TCONS_00050242 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050242
Unique NameTCONS_00050242
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050242 ID=TCONS_00050242|Name=TCONS_00050242|organism=Clytia hemisphaerica|type=transcript|length=1324bp
ATTCTCGACTCAATCAAGGTGGAACGAATGAGTACTTTCTTAGAATATGT
CATGTCAGGATGCCAAATTAATTTCACTGTCGGCGTGGATTTCACGGCGT
CGAACGGTAACCCGACCGATCCGTCTTCACTTCACTACTTCAACCCGTCG
GGGCCGAATGATTACGTACAAGCACTTACGGCTGTCGGGGAAGTTTGTCA
AGATTATGATACGGATAAACAATTCCCAGCGCTTGGTTTTGGAGCTAAAA
TTCCTCCCAACTGGCAGGTTTCATTCGAGTTTCCACTGAATTTCAACGCA
CAGAACCCGTACTGCCAAGGTATCCACAATATAGTAGCAGCATATCAGTC
ATGTGTCAGAACAATACAATTGTACGGACCAACCAATGTGGCGCCTATTA
TAAATCACGTGACACGATTCACCCAATCAGTGCTGGCACAACATCCGCCA
AACACTGCATCGAATTATTTCATCTTGTTACTGTTGACTGACGGTGTGAT
TTCTGACATGGCGGATACAGTGCGAGCGATCGTGAACGCGTCGTATCTTC
CCATCTCTCTCATCATTGTCGGTGTTGGGAACGCAGATTTTGCGCAAATG
GACTTCCTCGATTGTGACGAGGGAAAacTTCGCAGTAATGATGGTCGTGA
TGCAATGCGAGATATCGTTCAATTTGTacctttcagaaatttcaaagatG
CGCCTCCCGGTCAACTTGCTAAAGAAGTATTAGCGGAAGTACCCAAACAA
GTAACGGAATTCTTCAAGTTAAGCGGAATTCCTCCCTtgcaaccacaaca
acaacaaccactcAATTTCCAACCCACAATTTGAACGAAAAATCTCACAT
TCTGTCCCTATCCGTAGACTTATAGGGTATTTATTTTCCTGGCAGAGAAA
ACATTACGGCATGGTTTATTTTTTATACCGCaactttttatcatattttt
taaaaatgaatccTTTGTTGAAATGtggaatttaatttatttcttaaaaa
ttgtaGATATATATAACCTTGTTGCCTTGTTAACTTTCAGCACTTCTTAT
TTATACCTGGAACCTAttggAGTTTCCAATATCTTGGGAATGGGTCAACT
TATTATACGTAGCGTCTACTGAAATTGGTAAAAAATCTTTCTCCGATTAA
AAGTTTTGCGTGTTTTCGAATTctccaaaacaaaaaagtaaggcaaaaaa
ttttttgtgatCATTTCAGTTTTTGCTCACGACTTTTGAAATCGAATGGC
TCTAAAGAGTCGTCTCCCAAATAATAATTGtagtttcatttaattttttt
ccctttaaatctaatttctagtca
Run BLAST on NCBI

transcript from alignment at scaffold_168:152411..166097-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050242 ID=TCONS_00050242|Name=TCONS_00050242|organism=Clytia hemisphaerica|type=transcript|length=13687bp|location=Sequence derived from alignment at scaffold_168:152411..166097- (Clytia hemisphaerica)
ATTCTCGACTCAATCAAGGTATGTTTTTAAGAACTTTATCTTTAAAAGAA
CCAGGCAGTTTGGGACAATTTTGTTACTGTAGGTTACTGTTGTATGAAAT
TTTGTTGGCCTTCTTTCTGATTTTCTGTGGAACCTTACCACTATTTCTCA
AGATTTATCTTAAATGCAAGTTTGAATAAAAAACCCGGTATATGTTTCCT
GGTTAGCCTAAAGTTAATATTTTATANGAAATTGTTGTCACGGGTACTAA
AGAATGGCCCCTTACGCTACAGTAGTAATTAAAACAAACAAACAAACCAG
AAACCACAAAATGGTTTTTATTTGTGTTTAGATTGCTGTTTATGACTATG
ATGAAAATGATGATTGCGACCTGATTGGTCACTTCCACACCACTTTCACT
GAGCTCTCCTCCTGTGATGGCCAGGTACCCATATTCATTCCATTTGGGTT
GTTTTCTCACTCAATGTAGGTCAAATGTTTTGATTATGACGATGACGGGG
GTCATGACTTAATAGGAGAATATTACACAACACTATCTGAGATGTCCTCC
CAACAAAAGGTATAATTACAATAGAATATTGATTCACCAATATTTACGAC
CGCATACTTGATTGGACTCCTCTTGAGAATTTCATTGATTTTCCCGATGT
GAATTGACATGGAATTAGCGAGTTTATGTATTCGAGATAAAACGAAGGAG
ACGGCATAAAGCAAAGTTGACATGTTACCAAAACCACTTTGCTCGACGAC
GGTATAAACACCAAAATACCGTCACCTAAGCAAGGGCGATATAGAGTCGT
ACATCCTGGTACATCAACTATCGACTTTGTTTCGTGTTGACACTTACCGT
CGCCGTCGATATCCTCCGATACATAAACTCGTTGTTATAAATGCGGCGGA
TGGATAATTACAGGCTTTGTCGGTTATTAAGTTTTATCTAATGTTTTGCT
GATCCGATACCTTGCAACATTTTCATCCGACGTTACTATACTATATAATA
TGCGTTAATTTGGAAAATTCTTCTTCTTTTCTTTGTTTTTCTTTTACCCT
TCATTTCTATTTTCCGTTTTAGAAACAATGGGATTTGATCAACCCCAAGA
AACAAAAGAAAAAGAAGAGTTATAAGAATTCAGGAATAATCATTCTCGAC
TCAATCAAGGTATGTTTTTAAGAGCCATATTCTCTAAAAGAACCAGGCAG
TTTGGAACAATTTTGTTACTGTAGGTTACTGTTGTATGAAATTTTGTTGG
CCTTCTTTCTGATTTTCTGAGAAACCTTTCCACTATTTCTTAAGATTTAT
CTTATATGCTACAAGTTTGAATAAAAAACCGGTATATGTTTCCTGGTTAG
CCTAAAGTTAATATTTTATTGATTTTTGACTTTGTGAGGCTTTCTTATTG
CAGATCGCCAAATAGAAATTTTGAGTTCGAGTAAACATTTATCTTTTATT
CATCCAGTTTTGAGATAAATATTAAATGAGAGTTTGAGCGCGCTGATTGG
CTAAAGCAAAAAATCGCACCAAAATCAAGCGCCAAATAAAATCATATTCG
ATCATCAGATCATCACATTCGCCATATCCGTTTAGAGCAGAGCGTGGTAT
GCGCAGAATGAAAATCTGTTATGAGATTATACAAAGACTAATAATCCAAG
CTGATATTGAGAAGTTCGAGAAATACTTTTGTACTATTCTCTGTTTTTAC
CAATATTTATTATAACTTCCAAACACACAGAAGATCGTTGATCTGAATGC
TGCAAATGATAAGGCTCTTAATCAAAGTCTTGAAAGGTATGAATGAAACA
CTCCCTTTCTTTCAAGGGATTTACATAGGCTACTGACAATTCCAGGCTTA
CACAGTGATTGGATATTGGGATTGTGAAACTTTTCCTGGTGTAGCCAGAG
CCTTATTTTTGTGACGTCAGCCCAGAAAATTTGCACTTAAGAAAATCTTT
TGACTTAATTTTTGCCAAAATGCTTAATGTATTATTTTTATTCCTGAAAT
TAGGAATTTCTCCAACATGGCCAATTAACAGTTTTTCCAATAATTAGTTG
CAACTCTTGAATAAACGAGGCAAATATCACACTTTATGAGTTTAGAACCT
TCTTTTAAGGCCCTGAGAGCCCAGCCAAGTCGAGTGAAAGATTTTAAATT
TTCAACATTTGATCTTTGTTAGTAGTTTTTTGACAAAAATGAAATCCCTA
AAATTCTCCCAGGCTGAGTAATCAAGGCTAAGTTTATCAAAAATGAGTTT
TGTGCTATATTTAGTCCGCTGTTATGGAAATACGATCAAGGTCATATGAG
TTTTTCTTGGGTTTATTGACACTTGACCATGAGTACTTTCCCATGTGACC
TTCGTTGCAACTTGTAATTTTTCTCTCAATTCAGACTTTTACACTTGGCA
AAATGAAGCAAAATTTCCAACCAGCCCTCAAGCCTTCATGATTGATTTTT
ACGACCCTAAATTTTTGGGTTCTTAGTTTTTCACTAGCCTTCACTATTCT
CTGCGAAATATCCAAAAATGAAGGCAAACAAAATTTCATACTATTTCCAC
CTGCCTGGTTCTTAGAGAATATGACTCCGTCCCACTTTACTTATTAAAGT
TGAGAAAATATGTTTTTTTGAATGTGTTAATGATTGTTATCGTACGGTAT
AGAGTACAATATAATGTGGCATATATTTGAACCTGTTTTATCGTAAACTC
AAATCTCAAAATATGAGACCCACCATTTTTTTCGGAGTAGCATTTTTATC
TCTTGTTTTTCCTCTCTTCACTATGTATTTCGATGATAAAACATTTTAAA
AAAAAATCGAATGGTCGTTAAAAAGATATTAAACCATTCTTTTGAAACAT
TTCCTAGCATAAAATTGTACAACTACGATCTAAATACGTTACCAGGCCCC
TTATTGTTAACCTGGTTTCGTATTTTTTACGTCTAAAAGATGAAATACGG
GGAATATTTTTTCTCCCTTAGCCGATATAATATTGCTCATATTTTTCAAG
TTAAGGATAAAATATATGATAAAAATTTTTGCCTGTACTGTAAGAATCTT
GTAAAGAATCTTTGAAAATTGCACCAGAAGTATTGACTTTTCCAAATTTT
TCTTGTATTATAGTCCTCCTATTGTAAACGGGCGGTTTTAGAAGCATTAA
TTTTAGTCACATGTGATCTTTTTACAGATTGAGTGTCCCTCTCTTTCAGG
TTTTAAAGAATAAACGAAACGTATCCTTCTCGTGCGACTTCTCATTATTA
TTAATTATGTTTTTCAGGTGGAACGAATGAGTACTTTCTTAGAATATGTC
ATGTCAGGATGCCAAATTAATTTCACTGTAAGGAAAATTTCATAATTTCT
TGTTTCACCTCAAGGACTCAGATGAATGCCTTCTTTTGGACGATACATCT
GACTAGTGCATAATATTTTGTGGGTTTCTAAGAAATCTGCCCACATGCCA
GACCGCGTCAATACAATTACAATTACAACTAGTACATAGCTTACACTAAC
ATGCCACCGCAGCAATATAATATTTAAAAAATTCTATAATAAATTGTATA
ATCATAACAATGTCAATTGCAAGATTATAAGAANNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNACGCGCGCGCGCGCAAAGATTCGAGA
TTCCTGTCCAATATCCTTGCGTGAAGCTATGAAGGCCTCCTCACTCGCTA
CGCTCGTTGCGGGGGCAATTACAACATTTGTATTTCTCGACCTTGATCAA
GCTGACAATTTTGAGATAATTATGAGAATTTGATCAAAGCTCAATTATTG
ATTAATATGACGTGATTTCTTGTTACTTACAGGTCGGCGTGGATTTCACG
GCGTCGAACGGTAACCCGACCGATCCGTCTTCACTTCACTACTTCAACCC
GTCGGGGCCGAATGATTACGTACAAGCACTTACGGCTGTCGGGGAAGTTT
GTCAAGATTATGATACGTAAGATATTTTTATAAGTTCACTTTTCCACCAT
TTTGAGATAATCAACTTTGAAGATTCCATTTGCTGATAACTTTGGAATAG
ACAATGAAAATTCATACTTGTAACATTATAAGGGTACACCTGTATTTTTC
TTGTGGTTAAAAAAACTGACATGCTGAATTATGACGTATGGTCTTAACTG
TAAAGAAAAAAACGGACCTAAGACTGATTTGAATGAATACACGGTGGTTA
GTGGGTGGTTGAGATTCTTAGGGTAATAACTGCAACTCAGTATTTTTACG
CCCTTTTGCAGTTTTGATGTTTCATTTCGAGAATCATCAATTAGGCCACA
TACATCTTTTTCAGAGTGCAGAATACTGAACAGGACAGTGTTTACCTCTC
TATTTGGTGAATTCTTTGTTTCTCGTATTTTTAGTCAAACATTTATATAC
TTTTTTTTATGTTCAGGGATAAACAATTCCCAGCGCTTGGTTTTGGAGCT
AAAATTCCTCCCAACTGGCAGGTAATAATCGAGTAACTAACTTTCAACCT
ACTTTAAAGGATACTTTCGCGGAAGAAACTTTCGCAAGTTCGCAATTTTT
CTGCCAAATTGCGAATATTAATTTCCGCGAAATATGGTCGAGTTTGTCAT
TCGCGAAAGTTATCTCTCGCGAAATATACCGGGTGCGCCACAAAAAAGTT
TGTCTCTTTGAAAATAACTTTCTCGAAAGCTAAAAATTTTAAAAGAACCA
TTCCTCTTTCATTGGAAAGAAGAAAGATAAACTTAAATTCTGATGGGTCA
TTTATCAAATTCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTAATTACATGATACATCAGTATT
TTCACTTCAGTCATTAAAAATCATAATCAGCTGTCTAAATGACCTTTTGT
TATATAAAGGAAGATTGAATTTCAATGAAAATAAGAAAATTCATCGAAAA
AGCCCAAAAATCTGTTAAAATTCATAAAAATACATCAAATATGGGTTTCG
AGGTAGATCCAGTCTTACATAGACTTTATCCAGTCAAGCACCAAAAACCT
GAGGAAAATTTCGGTAAAAGTAGATTAAATTGATTTTGATGAAGATTTTA
AACCCTTTTGACCCTTCAGTTTCAAAATTTATGTGTTTAGTTACTGAAAA
ACGGTCTTAATCATGTAAAGGCTAATGCGATTGCCAAATTTAAAATAAAA
ATTTGATAGGTCGATTTTTAACGTTTTCGAGCACTTTCTGAAAATNGACT
TTTTTATTCAATTGAGCATAACTTTTGATCTAATGAATCGAATTTAATAA
ATGACCCATCAAAATTTAAGTTTATCTTTCTTCTTTCCAATGGAAAAATA
ATGGCTCTTTTAAAATTTTTAGATTTCGAGAAAATTAGTTTCAAAGAGAG
AAACTTTTTTGTGGCGCACCCGGTAGTTGAATGCGCCTTTTGCAAAGTAA
ATTCCCAAAACTTCTTGATTTTTTCGTCTAGCGAAAGTTTCTTCTTTTAA
AGTACTGTGAAAGTATCGTGTCATAATTTCTATGCTCATTTTTTCCTCTA
AAAAGAGAGTATTAATTTTTAGTATTTATCTATATTTTCTGATCTTTTTG
TATTGCTTTTCATTTTGAACTTTCGATTCGTGTTGAAACTTTTTGCAACT
GTCTCTCACATTCAGTTAGCTTTCAGTCTGTAAAGATCCGTTTAAATTTT
TTCACAGACTATTCTTATCTTTGACGGGAATCTAAAAAATTAGTCTTAAT
TTACTGCCAACTCTTCTGCTCTTATCTGAGATGGTGGCTGACATTAAAAA
AGATAGCTACTAGTGAGTTGTATGGAACTAATTCCTATATAGGGCTATGA
CAAGAAATATTTGGCAAAAATACCCATTAAATCTACCATCTTGAATAAAC
CATTTCATAAATAAAACATTATTTATTTGAAAGTTAGTTGAGTTGTTTGA
AAAAATGTTGACAAAATTTTTCATACAAAGTAATTTATGTAACAAAGAAA
ATTCACGGATTATTCTCTTGTTGTGCGTCCTGAACTCGCTGCCGTCGTCT
GAATGATCGAGCCCAAAAGTTTCGGATCTTCCCATAGCACGATAAATAGA
TTATAGGGTTTGCTGTGACGCAAAGGTTTATTAGAATTAATTTAATGAAA
ATGATCCCTCTCGATGTTAAAGTTTCACTAGCAACAAGAAAAGATATTGT
AATTATTGGTAATAGAAAAATGCAGGTCCAGAAATTCACTTTGAAGACGT
CTTTAATACCACGCTTTAGAACAGCCAATTTATCCAATTCTTCCGCTTGA
GTTCCGTGTAAATTGGTCAAGTTTTGAAGGCGCTGTTCGTTTTCCTGTCT
ACAATGTATTGTCTTCTTGCCTAATATAAGCATGATAGCGCATGCGAGAG
TGCGTATTGACGCGGAGTACGCTATTACGGTACGGTTTGTGAACGCCATA
GAATTGCCCAGAATTTTGTTTGTGACATGACCAAGGTAAAAGGCGCACCA
TAATACAGTAGCGTTAACAAAAGCAGGCGAGAGAAATACAGTGACCAGTT
TTTTCCTTGTCACCAAGACATGATATCTTAAGCAGTATTTAACTGCTACC
CATCTATCGATTGAGATCAGAGTGTTGCTGATCATAGATAACGTGTTCCA
TAAGTACGTTAAGAAAGTCATGAATGTTAGGAACTGCTTGTTTTGTTCGC
CTTGTCCGTGTATTCTCAAAGCGTCAATTGTAATCGTCATCGTTGTTAAA
ACATATAATATTTCGATGATTGACATCAAACGTATCAGTTGGTATTGGTT
GTCTCGGAGTCGAGCTTTGTAGATTGCATATTGAACTGCCAGTTGAAGGA
GAAGTGTCATGCATTGTACAGATAAGAAGACCATGGTTACATTGGCGCTG
TATTTGTTGGCCGGTTGATTTGAAATCGTTAAGTTGCTCGAATTTGACAT
TCTTACTATCTCGCAAGTGTCTTTAAAGTGAAAATACAATTTCTTCTGAA
GTTGTCCCTACACCATCTCTCTTACTTCTGATAATTCTTTCTAGTATTTG
TTTCCTTTTTTTTTAAAAAGAATTCGTTCGATGGGACGGTATCAACCCTA
GCCCCAATCTTTTGTTAATCGATCTATTTTCTACCTATTTTTTGTGCTTG
GCGTGAGAGATGAACTGATAAATACCATTATCTTTTGCACTTTTTTCAAA
AGGAAAGGAAGAAATTGTTTTTTCGTTGTTATTTTAATGTTGCAAAATCA
TGCCAATCTTATTTTTCTTTTTCTTCGTGTGAAAAATGCTTTCTAGAGGA
CTTGGAAGTGATCTAATAAATTAAAAGCAAAACAAGAAACAAAGTTGGGT
TTAAACCGCTGACGGAAAAAAATGTATTTATGTATTTGCATTTTTGAGGA
CGGTAGAGTGACTGAAGCGATTTGGAGTAACCCACAGTTCTGACCCGCAA
AATCGGGGACAGTAAAAGTGCTAATTTATAGTCGTCCTCAGCTGGTCAGG
ATCTAGTCAAATTAGAACCTTACCTTACCGTCTCCGTCACAGGAAAACAC
ACATACACAAACTCGGTAATAAGTAATAGCCGAAAACTAGAGTTGAATCT
CCTATGTAGAATTTAAACCCACTTATTTCCTACATTTATTTCGCGGTCCG
AGTGGTTCTCGTACAAATGCTGGATTGAAAAAAACATTTACCACGAATTC
AATCCATCATCCTAAAGTCGCGCAAATTTCACAAAGCTTTACCTTTTCTT
CCTTGATAAAGGTTGAAGATTCGAATCACTCCTTTGAGATTTTAAATGGT
TTTTAAGCATATTTTATTTGTTTCAGGTTTCATTCGAGTTTCCACTGAAT
TTCAACGCACAGAACCCGTACTGCCAAGGTATACTCTTACGGGTTCATTT
CTGCTTTCAAAAATTTAGTTCCAATCTTCCAAGCGGAGTTGATGCTAATG
ATTCAGACATTCGGCGCGTTTCTTTTTTTTTTTGAAAAACTGGGTATTAA
AAAACTTCTTCTATCTTGCAAACACTCTTTTTTATAAGAACAATGCTGAG
CCCGGAATGACGGAATTTTAGGCAAATTGAAGGATCGAAATAGTAAAATT
AGTGTAAAAAGGCTGTATGTTGATCCTCCTACACTGATATGCAACGAAAC
ACTCTTAAAAGCACATTTTTGTACGGTTTAGGTATCCACAATATAGTAGC
AGCATATCAGTCATGTGTCAGAACAATACAATTGTACGGACCAACCAATG
TGGCGCCTATTATAAATCACGTGACACGATTCACCCAATCAGTGCTGGCA
CAACATCCGCCAAACACTGCATCGGTGAGTGGGCTCGATAGAAGTTTTAC
TTTGTCACTGGCTATTTTTCTTTGTCACTGGCTATTTTTCTTTGTTTTCT
ACTATAATGCCCTACCCATTTTCTATTCAATATATAGCCGGGTCATCTAA
GAAAGGGATTAGTATCGTAAATTGTCCGGTACGTTTCGGTACATTTCGTA
TAAATTGTATCCTATTTACAAGGATTTACACCCAGCCGTTAATGCCCTTT
AAATTTAAAGTTTGAGGTGTAGTTAGCCTTCATTTGAGATTTTTAGATCT
GTAAAAGTTTTCAAAAAATGTTTTAAATATTCATAATCAGCAAGCGCAAA
TTCGTAATTTAATTCAAACTCTATCAAAATTCATTTGCATGGTTGTAATT
TTGCCCCTCATTTGAGGAGGGCTTTTGTAACTATTGACTGGAAACATGAA
ACACGTATTTGTCCTTTTGAGGTAAATTAGGCTCACAGGTATATCTCAGA
AAAAATTTCAGAAGTATTATTTTTACCCCATAGAATTATTTCATCTTGTT
ACTGTTGACTGACGGTGTGATTTCTGACATGGCGGATACAGTGCGAGCGA
TCGTGAACGCGTCGTATCTTCCCATCTCTCTCATCATTGTCGGTGTTGGG
AACGCAGATTTTGCGCAAATGGACTTCCTCGATTGTGACGAGGGAAAGTA
AGTGATCTTTGTTGTATTTCTTGCTTTTGAACATTTTATTTATGAAGAAT
TTTTACTCCCCATAAACGTCAACAGTGAACGGGCTGAAACAAATATCGTT
TTTCTCCCTTAATTTATTTTTAGATTAAGTTTTTGGACCTACCTCCGGGT
ACCCCGATGGAGGTTCTATAAATTAACCCATGTCCGTTCGTCCGTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGGTAATGCCCA
AAATGTGACGGAGCCAGATTTTTAAGGAAAATTTTTTTGGGCAAATTTGG
GCCAAAAACAGCTTAAAAGGTTTTTTGGGCCTGAATGGTTTTTAAACGTA
ATTGGGGAAATTCCTTTTTACCATTTTACATTATTCAACACACAAGCTTT
ATTTTTCCATTCTGAATTGTTGTACAATTATTGTCACTTTTTTCTTATTT
CCATCTGATGTTATTCATTAGGTAGGTCCATTCAGCATGTTGCTTGCTTT
TAATTACTCCAGCGCCAGTTTAGATGAGATAAAGTTGAGATAATATGCAC
GCTTTAAAGATGACAGTTTTTACTTTATTAATCGGTCGTGATAATTCTTC
CAATTTTTCAGACTTCGCAGTAATGATGGTCGTGATGCAATGCGAGATAT
CGTTCAATTTGTACCTTTCAGAAATTTCAAAGATGTAAGCTTTCAACCAA
TCATAGTTGGTTATCCATCGCTGGATGGCTTGTCCTAGTCTCTTTTAAAC
ATGGGTACATCTTTGAAACGGGAGTGCAACTGCGAAAAAAGGGTTGTATC
TCTGAAACCATAAAATGTGAGAAAGACCTTTATCTCTTAAATATGGCTGT
GTCTGTGAAAGTTGATAACAACGATAGAACTAGAGGGTTCACATTTTTTA
AATCTTTCCCCGCGTGAATATGGGCGCTTAGATCTTGCAATGGTTTAAAA
TCTTTCTTTCAGGCGCCTCCCGGTCAACTTGCTAAAGAAGTATTAGCGGA
AGTACCCAAACAAGTAACGGAATTCTTCAAGTTAAGCGGAATTCCTCCCT
TGCAACCACAACAACAACAACCACTCAATTTCCAACCCACAATTTGAACG
AAAAATCTCACATTCTGTCCCTATCCGTAGACTTATAGGGTATTTATTTT
CCTGGCAGAGAAAACATTACGGCATGGTTTATTTTTTATACCGCAACTTT
TTATCATATTTTTTAAAAATGAATCCTTTGTTGAAATGTGGAATTTAATT
TATTTCTTAAAAATTGTAGATATATATAACCTTGTTGCCTTGTTAACTTT
CAGCACTTCTTATTTATACCTGGAACCTATTGGAGTTTCCAATATCTTGG
GAATGGGTCAACTTATTATACGTAGCGTCTACTGAAATTGGTAAAAAATC
TTTCTCCGATTAAAAGTTTTGCGTGTTTTCGAATTCTCCAAAACAAAAAA
GTAAGGCAAAAAATTTTTTGTGATCATTTCAGTTTTTGCTCACGACTTTT
GAAATCGAATGGCTCTAAAGAGTCGTCTCCCAAATAATAATTGTAGTTTC
ATTTAATTTTTTTCCCTTTAAATCTAATTTCTAGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031827XLOC_031827Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050242-exon-scaffold_168-1575043694:166080..166097TCONS_00050242-exon-scaffold_168-1575043694:166080..166097Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1575043694:162771..162830TCONS_00050242-exon-scaffold_168-1575043694:162771..162830Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1575043694:159882..160015TCONS_00050242-exon-scaffold_168-1575043694:159882..160015Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1575043694:159377..159431TCONS_00050242-exon-scaffold_168-1575043694:159377..159431Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1575043694:155820..155871TCONS_00050242-exon-scaffold_168-1575043694:155820..155871Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1575043694:155374..155516TCONS_00050242-exon-scaffold_168-1575043694:155374..155516Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1575043694:154701..154864TCONS_00050242-exon-scaffold_168-1575043694:154701..154864Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1575043694:153314..153386TCONS_00050242-exon-scaffold_168-1575043694:153314..153386Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1575043694:152411..153035TCONS_00050242-exon-scaffold_168-1575043694:152411..153035Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1510915933:166080..166097TCONS_00050242-exon-scaffold_168-1510915933:166080..166097Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1510915933:162771..162830TCONS_00050242-exon-scaffold_168-1510915933:162771..162830Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1510915933:159882..160015TCONS_00050242-exon-scaffold_168-1510915933:159882..160015Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1510915933:159377..159431TCONS_00050242-exon-scaffold_168-1510915933:159377..159431Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1510915933:155820..155871TCONS_00050242-exon-scaffold_168-1510915933:155820..155871Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1510915933:155374..155516TCONS_00050242-exon-scaffold_168-1510915933:155374..155516Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1510915933:154701..154864TCONS_00050242-exon-scaffold_168-1510915933:154701..154864Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1510915933:153314..153386TCONS_00050242-exon-scaffold_168-1510915933:153314..153386Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1510915933:152411..153035TCONS_00050242-exon-scaffold_168-1510915933:152411..153035Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1491911889:166080..166097TCONS_00050242-exon-scaffold_168-1491911889:166080..166097Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1491911889:162771..162830TCONS_00050242-exon-scaffold_168-1491911889:162771..162830Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1491911889:159882..160015TCONS_00050242-exon-scaffold_168-1491911889:159882..160015Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1491911889:159377..159431TCONS_00050242-exon-scaffold_168-1491911889:159377..159431Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1491911889:155820..155871TCONS_00050242-exon-scaffold_168-1491911889:155820..155871Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1491911889:155374..155516TCONS_00050242-exon-scaffold_168-1491911889:155374..155516Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1491911889:154701..154864TCONS_00050242-exon-scaffold_168-1491911889:154701..154864Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1491911889:153314..153386TCONS_00050242-exon-scaffold_168-1491911889:153314..153386Clytia hemisphaericaexon
TCONS_00050242-exon-scaffold_168-1491911889:152411..153035TCONS_00050242-exon-scaffold_168-1491911889:152411..153035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_168supercontigscaffold_168:152411..166097 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.55744	3.54824	5.10904	8.77495	0	0	0	0	0	0	0.188108	0	0	1.71397	3.24408e-08	1.29697e-05	0	3.3807e-06	0	0	4.15767	2.74141	6.4756	2.53674	0	0	2.33363	5.85512	2.86246	4.28313
Blast
[Close]
BLAST of TCONS_00050242 vs. Swiss-Prot (Human)
Match: CPNE2 (Copine-2 OS=Homo sapiens GN=CPNE2 PE=1 SV=3)

HSP 1 Score: 330.872 bits (847), Expect = 8.032e-107
Identity = 154/256 (60.16%), Postives = 195/256 (76.17%), Query Frame = 1 
Query:    1 ILDSIKVERMSTFLEYVMSGCQINFTVGVDFTASNGNPTDPSSLHYFNPSGPNDYVQALTAVGEVCQDYDTDKQFPALGFGAKIPPNWQVSFEFPLNFNAQNPYCQGIHNIVAAYQSCVRTIQLYGPTNVAPIINHVTRFTQSVLAQHPPNTASNYFILLLLTDGVISDMADTVRAIVNASYLPISLIIVGVGNADFAQMDFLDCDEGKLRSNDGRDAMRDIVQFVPFRNFKDAPPGQLAKEVLAEVPKQVTEFFK 768
            IL S K+ R  +FL+Y++ GCQ+ FTVG+DFTASNGNP DPSSLHY NP G N+Y+ A+ AVG++ QDYD+DK FPALGFGA++PP+W+VS EF +NFN  NP+C G+  I  AY +C+  I+ YGPTN +PI+NHV RF      Q    TA+ YFILL++TDGVISDM +T  A+V AS LP+S+IIVGVGNADFA M+FLD D   LRS+ G +A RDIVQFVPFR F++A    LAK VLAE+P+QV ++FK
Sbjct:  284 ILRSCKINRDYSFLDYILGGCQLMFTVGIDFTASNGNPLDPSSLHYINPMGTNEYLSAIWAVGQIIQDYDSDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCSGVDGIAQAYSACLPHIRFYGPTNFSPIVNHVARFAAQATQQR---TATQYFILLIITDGVISDMEETRHAVVQASKLPMSIIIVGVGNADFAAMEFLDGDSRMLRSHTGEEAARDIVQFVPFREFRNAAKETLAKAVLAELPQQVVQYFK 536
The following BLAST results are available for this feature:
BLAST of TCONS_00050242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CPNE28.032e-10760.16Copine-2 OS=Homo sapiens GN=CPNE2 PE=1 SV=3[more]
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