TCONS_00050219 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050219
Unique NameTCONS_00050219
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1018

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050219 ID=TCONS_00050219|Name=TCONS_00050219|organism=Clytia hemisphaerica|type=transcript|length=1018bp
agcgattttcttaaaaaacttagaGAAAAAAAGACCGTAGCACTTAAAGG
GTTAGGGTagttttagtattctgtagCTGATTTGTATGGCACTTTAGTAG
ATCTATTTTTACTTATCAGATTTTGGAACTACCAGCAATAAATTCCTATC
AAATTCtaatttttgaaatagttttatattatttataaaagattctattt
atatTTATTGTACTTTTGTTGTTATACCACACTTTTTATAGCTAAAGatc
taaaaaaaatctttacatCTAAGAGTACATTTTTTTAAGTTGTTGCCCTT
ATAATTACTATAACTGAAAAATGCTAAGATTCTGTGTTTATAGCAGTTcc
gatattttatattttaggcTTTAAATCTAGCTTAAATTGTCTTTCAACTT
GATGTCAGTTTTTCGTTCACGACAAACATTAACTAGTTTTCCAGTTCAAT
TCCCCTTCATTCTCTTCCTTGGTCTCCCTCCACCACTATTGTGATCTTTC
TTCGAATGGCGTTTCCTAAATTTACGTTTTGAATGTTGGAAATTAGCTTT
AACATCACAGTAACGTTCTCTGATGTCTTCTAAAACGATTTCTAATATAT
TAACACGGTCTTTGAAATCCAACGAAGGTTTGAATTGAACTTTATATCGT
CCATTTCTTGTTGTTGTTAATTCCCAACAATTCTCAGATAATAAAGTCGA
CAACGCCGAATTAAATCTAGTCTCTGCTTGCTCATTTTCACTGATTTCTT
CGctcttttcaatttctaatGACGTATTTTCTTCGATTGGCATTCGGTTT
GCTTTTCGTTGTTTCGCTCGATAACAATCAATCCTTGTTTTGATCTCTTC
CTCCATTTTCTTTCATTCCTCCATTTTTTATATAGATTATAGACTACTTT
TTCTTTGAGCTTGTTTATATTCGAGCAACCTTGAATGTGTATTTCAGCCT
TAGTTGTTCATGTGTAGTGTAGTTCAGCCCTTCTGCACATTTTCGGCATT
CTGATTGTCTAATCTTCG
Run BLAST on NCBI

transcript from alignment at scaffold_168:113090..116863+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050219 ID=TCONS_00050219|Name=TCONS_00050219|organism=Clytia hemisphaerica|type=transcript|length=3774bp|location=Sequence derived from alignment at scaffold_168:113090..116863+ (Clytia hemisphaerica)
agcgattttcttaaaaaacttagaGAAAAAAAGACCGTAGCACTTAAAGG
GTTAGGGTagttttagtattctgtagCTGATTTGTATGGCACTTTAGTAG
ATCTATTTTTACTTATCAGATTTTGGAACTACCAGCAATAAATTCCTATC
AAATTCtaatttttgaaatagttttatattatttataaaagattctattt
atatTTATTGTACTTTTGTTGTTATACCACACTTTTTATAGCTAAAGatc
taaaaaaaatctttacatCTAAGAGTACATTTTTTTAAGTTGTTGCCCTT
ATAATTACTATAACTGAAAAATGCTAAGATTCTGTGTTTATAGCAGTTcc
gatattttatattttaggcTTTAAATCTAGCTTAAATTGTCTTTCAACTT
GATGTCAGTTTTTCGTTCACGACAAACATTAACCAGTTTTCCAGTTCAAT
TTCCTTTCATTCTCTTCCTTGGTCTCCCTCCACTACTATTGTGATCTTTC
TTCGAATGGCGTTTCCTAAATTTACGTTTCGAATGTTGGAAATTAGCTTT
AACATCACAGTAACGTTCTCTGATGTCTTCTAAAACGATTTCTAATATAT
TAACACGGTCTTTGAAATCTAACGAAGGTTTGAATTGAACTTTATATCGT
CCATTCCTTGTTGTTGTTAATTCCCAACAATTCTCAGATAATAAAGTCGA
CAACGCTGAATTAAatggcataccggataagtgggatgggggaacctggg
aacctaaagtgggaacctaaatgaacacctgaaaagtgggatgggggaac
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NNNNCCCCCCCCccctatattcaattttttctggaaaagctctTTATAGC
AGTTCCGATATTTTACATTTTAGGTTTTAAATCTAGCTTAAATTGTCTTT
CAACTTGATGTTAGTTTTTCGTTCACGACAAACATTAACTAGTTTTCCAG
TTCAATTCCCCTTCATTCTCTTCCTTGGTCTCCCTCCACCACTATTGTGA
TCTTTCTTCGAATGGCGTTTCCTAAATTTACGTTTTGAATGTTGGAAATT
AGCTTTAACATCACAGTAACGTTCTCTGATGTCTTCTAAAACGATTTCTA
ATATATTAACACGGTCTTTGAAATCCAACGAAGGTTTGAATTGAACTTTA
TATCGTCCATTTCTTGTTGTTGTTAATTCCCAACAATTCTCAGATAATAA
AGTCGACAACGCCGAATTAAATCTAGTCTCTGCTTGCTCATTTTCACTGA
TTTCTTCGctcttttcaatttctaatGACGTATTTTCTTCGATTGGCATT
CGGTTTGCTTTTCGTTGTTTCGCTCGATAACAATCAATCCTTGTTTTGAT
CTCTTCCTCCATTTTCTTTCATTCCTCCATTTTTTATATAGATTATAGAC
TACTTTTTCTTTGAGCTTGTTTATATTCGAGCAACCTTGAATGTGTATTT
CAGCCTTAGTTGTTCATGTGTAGTGTAGTTCAGCCCTTCTGCACATTTTC
GGCATTCTGATTGTCTAATCTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031815XLOC_031815Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050219-exon-scaffold_168-1491911889:113090..113516TCONS_00050219-exon-scaffold_168-1491911889:113090..113516Clytia hemisphaericaexon
TCONS_00050219-exon-scaffold_168-1510915933:113090..113516TCONS_00050219-exon-scaffold_168-1510915933:113090..113516Clytia hemisphaericaexon
TCONS_00050219-exon-scaffold_168-1575043694:113090..113516TCONS_00050219-exon-scaffold_168-1575043694:113090..113516Clytia hemisphaericaexon
TCONS_00050219-exon-scaffold_168-1491911889:116273..116863TCONS_00050219-exon-scaffold_168-1491911889:116273..116863Clytia hemisphaericaexon
TCONS_00050219-exon-scaffold_168-1510915933:116273..116863TCONS_00050219-exon-scaffold_168-1510915933:116273..116863Clytia hemisphaericaexon
TCONS_00050219-exon-scaffold_168-1575043694:116273..116863TCONS_00050219-exon-scaffold_168-1575043694:116273..116863Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_168supercontigscaffold_168:113090..116863 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.148892	0	0	0	0.689458	0.500121	3.17298	2.66224	0.808382	0.411189	2.1091	1.56377	0.787197	0.876901	1.82592	4.98602	2.10838	2.12219	0	0.146947	1.98444	1.36882	2.58042	2.76511	0.839308	1.05405	0.890813	0	0.14511	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050219 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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