Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050273 ID=TCONS_00050273|Name=TCONS_00050273|organism=Clytia hemisphaerica|type=transcript|length=1207bpRun BLAST on NCBI transcript from alignment at scaffold_168:339688..362871- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050273 ID=TCONS_00050273|Name=TCONS_00050273|organism=Clytia hemisphaerica|type=transcript|length=23184bp|location=Sequence derived from alignment at scaffold_168:339688..362871- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00050273 vs. Swiss-Prot (Human)
Match: SRP54 (Signal recognition particle 54 kDa protein OS=Homo sapiens GN=SRP54 PE=1 SV=1) HSP 1 Score: 718.383 bits (1853), Expect = 0.000e+0 Identity = 335/395 (84.81%), Postives = 372/395 (94.18%), Query Frame = 3 Query: 21 MVLADLGRKITSALKSLSNATVINEEVLNAMLKEICAALLEADVNVQLVKKLRINIKTAANFEEMAAGTNKRRLIQHTVFQELCKLVDPGVKQWQPSKGKNNVIMFVGLQGSGKTTTCTKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNALKARIPYYGSYSEADPAIIAADGVEKFKNENFEIIIVDTSGRHKQQESLFEEMLQVSNAVDPDNIIFVMDASIGQACEAQARAFKEKVDVASVIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHTDDFESFKTQPFISKLLGMGDIEGLIDKVNELKLDENEELIDKLKQGVFTLRDMYEQFQNIMKMGPFSQIMGMIPGFSNDFISKGNEQESVARLKRLMTMMDSMNDTELDSPNGAKL 1205 MVLADLGRKITSAL+SLSNAT+INEEVLNAMLKE+C ALLEADVN++LVK+LR N+K+A + EEMA+G NKR++IQH VF+EL KLVDPGVK W P+KGK NVIMFVGLQGSGKTTTC+KLAYYYQRKGWKTCLICADTFRAGAFDQLKQNA KARIP+YGSY+E DP IIA++GVEKFKNENFEIIIVDTSGRHKQ++SLFEEMLQV+NA+ PDNI++VMDASIGQACEAQA+AFK+KVDVASVI+TKLDGHAKGGGALSAVAATKSPIIFIGTGEH DDFE FKTQPFISKLLGMGDIEGLIDKVNELKLD+NE LI+KLK G FTLRDMYEQFQNIMKMGPFSQI+GMIPGF DF+SKGNEQES+ARLK+LMT+MDSMND ELDS +GAK+ Sbjct: 1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKV 395 The following BLAST results are available for this feature:
BLAST of TCONS_00050273 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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