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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050243 ID=TCONS_00050243|Name=TCONS_00050243|organism=Clytia hemisphaerica|type=transcript|length=2221bpRun BLAST on NCBI protein sequence of TCONS_00050243-protein >TCONS_00050243-protein ID=TCONS_00050243-protein|Name=TCONS_00050243-protein|organism=Clytia hemisphaerica|type=polypeptide|length=546bp MAAPPPPNTTLATKVSLTFSCKGLLDKDLTSKSDPIIQVMTYNHQKNWKERun BLAST on NCBI transcript from alignment at scaffold_168:152411..172788- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050243 ID=TCONS_00050243|Name=TCONS_00050243|organism=Clytia hemisphaerica|type=transcript|length=20378bp|location=Sequence derived from alignment at scaffold_168:152411..172788- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_168:152411..172788- >TCONS_00050243 ID=TCONS_00050243|Name=TCONS_00050243|organism=Clytia hemisphaerica|type=CDS|length=26256bp|location=Sequence derived from alignment at scaffold_168:152411..172788- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00050243 vs. Swiss-Prot (Human)
Match: CPNE3 (Copine-3 OS=Homo sapiens GN=CPNE3 PE=1 SV=1) HSP 1 Score: 557.37 bits (1435), Expect = 0.000e+0 Identity = 288/516 (55.81%), Postives = 364/516 (70.54%), Query Frame = 1
Query: 130 KVSLTFSCKGLLDKDLTSKSDPIIQVMTYNHQKNWKEVGRTEHIMNTHNPEFTKAIEIDYFFEEVQKLKIMVYDVDNATQNLGDDDFLGRHECTLGQIVASRIYTKELTYRSGSSAG--TVTVVAEEMGQSNNEVSLKFQGQNLDKKDFLSKSDPYLEFAKDRGDGNFITVHRTNHIDNTLNPSWPEFKLDTKTLCSGNYDLQIRVKCFDYDDDGGHDLIGEYYTT---LSEMSSQQKKQWDLINPXXXXXXXXXXNSGIIILDSIKVERMSTFLEYVMSGCQINFTVGVDFTASNGNPTDPSSLHYFNPSGPNDYVQALTAVGEVCQDYDTDKQFPALGFGAKIPPNWQVSFEFPLNFNAQNPYCQGIHNIVAAYQSCVRTIQLYGPTNVAPIINHVTRFTQSVLAQHPPNTASNYFILLLLTDGVISDMADTVRAIVNASYLPISLIIVGVGNADFAQMDFLDCDEGKLRSNDGRDAMRDIVQFVPFRNFKDAPPGQLAKEVLAEVPKQVTEFF 1662
KV+L SC LLDKD+ SKSDP+ + + W EV RTE I N NP+F+K IDY+FE VQKLK VYD+DN T L DDDFLG ECTLGQIV+S+ T+ L ++G AG ++T+ AEE+ + N V + + + LD KD KSDPYLEF K DGN++ VHRT + N LNP W FK+ +LC G+ D I+V+C+DYD+DG HDLIG + TT L E S +++ IN KK++KKKSYKNSG+I + ++ TFL+Y+M GCQ+NFTVGVDFT SNG+P P SLHY +P+G N+Y+ AL +VG V QDYD DK FPA GFGA+IPP WQVS EFP+NFN NPYC GI IV AY+SC+ I+LYGPTN +PIINHV RF + Q TAS YF+LL++TDGVI+D+ +T +AIVNAS LP+S+IIVGVG ADF+ M+FLD D G LRS G A+RDIVQFVPFR F++AP LA+ VLAE+P+QV +F
Sbjct: 8 KVALNVSCANLLDKDIGSKSDPLCVLFLNTSGQQWYEVERTERIKNCLNPQFSKTFIIDYYFEVVQKLKFGVYDIDNKTIELSDDDFLGECECTLGQIVSSKKLTRPLVMKTGRPAGKGSITISAEEI-KDNRVVLFEMEARKLDNKDLFGKSDPYLEFHKQTSDGNWLMVHRTEVVKNNLNPVWRPFKISLNSLCYGDMDKTIKVECYDYDNDGSHDLIGTFQTTMTKLKEASRSSPVEFECINEKKRQKKKSYKNSGVISVKQCEITVECTFLDYIMGGCQLNFTVGVDFTGSNGDPRSPDSLHYISPNGVNEYLTALWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFSPIINHVARFAAAATQQQ---TASQYFVLLIITDGVITDLDETRQAIVNASRLPMSIIIVGVGGADFSAMEFLDGDGGSLRSPLGEVAIRDIVQFVPFRQFQNAPKEALAQCVLAEIPQQVVGYF 519 The following BLAST results are available for this feature:
BLAST of TCONS_00050243 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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