAAATTCCTAAAActataataaaaatt
aaaaaaatacttcCAAACTTCGAAAAATGTGATCTATACTTTAACTgtaa
ggtcccgaatagtagggggTCCAAATAAAAGGGGGGAGGGGtccgaattt
tttttaaatataataaaggggggggggtcggaaaCTATACCTctgaaaac
ttcaaaataaggtAATCATATACTTaaaccaggctatttagagcaatcCA
GATTttgatagctgaaaatattttcacaaataAATTAAGGGGTGGGTCCG
AAAATAACCGGGGGAGAcgtttattcgggaccttaTATATCGTCTTCATT
TTTAGTCTTTTGTCAAAATTCGATCTAAGGTTCATTTTACGATTTTAatg
tcattatttttttttcgtctagaATTTAATTTGAATGTCAGAGATGAAGA
TGCAATGGGCG Coding sequence (CDS) from alignment at scaffold_169:185801..187361+ >TCONS_00050308 ID=TCONS_00050308|Name=TCONS_00050308|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_169:185801..187361+ (Clytia hemisphaerica)
GGTAATATATCTGGTACTTTTCGAGGTATAAATGGTCCGTCAATATCGCC
GCAATCATGGACCTTCGAAACACCTGTTCTCGAAATTATTGATGTACAAG
TTGAACCACTTGAGATTGATTTCAAAACTGATACAACGAGCTTTGAATTC
AACATTAAAGTTTATTTGGCGTACGATTCATTCGATCCTGAATACCCAAC
AACTATTGCAACAGTCAAAAGTTGTACATTAACTTCTCCTACTGGAAACT
CTGAAGTCATTGAGTTTGTTGATTATTCGTATATCGAGTATACAGGCCGG
CGTcatgatttgaaaatttacGTTCAGTACCTTGCCCCAGTAGGTCGAAT
TGACTTTTTCACAGAAAATCCATACGATCACTTGACTTTGAAATGTGGTG
GTATTACTACCTCTGTACCAGTTCTGAGCCCTTCAAGTGAAGaATTTAAT
TTGAATGTCAGAGATGAAGATGCAATGGGCGGTAATATATCTGGTACTTT
TCGAGGTATAAATGGTCCGTCAATATCGCCGCAATCATGGACCTTCGAAA
CACCTGTTCTCGAAATTATTGATGTACAAGTTGAACCACTTGAGATTGAT
TTCAAAACTGATACAACGAGCTTTGAATTCAACATTAAAGTTTATTTGGC
GTACGATTCATTCGATCCTGAATACCCAACAACTATTGCAACAGTCAAAA
GTTGTACATTAACTTCTCCTACTGGAAACTCTGAAGTCATTGAGTTTGTT
GATTATTCGTATATCGAGTATACAGGCCGGCGTcatgatttgaaaattta
cGTTCAGTACCTTGCCCCAGTAGGTCGAATTGACTTTTTCACAGAAAATC
CATACGATCACTTGACTTTGAAATGTGGTGGTATTACTACCTCTGTACCA
GTTCTGAGCCCTTCAAGTGAAGaATTTAATTTGAATGTCAGAGATGAAGA
TGCAATGGGCGGTAATATATCTGGTACTTTTCGAGGTATAAATGGTCCGT
CAATATCGCCGCAATCATGGACCTTCGAAACACCTGTTCTCGAAATTATT
GATGTACAAGTTGAACCACTTGAGATTGATTTCAAAACTGATACAACGAG
CTTTGAATTCAACATTAAAGTTTATTTGGCGTACGATTCATTCGATCCTG
AATACCCAACAACTATTGCAACAGTCAAAAGTTGTACATTAACTTCTCCT
ACTGGAAACTCTGAAGTCATTGAGTTTGTTGATTATTCGTATATCGAGTA
TACAGGCCGGCGTcatgatttgaaaatttacGTTCAGTACCTTGCCCCAG
TAGGTCGAATTGACTTTTTCACAGAAAATCCATACGATCACTTGACTTTG
AAATGTGGTGGTATTACTACCTCTGTACCAGTTCTGAGCCCTTCAAGTGA
AGaATTTAATTTGAATGTCAGAGATGAAGATGCAATGGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050308-exon-scaffold_169-1491911889:185801..185904 | TCONS_00050308-exon-scaffold_169-1491911889:185801..185904 | Clytia hemisphaerica | exon |
| TCONS_00050308-exon-scaffold_169-1510915933:185801..185904 | TCONS_00050308-exon-scaffold_169-1510915933:185801..185904 | Clytia hemisphaerica | exon |
| TCONS_00050308-exon-scaffold_169-1575043694:185801..185904 | TCONS_00050308-exon-scaffold_169-1575043694:185801..185904 | Clytia hemisphaerica | exon |
| TCONS_00050308-exon-scaffold_169-1491911889:186351..186690 | TCONS_00050308-exon-scaffold_169-1491911889:186351..186690 | Clytia hemisphaerica | exon |
| TCONS_00050308-exon-scaffold_169-1510915933:186351..186690 | TCONS_00050308-exon-scaffold_169-1510915933:186351..186690 | Clytia hemisphaerica | exon |
| TCONS_00050308-exon-scaffold_169-1575043694:186351..186690 | TCONS_00050308-exon-scaffold_169-1575043694:186351..186690 | Clytia hemisphaerica | exon |
| TCONS_00050308-exon-scaffold_169-1491911889:187323..187361 | TCONS_00050308-exon-scaffold_169-1491911889:187323..187361 | Clytia hemisphaerica | exon |
| TCONS_00050308-exon-scaffold_169-1510915933:187323..187361 | TCONS_00050308-exon-scaffold_169-1510915933:187323..187361 | Clytia hemisphaerica | exon |
| TCONS_00050308-exon-scaffold_169-1575043694:187323..187361 | TCONS_00050308-exon-scaffold_169-1575043694:187323..187361 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_169 | supercontig | scaffold_169:185801..187361 + |
Blast
The following BLAST results are available for this feature:
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