TCONS_00050248 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050248
Unique NameTCONS_00050248
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length987

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050248 ID=TCONS_00050248|Name=TCONS_00050248|organism=Clytia hemisphaerica|type=transcript|length=987bp
TATTGTTTTAACATGAAAGGATCCACCGACCCTAACACAGGCTATACTGA
ATATCTTCCACTCGATTTTGCCGGTCCCGATAATAATTATGCGTACTACC
ACCGCCCACGATTGGTCAATTTTAACACGTGTTCCGGACAAGAAACGGCC
GAACCGAGTGAAACCGAAAACTTCTACGGACAAACTTGGTTCCGACGTGT
TCGGCTTACGTTGTCCAACATGTTACTCGTCCGTGATGACTACACTCACG
CTTACACGTCCGGTAATCATGTTAAATACGGAACCGCTGGTGATTGTTAT
TCCAAATCTACGGAAGATTGCCGTAAAGGTCGTTTCAAAATAAACTTTAA
AGGAACGGGTGTTCATATGACACAACGCCAATGGGTGGCAACTGGTACGC
CCAAAGATATGGCGGAACGAATCACACAATTCCAAAACTCACCTGATTGG
ACAGAAGTTTCGGCTCATTGTGGCGGATCTTGTGCTGAATGTGAGCCTAG
TGAAGGACACATCCGTATTGAGCCTGATATCTGTTTAGCGCCAAGCATAA
AACGCACCGCCCTTGAGAAAGGCAAAAGTCGGAGACGTTGGTTCAGCCGA
ATTTACGGATATTGAAAAAGGTGAAAAAGGGTAAGACCCTGTCATATGTT
TAGTTTGAATTGTTTACAATGAAATTAACTGAAGCAGCAAAGTAGATTAT
TTTTATATTCCTTAACACAAAGAACGATTAGCCTTCCAGTAAGGGGCACT
ATGTAAAATTAAGAATCTAATTAAATTAAatccaatttaaaaaaaaatta
aatccaaaTCGAATTTTAAGCATTAtgtaaaatttcataattttNttaaa
aaaaaattaaatccaaaTCGAATTTTAAGCATTAtgtaaaatttcataat
ttttatttttaaaaatatttttttttaatcatattttaaaatttgaatcg
taaaatttgataaaattaatGGTTTTTACCACAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00050248-protein

>TCONS_00050248-protein ID=TCONS_00050248-protein|Name=TCONS_00050248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
YCFNMKGSTDPNTGYTEYLPLDFAGPDNNYAYYHRPRLVNFNTCSGQETA
EPSETENFYGQTWFRRVRLTLSNMLLVRDDYTHAYTSGNHVKYGTAGDCY
SKSTEDCRKGRFKINFKGTGVHMTQRQWVATGTPKDMAERITQFQNSPDW
TEVSAHCGGSCAECEPSEGHIRIEPDICLAPSIKRTALEKGKSRRRWFSR
IYGY
Run BLAST on NCBI

transcript from alignment at scaffold_168:223294..224563-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050248 ID=TCONS_00050248|Name=TCONS_00050248|organism=Clytia hemisphaerica|type=transcript|length=1270bp|location=Sequence derived from alignment at scaffold_168:223294..224563- (Clytia hemisphaerica)
TATTGTTTTAACATGAAAGGATCCACCGACCCTAACACAGGCTATACTGA
ATATCTTCCACTCGATTTTGCCGGTCCCGATAATAATTATGCGTACTACC
ACCGCCCACGATTGGTCAATTTTAACACGTGTTCCGGACAAGAAACGGCC
GAACCGAGTGAAACCGAAAACTTCTACGGACAAACTTGGTAAGTGAAGCT
GTGTGCCAAACGAGTTAGAAAGTTTGATATTCGCTAACACTTTTACAGCT
TAAAAATTTGTAGTTAGAGAAGCAAACCTTTCCACTTATTTCTCCTAATC
AATAAACATAAATATTCGGTATCTTATCTATCCAGATTTAACTCAACAAT
GACTTTGTTTAGAAAATTTCGCAGTGATTTCTAGTTGTAAGGTGTAATAG
AACATTAAGGGACTAAGTGATTCCTTATGGTTTGAAATCAAGAAAATTAT
TTTAATTTTTCCTCCTTTCAGGTTCCGACGTGTTCGGCTTACGTTGTCCA
ACATGTTACTCGTCCGTGATGACTACACTCACGCTTACACGTCCGGTAAT
CATGTTAAATACGGAACCGCTGGTGATTGTTATTCCAAATCTACGGAAGA
TTGCCGTAAAGGTCGTTTCAAAATAAACTTTAAAGGAACGGGTGTTCATA
TGACACAACGCCAATGGGTGGCAACTGGTACGCCCAAAGATATGGCGGAA
CGAATCACACAATTCCAAAACTCACCTGATTGGACAGAAGTTTCGGCTCA
TTGTGGCGGATCTTGTGCTGAATGTGAGCCTAGTGAAGGACACATCCGTA
TTGAGCCTGATATCTGTTTAGCGCCAAGCATAAAACGCACCGCCCTTGAG
AAAGGCAAAAGTCGGAGACGTTGGTTCAGCCGAATTTACGGATATTGAAA
AAGGTGAAAAAGGGTAAGACCCTGTCATATGTTTAGTTTGAATTGTTTAC
AATGAAATTAACTGAAGCAGCAAAGTAGATTATTTTTATATTCCTTAACA
CAAAGAACGATTAGCCTTCCAGTAAGGGGCACTATGTAAAATTAAGAATC
TAATTAAATTAAATCCAATTTAAAAAAAAATTAAATCCAAATCGAATTTT
AAGCATTATGTAAAATTTCATAATTTTNTTAAAAAAAAATTAAATCCAAA
TCGAATTTTAAGCATTATGTAAAATTTCATAATTTTTATTTTTAAAAATA
TTTTTTTTTAATCATATTTTAAAATTTGAATCGTAAAATTTGATAAAATT
AATGGTTTTTACCACAAAAT

Coding sequence (CDS) from alignment at scaffold_168:223294..224563-

>TCONS_00050248 ID=TCONS_00050248|Name=TCONS_00050248|organism=Clytia hemisphaerica|type=CDS|length=1230bp|location=Sequence derived from alignment at scaffold_168:223294..224563- (Clytia hemisphaerica)
GTTCCGACGTGTTCGGCTTACGTTGTCCAACATGTTACTCGTCCGTGATG
ACTACACTCACGCTTACACGTCCGGTAATCATGTTAAATACGGAACCGCT
GGTGATTGTTATTCCAAATCTACGGAAGATTGCCGTAAAGGTCGTTTCAA
AATAAACTTTAAAGGAACGGGTGTTCATATGACACAACGCCAATGGGTGG
CAACTGGTACGCCCAAAGATATGGCGGAACGAATCACACAATTCCAAAAC
TCACCTGATTGGACAGAAGTTTCGGCTCATTGTGGCGGATCTTGTGCTGA
ATGTGAGCCTAGTGAAGGACACATCCGTATTGAGCCTGATATCTGTTTAG
CGCCAAGCATAAAACGCACCGCCCTTGAGAAAGGCAAAAGTCGGAGACGT
TGGTTCAGCCGAATTTACGGATATTGATATTGTTTTAACATGAAAGGATC
CACCGACCCTAACACAGGCTATACTGAATATCTTCCACTCGATTTTGCCG
GTCCCGATAATAATTATGCGTACTACCACCGCCCACGATTGGTCAATTTT
AACACGTGTTCCGGACAAGAAACGGCCGAACCGAGTGAAACCGAAAACTT
CTACGGACAAACTTGGTTCCGACGTGTTCGGCTTACGTTGTCCAACATGT
TACTCGTCCGTGATGACTACACTCACGCTTACACGTCCGGTAATCATGTT
AAATACGGAACCGCTGGTGATTGTTATTCCAAATCTACGGAAGATTGCCG
TAAAGGTCGTTTCAAAATAAACTTTAAAGGAACGGGTGTTCATATGACAC
AACGCCAATGGGTGGCAACTGGTACGCCCAAAGATATGGCGGAACGAATC
ACACAATTCCAAAACTCACCTGATTGGACAGAAGTTTCGGCTCATTGTGG
CGGATCTTGTGCTGAATGTGAGCCTAGTGAAGGACACATCCGTATTGAGC
CTGATATCTGTTTAGCGCCAAGCATAAAACGCACCGCCCTTGAGAAAGGC
AAAAGTCGGAGACGTTGGTTCAGCCGAATTTACGGATATTGATATTGTTT
TAACATGAAAGGATCCACCGACCCTAACACAGGCTATACTGAATATCTTC
CACTCGATTTTGCCGGTCCCGATAATAATTATGCGTACTACCACCGCCCA
CGATTGGTCAATTTTAACACGTGTTCCGGACAAGAAACGGCCGAACCGAG
TGAAACCGAAAACTTCTACGGACAAACTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031830XLOC_031830Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050248-proteinTCONS_00050248-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050248-exon-scaffold_168-1575043694:224376..224563TCONS_00050248-exon-scaffold_168-1575043694:224376..224563Clytia hemisphaericaexon
TCONS_00050248-exon-scaffold_168-1575043694:223294..224092TCONS_00050248-exon-scaffold_168-1575043694:223294..224092Clytia hemisphaericaexon
TCONS_00050248-exon-scaffold_168-1510915933:224376..224563TCONS_00050248-exon-scaffold_168-1510915933:224376..224563Clytia hemisphaericaexon
TCONS_00050248-exon-scaffold_168-1510915933:223294..224092TCONS_00050248-exon-scaffold_168-1510915933:223294..224092Clytia hemisphaericaexon
TCONS_00050248-exon-scaffold_168-1491911889:224376..224563TCONS_00050248-exon-scaffold_168-1491911889:224376..224563Clytia hemisphaericaexon
TCONS_00050248-exon-scaffold_168-1491911889:223294..224092TCONS_00050248-exon-scaffold_168-1491911889:223294..224092Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_168supercontigscaffold_168:223294..224563 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.820822	0.755962	0.619584	0.505139	4.91966	4.32494	11.9014	15.5329	0.999109	1.28516	7.85402	4.34293	6.7328	6.01571	4.19481	17.8677	6.84653	6.73678	0	0.152177	5.73168	5.93551	6.1174	5.32393	9.3024	11.6667	2.12596	1.20117	0.40491	0.825079
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012314Pept_M12B_GON-ADAMTSs
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00050248 vs. Swiss-Prot (Human)
Match: ATS9 (A disintegrin and metalloproteinase with thrombospondin motifs 9 OS=Homo sapiens GN=ADAMTS9 PE=1 SV=4)

HSP 1 Score: 80.1073 bits (196), Expect = 2.208e-16
Identity = 53/159 (33.33%), Postives = 83/159 (52.20%), Query Frame = 1 
Query:   49 EYLPLDFAGPDNNYAYYHRPRLVNFNTC----SGQETAEPSETENFYGQTWFRRVRLTLSNMLLVRDDYTHAYTSGNH-VKYGTAGDCYSKSTEDCRKGRFKINFKGTGVHMTQR-QWVATGTPKDMAERITQFQNSPDWTEVSAHCGGSCAECEPSEG 507
            EY+ L   G   N++  +  RL N   C    S ++  +  +     G + F+++R+ L++M ++  D   A TS  H V + TAGDCYS +   C +GRF IN  GTG+ +T+  +W++ G        ++  + SPD T V   CGG C +C PS G
Sbjct: 1777 EYVTL-VHGDSENFSEVYGHRLHNPTECPYNGSRRDDCQCRKDYTAAGFSSFQKIRIDLTSMQIITTDLQFARTSEGHPVPFATAGDCYSAA--KCPQGRFSINLYGTGLSLTESARWISQGN-----YAVSDIKKSPDGTRVVGKCGGYCGKCTPSSG 1927
The following BLAST results are available for this feature:
BLAST of TCONS_00050248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ATS92.208e-1633.33A disintegrin and metalloproteinase with thrombosp... [more]
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