TCONS_00050301 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050301
Unique NameTCONS_00050301
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1781

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050301 ID=TCONS_00050301|Name=TCONS_00050301|organism=Clytia hemisphaerica|type=transcript|length=1781bp
GCCGAGCAGTGCTCCTGAGGTAGCCGCACCAGTAGAAGAATTGAAAGCAC
CCGAGCCCGCCCAAAAACCACCTTCACCTGCTCCAAAGCCAAGTGAAGAA
ACGCCGAGCGATGCGCCCTTATCACCACCTGCAAAAGAAGAGGAACCTGA
AGCCAAGCCCACTCCTGCACCCTCCCCTAAACCAGAAGCCACTAAGCGGC
CCATGGTACCGAAAGCTGGCTTACCGATGATGGGTGGTGCCGCCCTTATG
GCTGAAATGAAGAAGAGACAAAACAAGGATAAGCCAGAGCAACCTGCACC
TCCGCCTGCTGCGAAGCCAAAACCACCACCCGCTGCCCAAAAACCTGGTA
TAGGAAGTCGCGCAGGATCTGTTTCCGGACCCAAGCCGTCACCTCCAAAG
AGACCTGTCTCATTAAAACCAACGGAAGGAAAGTCTGATGTTCCGGATGA
GAAACCAAAGCCCGCGATACGACCACGCCTCAATACAACTCCCAAACCTT
CCACTCCCAAACCGTCCGCTGAACCCACTGAAgAAAAGAAAACTGAAGAA
AGCACTACCGAAGCCAAAGATGAAGaTTCTGAAGTTAAAGAATAAATTCA
TATTGAAGAAGCCGGTGGTTGGAGTAATATCGAGAGGTTCATTTAGACTA
TTGAAATTATAAAGAACAATGCTCCTTTTTGGGGCGTCCCACCTATCCTG
TCACTACTGCTGCGTGGCGTTGATTTTTTTAACGCCCATTTCAATGTTGT
TGAATACTAAATGGCCAGTATTTATTTAAATAGGGaaaagaataaaatga
aaaattgaaaattttatttttaattaattttttataaatataaaaagaat
AGAATTCCCTAAAAATTGAGGTGATCTTTttgtttatgaattttttttgt
tttttatattttctttgattttgaaatttgttttgtttatatttttaaag
aattattgtttttttatatgaTTATGAACTCTTTGTAAAATAATTagcac
tttttcacttttaccTAATCTTACTGCAAATTTTCAAGGtctttttgaaa
tgaaaaaagggTCATCAATTTCTAAaagattttataaaaacttattAAAA
AGACTGCCCTCGTCAACATCAGATCACCGAATAAAAGattctgatttttg
aaaatgttttgttcttttttttgaatATGTAAATTTATTCCATTCTCTTA
TCTTTTTAGATGTCacctttttttctaaattataaAATGCCAAGTCGCAA
GTTGGAGATAATTGACTTGCtgcaaatatatttttctatagTTATTATTG
GATAATTGAGTATTTACTATAATAATCACAACAAACTCTCTCTGTACCTT
CAaactttttgtaattctttgTTCTTCGTCTAGATTTGAAAGTAAAATAC
ACAAACGggttttttgatttaaaaacatttacttTACTCGAGAAAAGTTC
CTTGGTtaagaattcatgatatgcaccattgcaacgTCTTcaacggaccc
aacagctgattggttgaaagtcacttattgactgattttacgtcacttac
atgatgtaatgtcagaagacattgcaatggtgcatatcatgaataccctt
aagaatattttatgtTGGATGATTTATCAAAAGTCAAGAATATCCATAAT
GCAATGGTCGATGGGGGTGTTGATGAGTTTGTTTagtatatgcttataat
taGGGTTTTTCGAATGCCTAATGTGCTCCTAGGTAATTTTCCAAGAGAAT
AAATCAATATTTCCTTGCTATTATACGAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_169:83851..90402+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050301 ID=TCONS_00050301|Name=TCONS_00050301|organism=Clytia hemisphaerica|type=transcript|length=6552bp|location=Sequence derived from alignment at scaffold_169:83851..90402+ (Clytia hemisphaerica)
GCCGAGCAGTGCTCCTGAGGTAGCCGCACCAGTAGAAGAATTGAAAGCAC
CCGAGCCCGCCCAAAAACCACCTTCACCTGCTCCAAAGCCAAGTGAAGAA
ACGCCGAGCGATGCGCCCTTATCACCACCTGCAAAAGAAGAGGAACCTGA
AGCCAAGCCCACTCCTGCACCCTCCCCTAAACCAGAAGCCACTAAGCGGC
CCATGGTACCGAAAGCTGGCTTACCGATGATGGGTGGTGCCGCCCTTATG
GCTGAAATGAAGAAGAGACAAAACAAGGATAAGGTTATTTTGCTTATGAT
CAAAATTAGGATCCATTTAGTAAAATGATTTCATTACCTTTTATTTAATG
GAAAAGTAAGTTTTAGCCACTTTTCTCACATGCCTTTTCCTCGGTAAAGT
ACCCATCTAgtgttgttttttgaaattagaaAACGACGGTCAATTCAAAC
TTTCTCTTTTCTTCTACAGCCAGAGCAACCTGCACCTCCGCCTGCTGCGA
AGCCAAAACCACCACCCGCTGCCCAAAAACCTGGTATAGGAAGTCGCGCA
GGATCTGTTTCCGGACCCAAGCCGTCACCTCCAAAGAGACCTGTCTCATT
AAAACGTAAGTGAAAAGCAGAGAGAATACTCGAAATCTTTGTGTCTTTGT
TAAATGGCCATGCTGATTGGTTGGATTTTATTTGATGTTAATAAAGCAGT
GTTAATAGTTCTTCCGTctgtctcagacggatttccttTCGAGGGAAGTA
TATAAATAGAACTTAAAAATCTGCATGATTCACTATAATAATATGTGCtt
atttgctgtgtaaaatccattttccgtctcagatGAAAAATCACTAAGTA
AAAGTTCTTGTAAGCGGAAGCGTTCTTCCAGTTTGATTCTCAACCCTTGT
AACCGGATAACGCACAGCCTACAATAGCTTATAATATATGTATTTAGGac
atttttaaatgaaaagtaCTATTGACCTTTGTTATTAGCCTTTTAGTCGA
CATGAAATAAACTGTTACAACGACACCCCTTGATCCAATTAAGGTTTCAA
CTGATAATGCAGGGTGAAGCATGTGTTCAATGTGCGAATTTAAGTCTGCA
TATCAGGGggtaaacaatcaaatcaatattCACGCACGTTCTACCCCCAG
GCTATAGGACCAGCAAAAGTAACTTAAGAGACACATGGAATTGGCTGGCG
ATTGATGTTTACCTCTACCTtgttttatgatttcttttttcgtcagttca
tttgaaaaaatcacCTTATGATGATGAAAAATAGCTCGTTCAATACACAG
ATTTCTGtgaagcccaaagggctaggaTGGATAAAAATCTGcgaagcgct
gaaattctattgtaatccATTCTCTTCTAgtgatttcctacctaaccacg
gcgcacttttcagccaaagtacTCTATCTAGTCCTTCGGACTTAATAGAT
TTGTGGTTCAATATTGTTTAAATTTGATTGAAATCGATTTTTCAGCAACG
GAAGGAAAGTCTGATGTTCCGGATGAGAAACCAAAGCCCGCGATACGACC
ACGCCTCAATACAACTCCCAAACCTTCCACTCCCAAACCGTCCGCTGAAC
CCACTGAAggttggtttcttttttttatgatttcaacTCTTTAAAGCCAG
GCATTTCACAATTGTGACAAGATTGAAAGAGATAATTTGGTTAAATCATC
CTTATGGAACCACAAATTCAATGTACCAGGTCACATTAATCGAACCGGCT
TTTTAGTCGACCTTTTTCGAATTTGCGAATCAAATGCTCATAATTTATCC
AAAATTATTCGATAAACGGCAAATATCAGTCGAACTCAATCTCAATCGAT
CTATATCGAACTAATATAGTTGTCGGATTTTTCGAACAAATGCTGTAATC
AGCCTTTGTAGAACTCGAAACGATCAATCGAGCTAATCGAATTCTCATAA
TTTTTACGATTTCCAAAAGGTTTTATTGTCGAACCATTCGATGAATGTGG
CTTGGAATGTAAAGATttgagacccccccccctagtcTCAATTCTTTTAA
GTTTAAGCAAGGATTCTGGGACAAAGTCAAATTTCAGTTCAGGGTGCGAA
GATTAATTTTGGGTACTGTGCTTTAGATCTCTGTCGTAACTTCGTATCTT
CTAAAGTTTGAAATAAtcacttttttcaacatttatgCATTTGATGAAAG
GAATCTTAAGAGatgaaaaacagcttttctgattactcaaagttcaacga
tcacttctattgaaaattcttttgtaaaaacgttgattaggtcactGAAT
GAAGGTCCATAgactcgccatacaaatcggacggtttctaaatggtttga
cgataaaaatgaaaatttgattttcctttttcgccgattactagttcaat
tttgaATAATAAGGAGCAATTTTTTACCAAtgtaaagaaattcttaacgc
catgatattaaattgattcttgtaaaactgtcagaaatcgagtaaaatca
agattaaGTTATAATTtcctcgagctctagctttccatataatggtgtgg
tcatgatgcggttatatcagtagaatcactaggaaattctgagcaagaaa
atataggtaccttttcgtataggtgaggtgtacccaaaatgtaagcccta
aaagttttcGCATAATCAggcctgaaacaaaagaattttgtcacaacacg
ctaattatgtagatttttttaactcgacataaactcccatAAGGACAAGA
GACCTAATGGCGAGccattttttcattgttttcaagaaactgtttttcca
tctctttacattcctctgatttGATACTTTAATTGGCTCCTGTGTGCTCA
TAGGGGTGAACTGCGTAAAGTATGAAACGTCAACAAAAAACAGTGATAAC
GTGTAAGCTTGCATATTTTTAAATATCGAAACCTTCTTTTCTACAGAAAA
GAAAACTGAAGAAAGCACTACCGAAGCCAAAGATGAAGGTAATGATTTCt
cactcattcattcattcattcatcgcGTTTGAAAAGCCCTTTTAATTAGA
CAGCTTAGTTAGTTAGTAACCTTACCATATAATTTTGTTAATCTTGATTT
TGGGTCAAATTAGTAAGAGCCATTTCTTAGGACCCACAGCAACATTTTCT
GGTACACTTTGAAATTTGACATCAATTGTACGTAAAATGACTTGAGGGAT
TTAATCACCTCGAAAATGGTCTTAAAACGAGGCcgtcgttgcactcaaaa
taatttatgaaacgGCCTAATCACAAACCCAGTGCTCTATACgttaattt
tcaatttatttctttttcttcatttcagaTTCTGAAGTTAAAGAATAAAT
TCATATTGAAGAAGCCGGTGGTTGGAGTAATATCGAGAGGTTCATTTAGA
CTATTGAAATTATAAAGAACAATGCTCCTTTTTGGGGCGTCCCACCTATC
CTGTCACTACTGCTGCGTGGCGTTGATTTTTTTAACGCCCATTTCAATGT
TGTTGAATACTAAATGGCCAGTATTTATTTAAATAGGGaaaagaataaaa
tgaaaaattgaaaattttatttttaattaattttttataaatataaaaag
aatAGAATTCCCTAAAAATTGAGGTGATCTTTttgtttatgaattttttt
tgttttttatattttctttgattttgaaatttgttttgtNAAATTCAATG
TACCAGGTCACATTAATCGAACCGGCTTTTTAGTCGACCTTTTTCGAATT
TGCGAATCAAATGCTCATAATTTATCCAAAATTATTCGATAAACGGCAAA
TATCAGTCGAACTCAATCTCAATCGATCTATATCGAACTAATATAGTTGT
CGGATTTTTCGAACAAATGCTGTAATCAGCCTTTGTAGAACTCGAAAcga
tcaatcgaactaatcgaattcTCATAATTTTTACGATTTCCAAAAGGTTT
TATTGTCGAACCATTCGATGAATGTGGCTTGGAATGTAAAGATTTGAGAC
CCCTCCCCCTAGTCTCAATTCTTTTAAGTTTAAGCAAGGATTCTGGGACA
AAGTCAAATTTCAGTTCAGGGTGCGAAGATTAATTTTGGGTACTGTGCTT
TAGATCTCTGTCGTAACTTCGTATCTTCTAAAGTTTGAAATAAtcacttt
tttcaacatttatgCATTTGATGAAAGGAATCTTAAGAGAtggaaaacag
cttttctgattactcaaagttcaacgatcacttctattgaaaattctttt
gtaaaaacgttgattaggtcactGAATGAAGGTCCATAGattcgccatac
aaatcggacggtttctaaaTGGTTTgacgatgaaaatgaaaatttgattt
ttctttttcgccgattactagttcaattttaaATAATACGGAGCaatttt
tttaccaatgtaaagaaattcttaacgccatgatattaaattgattcttg
taaaactatcagaaatcgagtaaaatcaagattaaGTTATAATTtcctcg
agctctagctttccatataatggtgtggtcatgatgcggttatatcagta
gaatcactaggaaattctgagcaagaaaatataggtaccttttcgtatag
gtgaggtgtacccaaaatgtaagccctaaaagttttcGCATAATCAggcc
tgaaacaaaagaattttgtcacaacacgctaattatgtagatttttttaa
ctcgacataaactcccatAAGGACAAGAGACCTAATGGCGAGccattttt
tcattgttttcaagaaactgtttttccatctctttacattcctctgattt
GATACTTTAATTGGCTCCTGTGTGCTCATAGGGGTGAACTGCGTAAAGTA
TGAAACGTCAACAAAAAACAGTGATAACGTGTAAGCTTGCATATTTTTAA
ATATCGAAACCTTCTTTTCTACAGAAAAGAAAACTGAAGAAAGCACTACC
GAAGCCAAAGATGAAGGTAATGATTtctcattcattcattcgttcattca
ttcattcattcattcattcattcattcattcattcattcatcgcGTTTGA
AAAGCCCTTTTAATTCGACAGCTTAGTTAGTTAGTAACCTTACCATATAA
TTTTGTTAATCTTGATTTTGGGTCAAATTAGTAAGAGTCATTTCTTAGGA
CCCACGGCAACATTTTCTGGTGCACTTTGAAATTTGACATCAATTGTACG
TAAAATGACTTAAGGGATTGAATCACCTCGAAAATGGTCTTAAAACGAGG
CcgtcgttgcactcaaaataatttatgaaacgGCCTAATCACAAACCCAG
TGCTCTATACgttaattttcaatttatttctttttcttcatttcagaTTC
TGAAGTTAAAGAATAAATTCATATTGAAGAAGCCGGTGGTTGGAGTAATA
TCGAGAGGTTCATTTAGACTATTGAAATTATAAAGAACAATGCTCCTTTT
TGGGGCGTCCCACCTATCCTGTCACTACTGCTGCGTGGCGTTGATTTTTT
TAACGCCCATTTCAATGTTGTTGAATACTAAATGGCCAGTATTTATTTAA
ATAGGGaaaagaataaaatgaaaaattgaaaattttatttttaattaatt
ttttataaatataaaaagaatAGAATTCCCTAAAAATTGAGGTGATCTTT
ttgtttatgaattttttttgttttttatattttctttgattttgaaattt
gttttgtttatatttttaaagaattattgtttttttatatgaTTATGAAC
TCTTTGTAAAATAATTagcactttttcacttttaccTAATCTTACTGCAA
ATTTTCAAGGtctttttgaaatgaaaaaagggTCATCAATTTCTAAaaga
ttttataaaaacttattAAAAAGACTGCCCTCGTCAACATCAGATCACCG
AATAAAAGattctgatttttgaaaatgttttgttcttttttttgaatATG
TAAATTTATTCCATTCTCTTATCTTTTTAGATGTCacctttttttctaaa
ttataaAATGCCAAGTCGCAAGTTGGAGATAATTGACTTGCtgcaaatat
atttttctatagTTATTATTGGATAATTGAGTATTTACTATAATAATCAC
AACAAACTCTCTCTGTACCTTCAaactttttgtaattctttgTTCTTCGT
CTAGATTTGAAAGTAAAATACACAAACGggttttttgatttaaaaacatt
tacttTACTCGAGAAAAGTTCCTTGGTtaagaattcatgatatgcaccat
tgcaacgTCTTcaacggacccaacagctgattggttgaaagtcacttatt
gactgattttacgtcacttacatgatgtaatgtcagaagacattgcaatg
gtgcatatcatgaatacccttaagaatattttatgtTGGATGATTTATCA
AAAGTCAAGAATATCCATAATGCAATGGTCGATGGGGGTGTTGATGAGTT
TGTTTagtatatgcttataattaGGGTTTTTCGAATGCCTAATGTGCTCC
TAGGTAATTTTCCAAGAGAATAAATCAATATTTCCTTGCTATTATACGAA
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031851XLOC_031851Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050301-exon-scaffold_169-1491911889:83851..84133TCONS_00050301-exon-scaffold_169-1491911889:83851..84133Clytia hemisphaericaexon
TCONS_00050301-exon-scaffold_169-1510915933:83851..84133TCONS_00050301-exon-scaffold_169-1510915933:83851..84133Clytia hemisphaericaexon
TCONS_00050301-exon-scaffold_169-1575043694:83851..84133TCONS_00050301-exon-scaffold_169-1575043694:83851..84133Clytia hemisphaericaexon
TCONS_00050301-exon-scaffold_169-1491911889:84320..84455TCONS_00050301-exon-scaffold_169-1491911889:84320..84455Clytia hemisphaericaexon
TCONS_00050301-exon-scaffold_169-1510915933:84320..84455TCONS_00050301-exon-scaffold_169-1510915933:84320..84455Clytia hemisphaericaexon
TCONS_00050301-exon-scaffold_169-1575043694:84320..84455TCONS_00050301-exon-scaffold_169-1575043694:84320..84455Clytia hemisphaericaexon
TCONS_00050301-exon-scaffold_169-1491911889:85346..85459TCONS_00050301-exon-scaffold_169-1491911889:85346..85459Clytia hemisphaericaexon
TCONS_00050301-exon-scaffold_169-1510915933:85346..85459TCONS_00050301-exon-scaffold_169-1510915933:85346..85459Clytia hemisphaericaexon
TCONS_00050301-exon-scaffold_169-1575043694:85346..85459TCONS_00050301-exon-scaffold_169-1575043694:85346..85459Clytia hemisphaericaexon
TCONS_00050301-exon-scaffold_169-1491911889:86797..86838TCONS_00050301-exon-scaffold_169-1491911889:86797..86838Clytia hemisphaericaexon
TCONS_00050301-exon-scaffold_169-1510915933:86797..86838TCONS_00050301-exon-scaffold_169-1510915933:86797..86838Clytia hemisphaericaexon
TCONS_00050301-exon-scaffold_169-1575043694:86797..86838TCONS_00050301-exon-scaffold_169-1575043694:86797..86838Clytia hemisphaericaexon
TCONS_00050301-exon-scaffold_169-1491911889:87179..87239TCONS_00050301-exon-scaffold_169-1491911889:87179..87239Clytia hemisphaericaexon
TCONS_00050301-exon-scaffold_169-1510915933:87179..87239TCONS_00050301-exon-scaffold_169-1510915933:87179..87239Clytia hemisphaericaexon
TCONS_00050301-exon-scaffold_169-1575043694:87179..87239TCONS_00050301-exon-scaffold_169-1575043694:87179..87239Clytia hemisphaericaexon
TCONS_00050301-exon-scaffold_169-1491911889:89258..90402TCONS_00050301-exon-scaffold_169-1491911889:89258..90402Clytia hemisphaericaexon
TCONS_00050301-exon-scaffold_169-1510915933:89258..90402TCONS_00050301-exon-scaffold_169-1510915933:89258..90402Clytia hemisphaericaexon
TCONS_00050301-exon-scaffold_169-1575043694:89258..90402TCONS_00050301-exon-scaffold_169-1575043694:89258..90402Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_169supercontigscaffold_169:83851..90402 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.97478	2.15933	0.424573	0.633281	4.71077	3.04146	4.58368	4.95827	6.08164	6.9608	5.57425	3.81886	4.70179	5.37023	5.4585	3.57061	4.19979	6.81912	4.33699	3.75483	8.66904	8.14683	6.75429	5.68595	2.71105	3.59178	7.78711	7.47925	7.56439	6.48785
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top