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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050183 ID=TCONS_00050183|Name=TCONS_00050183|organism=Clytia hemisphaerica|type=transcript|length=1893bp
TGTAATCAATATTTATCTtccattatgtttttttttgatttgccgCTAAG
GGTTAGGTACTGCTACCTGCGTTGCCGCTTCCAGGGTTGCTACTACCTGG
GTTGTCACTTCCAGGGTTGTCTCTACCTGGGTCGCCACTTCCGAGGTTAC
TACTACCTGGGCTACTCACCCTTTGTGTGTGTGTCATCTTTCTTCTCTTG
ctctcctttcttctcttgctctcctttcttctcttgctcacctttcttct
cttgctctcctttcttctcttgctctcctttcttctcttgctctTCTTTC
TTCCCTTGCTCTCCTTTCTTCCCTTGctctcctttcttctcttgctctTC
CTTAGTGAAATATTTGGATAACCACATTTTTGCGATATCTGCTTTGGTAA
GACTCTTCAAGAAGAAATTGATTGGAATACCAATCTTTCCTTCTTTCGCT
CCCTTTGTGTATTCATCCATAGCTGTCATGATTGTGTTGACAGTCAAAAC
GCTATTCTTTCCATCATCGACCTCGCTAAGAGCAGCCATGGTGCTTTTGA
CGTCAGTTGCACGCAGCTCTGTTACTTTCTTTCCTTCACGAGCATTATCA
GCAGCACTGCTTACGGTTTGATTCGCATTCTGGGTTTCATTGTGCAAAGT
TGCCAATTGTTTCATGGTGGATGCAGGATCGAATTCACTAAAGGCTTTCA
CACCAATTGCGATCTTCTCACTTGTTATTGTTGGGATAAGGCCCTCGCAT
ACCAAACTAACATGGGATAAGATTGATTGCTGACTCAGTAGAGCTTGTAC
TagtagattttttgaaaatgatgaatttattcCAAAGCCTCCTTCCATGT
CAGTAAACCAAGCAGCAATTTTAAAGTGAGATTCTAATGATTCAGCTGTT
GCCAACATTTCTTGGCTAGATGTTGTCGATGTGCTTCTCAACATATGAAC
CATACCAACAAAACACGAACCATAAGTTGCACCTGTAACCAATTTCAATT
GTCGtgttatttttttatctgtttctTCCGCAGTCTCTTCCTTGCCTTGA
ACAGGTTCAAGAACTTTGAGGGTGTCAGTTTTAGGTTTTTTTATCACTGA
CATATCCTTTCATTTGATCAATATCATCAACCATTAGATCTTCTGTATAG
CACGCGTTCCAAGACGTTACTGCTTTGTCAGCATCGATAACAAGTGGAGA
AAAAATACTCGCGTTGGCATGAGTACAGGTTGCTGTGATGACCAAAGTTC
CCACGATTGAATGTTCCTCGCGTTGTTGAGCTGTCTGTTGATGGACTGCA
TTTGAGACTTTTCCACTGATTTTGCTGTCAAAAATACTATCCACTTCTCC
AGAAACAAatgatttcattttcataatGGTCGTTTGGCTATCTTGCTTTT
CATCGTCGAATGAAAAATATTGAGCATTCAACTTGATGGTGTTTGAGCTG
ATTGGTAAATCTGTTTTGATCAGGGACTTGTTGAAATCCAAAGGGCTTTC
AACATGATCATCAATCAATCTAATCTTTGCCTTCTCCTTGTTGATAAGGG
GAAGATTTGTTCGCAATTTCTCTGCATAATTTGTAGCAGCCGAATCTACG
TTTGTGTGCAGCATTTTCATTGACTTGCCTAACTTCGACTCCGTGCCTTT
ATCTTCTTCATTATAGTCAAGCTCTTTAGCAAGCATCTGAAGGCTTCTTA
TTGCGCGTAAGTTATCGTGCATAGCATCTTCTTCTCCATCAATCTGTTGC
TGGTAGACTGCAATGTTTTGTAATGGTACAAATTTCTTAGGATGTACAAC
ATTTCCAAGGATGATGGTAGGATCAAAGGGTATGGCGCCACTTGACCATC
TCTTTGAAGTGATTGATACTGAATTTCTCAGCGCTGTCTTCAA Run BLAST on NCBI protein sequence of TCONS_00050183-protein >TCONS_00050183-protein ID=TCONS_00050183-protein|Name=TCONS_00050183-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MSVIKKPKTDTLKVLEPVQGKEETAEETDKKITRQLKLVTGATYGSCFVG
MVHMLRSTSTTSSQEMLATAESLESHFKIAAWFTDMEGGFGINSSFSKNL
LVQALLSQQSILSHVSLVCEGLIPTITSEKIAIGVKAFSEFDPASTMKQL
ATLHNETQNANQTVSSAADNAREGKKVTELRATDVKSTMAALSEVDDGKN
SVLTVNTIMTAMDEYTKGAKEGKIGIPINFFLKSLTKADIAKMWLSKYFT
KEEQEKKGEQGKKGEQGKKEEQEKKGEQEKKGEQEKKGEQEKKGEQEKKG
EQEKKDDTHTKGE Run BLAST on NCBI transcript from alignment at scaffold_167:1279452..1281344 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050183 ID=TCONS_00050183|Name=TCONS_00050183|organism=Clytia hemisphaerica|type=transcript|length=1893bp|location=Sequence derived from alignment at scaffold_167:1279452..1281344 (Clytia hemisphaerica)
TTGAAGACAGCGCTGAGAAATTCAGTATCAATCACTTCAAAGAGATGGTC
AAGTGGCGCCATACCCTTTGATCCTACCATCATCCTTGGAAATGTTGTAC
ATCCTAAGAAATTTGTACCATTACAAAACATTGCAGTCTACCAGCAACAG
ATTGATGGAGAAGAAGATGCTATGCACGATAACTTACGCGCAATAAGAAG
CCTTCAGATGCTTGCTAAAGAGCTTGACTATAATGAAGAAGATAAAGGCA
CGGAGTCGAAGTTAGGCAAGTCAATGAAAATGCTGCACACAAACGTAGAT
TCGGCTGCTACAAATTATGCAGAGAAATTGCGAACAAATCTTCCCCTTAT
CAACAAGGAGAAGGCAAAGATTAGATTGATTGATGATCATGTTGAAAGCC
CTTTGGATTTCAACAAGTCCCTGATCAAAACAGATTTACCAATCAGCTCA
AACACCATCAAGTTGAATGCTCAATATTTTTCATTCGACGATGAAAAGCA
AGATAGCCAAACGACCattatgaaaatgaaatcatTTGTTTCTGGAGAAG
TGGATAGTATTTTTGACAGCAAAATCAGTGGAAAAGTCTCAAATGCAGTC
CATCAACAGACAGCTCAACAACGCGAGGAACATTCAATCGTGGGAACTTT
GGTCATCACAGCAACCTGTACTCATGCCAACGCGAGTATTTTTTCTCCAC
TTGTTATCGATGCTGACAAAGCAGTAACGTCTTGGAACGCGTGCTATACA
GAAGATCTAATGGTTGATGATATTGATCAAATGAAAGGATATGTCAGTGA
TAAAAAAACCTAAAACTGACACCCTCAAAGTTCTTGAACCTGTTCAAGGC
AAGGAAGAGACTGCGGAagaaacagataaaaaaataacaCGACAATTGAA
ATTGGTTACAGGTGCAACTTATGGTTCGTGTTTTGTTGGTATGGTTCATA
TGTTGAGAAGCACATCGACAACATCTAGCCAAGAAATGTTGGCAACAGCT
GAATCATTAGAATCTCACTTTAAAATTGCTGCTTGGTTTACTGACATGGA
AGGAGGCTTTGgaataaattcatcattttcaaaaaatctactAGTACAAG
CTCTACTGAGTCAGCAATCAATCTTATCCCATGTTAGTTTGGTATGCGAG
GGCCTTATCCCAACAATAACAAGTGAGAAGATCGCAATTGGTGTGAAAGC
CTTTAGTGAATTCGATCCTGCATCCACCATGAAACAATTGGCAACTTTGC
ACAATGAAACCCAGAATGCGAATCAAACCGTAAGCAGTGCTGCTGATAAT
GCTCGTGAAGGAAAGAAAGTAACAGAGCTGCGTGCAACTGACGTCAAAAG
CACCATGGCTGCTCTTAGCGAGGTCGATGATGGAAAGAATAGCGTTTTGA
CTGTCAACACAATCATGACAGCTATGGATGAATACACAAAGGGAGCGAAA
GAAGGAAAGATTGGTATTCCAATCAATTTCTTCTTGAAGAGTCTTACCAA
AGCAGATATCGCAAAAATGTGGTTATCCAAATATTTCACTAAGGAagagc
aagagaagaaaggagagCAAGGGAAGAAAGGAGAGCAAGGGAAGAAAGAa
gagcaagagaagaaaggagagcaagagaagaaaggagagcaagagaagaa
aggtgagcaagagaagaaaggagagcaagagaagaaaggagagCAAGAGA
AGAAAGATGACACACACACAAAGGGTGAGTAGCCCAGGTAGTAGTAACCT
CGGAAGTGGCGACCCAGGTAGAGACAACCCTGGAAGTGACAACCCAGGTA
GTAGCAACCCTGGAAGCGGCAACGCAGGTAGCAGTACCTAACCCTTAGcg
gcaaatcaaaaaaaaacataatggaAGATAAATATTGATTACA Coding sequence (CDS) from alignment at scaffold_167:1279452..1281344 >TCONS_00050183 ID=TCONS_00050183|Name=TCONS_00050183|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_167:1279452..1281344 (Clytia hemisphaerica)
ATGTCAGTGATAAAAAAACCTAAAACTGACACCCTCAAAGTTCTTGAACC
TGTTCAAGGCAAGGAAGAGACTGCGGAagaaacagataaaaaaataacaC
GACAATTGAAATTGGTTACAGGTGCAACTTATGGTTCGTGTTTTGTTGGT
ATGGTTCATATGTTGAGAAGCACATCGACAACATCTAGCCAAGAAATGTT
GGCAACAGCTGAATCATTAGAATCTCACTTTAAAATTGCTGCTTGGTTTA
CTGACATGGAAGGAGGCTTTGgaataaattcatcattttcaaaaaatcta
ctAGTACAAGCTCTACTGAGTCAGCAATCAATCTTATCCCATGTTAGTTT
GGTATGCGAGGGCCTTATCCCAACAATAACAAGTGAGAAGATCGCAATTG
GTGTGAAAGCCTTTAGTGAATTCGATCCTGCATCCACCATGAAACAATTG
GCAACTTTGCACAATGAAACCCAGAATGCGAATCAAACCGTAAGCAGTGC
TGCTGATAATGCTCGTGAAGGAAAGAAAGTAACAGAGCTGCGTGCAACTG
ACGTCAAAAGCACCATGGCTGCTCTTAGCGAGGTCGATGATGGAAAGAAT
AGCGTTTTGACTGTCAACACAATCATGACAGCTATGGATGAATACACAAA
GGGAGCGAAAGAAGGAAAGATTGGTATTCCAATCAATTTCTTCTTGAAGA
GTCTTACCAAAGCAGATATCGCAAAAATGTGGTTATCCAAATATTTCACT
AAGGAagagcaagagaagaaaggagagCAAGGGAAGAAAGGAGAGCAAGG
GAAGAAAGAagagcaagagaagaaaggagagcaagagaagaaaggagagc
aagagaagaaaggtgagcaagagaagaaaggagagcaagagaagaaagga
gagCAAGAGAAGAAAGATGACACACACACAAAGGGTGAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050183-exon-scaffold_167-1491911889:1279452..1281344 | TCONS_00050183-exon-scaffold_167-1491911889:1279452..1281344 | Clytia hemisphaerica | exon |
| TCONS_00050183-exon-scaffold_167-1510915933:1279452..1281344 | TCONS_00050183-exon-scaffold_167-1510915933:1279452..1281344 | Clytia hemisphaerica | exon |
| TCONS_00050183-exon-scaffold_167-1575043694:1279452..1281344 | TCONS_00050183-exon-scaffold_167-1575043694:1279452..1281344 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1279452..1281344 . |
Blast
The following BLAST results are available for this feature:
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