|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050220 ID=TCONS_00050220|Name=TCONS_00050220|organism=Clytia hemisphaerica|type=transcript|length=1360bp
aaatttgttttgataacttcaccaagtttataaatcatactttctgtcat
aacatgtcatgataactttcactgatagcatgTCCTGCTGCCTAACTGCC
TATTACCTGATGGCATTAACAAATAATGAGTGTTGTAACTTGCGGCGCAA
GTCACGTCAAACGCTTcattgttttgccactaattttggtcttttttgtt
ccagacattcgcgtgtgctccactacagatttttttcatatttcaattta
aaagtctactcagtgcaaaagagaaatcatgtgttttttaatacgccgtt
cattagctcaaatcaaatgacttagGAGGTttagtgaaatggtggccgaa
ttgccgtcccatgttttgtcagatagttccaagttagagcagttgacagt
atttttacatacaattcaatatggcggatgaaAAGGCGAAAAGGTTTATT
CAGAAAGTGGATCTTAGTTGAAATCCAATTCCATTGGCCTTAGATagatt
tcataggaaaatatACAAAACTAATACAAAAAGATatcattaatataaaa
cttaattGGCATTATATCAAAGTGTACTCTTGGGTACTTAATAAGCATCC
CCCACCTGCTAATTAATGGACAGGACATCCATATTCCGGGGCTTAGTGGT
GTAGTGGTCAATTCCCACTGTAGTATTagggttcacttggcaagtgaaca
taCCTTCGAATTACTACTCTGATACAAAAGTGTGGATGATATGCCAGCCA
TGGTGGTGTGTGGTGTCACTCATCCCCTTCTGCATCTGGGACAAGCTATT
AGCTCTTCTGCACAGTTCGAGTGTCACCACTATGCATCATGGTATCTGCG
TCTCGTTTGCACAGAACCAGTGGTGTCTGGACAGCGATAAGCGTTCCAac
ttgaaaaaggaggaattcctactCCCAGTGGGGAGGGCCCATATTCCAGC
CCCAACCCTCCCCATCTTAttactttttgggaaaatgtttttgaagttct
ctcttttgtcctaattctgctgtactTTCCTCCTAGGAATCCTTTTTtgt
catctcttagaacaagcactgcAAATAACCATGAAATTAGATGAAACTAG
GATGAAAAATCAGCATTGAAGGTGCAggaataatccttattcggatGGTA
GTAAATTATTCTTCTGGGAATAGCACTGCAAAATGAtgttttatatttaa
aattattattaataATTAACTGTAAGCATATTCATAGTGGGCACCTCCCC
CTGGATCCTAGGGGGGTtgaggattttcagatttttaaaaataggtgggg
gttgggttgatgagaaatttcaggtgggggtaaccctatgtaggtggggg
taACATTTTT Run BLAST on NCBI transcript from alignment at scaffold_168:127759..129224+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050220 ID=TCONS_00050220|Name=TCONS_00050220|organism=Clytia hemisphaerica|type=transcript|length=1466bp|location=Sequence derived from alignment at scaffold_168:127759..129224+ (Clytia hemisphaerica)
aaatttgttttgataacttcaccaagtttataaatcatactttctgtcat
aacatgtcatgataactttcactgatagcatgTCCTGCTGCCTAACTGCC
TATTACCTGATGGCATTAACAAATAATGAGTGTTGTAACTTGCGGCGCAA
GTCACGTCAAACGCTTcattgttttgccactaattttggtcttttttgtt
ccagacattcgcgtgtgctccactacagatttttttcatatttcaattta
aaagtctactcagtgcaaaagagaaatcatgtgttttttaatacgccgtt
cattagctcaaatcaaatgacttagGAGGTttagtgaaatggtggccgaa
ttgccgtcccatgttttgtcagatagttccaagttagagcagttgacagt
atttttacatacaattcaatatggcggatgaaAAGGCGAAAAGGTTTATT
CAGAAAGTGGATCTTAGTTGAAATCCAATTCCATTGGCCTTAGATagatt
tcataggaaaatatACAAAACTAATACAAAAAGATatcattaatataaaa
cttaattGGCATTATATCAAAGTGTACTCTTGGGTACTTAATAAGCATCC
CCCACCTGCTAATTAATGGACAGGACATCCATATTCCGGGGCTTAGTGGT
GTAGTGGTCAATTCCCACTGTAGTATTagggttcacttggcaagtgaaca
taCCTTCGAATTACTACTCTGATACNTCGTTCTTGACTCCCGTCTGGGAG
GTCCGAGTTCAATTCCCACTGTAGTATTagggttcacttggcaagtgaac
ataCCTTCGATGCGAATTACTACTCTGATACAAAAGTGTGGATGATATGC
CAGCCATGGTGGTGTGTGGTGTCACTCATCCCCTTCTGCATCTGGGACAA
GCTATTAGCTCTTCTGCACAGTTCGAGTGTCACCACTATGCATCATGGTA
TCTGCGTCTCGTTTGCACAGAACCAGTGGTGTCTGGACAGCGATAAGCGT
TCCAacttgaaaaaggaggaattcctactCCCAGTGGGGAGGGCCCATAT
TCCAGCCCCAACCCTCCCCATCTTAttactttttgggaaaatgtttttga
agttctctcttttgtcctaattctgctgtactTTCCTCCTAGGAATCCTT
TTTtgtcatctcttagaacaagcactgcAAATAACCATGAAATTAGATGA
AACTAGGATGAAAAATCAGCATTGAAGGTGCAggaataatccttattcgg
atGGTAGTAAATTATTCTTCTGGGAATAGCACTGCAAAATGAtgttttat
atttaaaattattattaataATTAACTGTAAGCATATTCATAGTGGGCAC
CTCCCCCTGGATCCTAGGGGGGTtgaggattttcagatttttaaaaatag
gtgggggttgggttgatgagaaatttcaggtgggggtaaccctatgtagg
tgggggtaACATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050220-exon-scaffold_168-1491911889:127759..128483 | TCONS_00050220-exon-scaffold_168-1491911889:127759..128483 | Clytia hemisphaerica | exon |
| TCONS_00050220-exon-scaffold_168-1510915933:127759..128483 | TCONS_00050220-exon-scaffold_168-1510915933:127759..128483 | Clytia hemisphaerica | exon |
| TCONS_00050220-exon-scaffold_168-1575043694:127759..128483 | TCONS_00050220-exon-scaffold_168-1575043694:127759..128483 | Clytia hemisphaerica | exon |
| TCONS_00050220-exon-scaffold_168-1491911889:128590..129224 | TCONS_00050220-exon-scaffold_168-1491911889:128590..129224 | Clytia hemisphaerica | exon |
| TCONS_00050220-exon-scaffold_168-1510915933:128590..129224 | TCONS_00050220-exon-scaffold_168-1510915933:128590..129224 | Clytia hemisphaerica | exon |
| TCONS_00050220-exon-scaffold_168-1575043694:128590..129224 | TCONS_00050220-exon-scaffold_168-1575043694:128590..129224 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_168 | supercontig | scaffold_168:127759..129224 + |
Blast
The following BLAST results are available for this feature:
|
