TCONS_00050173 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050173
Unique NameTCONS_00050173
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050173 ID=TCONS_00050173|Name=TCONS_00050173|organism=Clytia hemisphaerica|type=transcript|length=286bp
agagcgtttttagccaaatgagatttcctgaaatatttttctgtcgGCGC
AAGCCATGCTTGTGCCTTCTTTTACCCGCGTGGCTTTGTTTCAATCGGTT
TGCGACCCTGTCTggttaaagcgttttaaagacaaTGTAATGAGAAACAT
GCTAAGGCTTCAGGGGTTTCGACCCGTGAATGATTAGAAAACCCATTTCT
TGGGATCGGGAGGGGTTCTCCGTTATAATGCCATGCCGTGAATAAATCAC
CAAATGAGAGATTaccaaaaagatcgaaacttgttg
Run BLAST on NCBI

transcript from alignment at scaffold_167:939662..939947

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050173 ID=TCONS_00050173|Name=TCONS_00050173|organism=Clytia hemisphaerica|type=transcript|length=286bp|location=Sequence derived from alignment at scaffold_167:939662..939947 (Clytia hemisphaerica)
caacaagtttcgatctttttggtAATCTCTCATTTGGTGATTTATTCACG
GCATGGCATTATAACGGAGAACCCCTCCCGATCCCAAGAAATGGGTTTTC
TAATCATTCACGGGTCGAAACCCCTGAAGCCTTAGCATGTTTCTCATTAC
AttgtctttaaaacgctttaaccAGACAGGGTCGCAAACCGATTGAAACA
AAGCCACGCGGGTAAAAGAAGGCACAAGCATGGCTTGCGCcgacagaaaa
atatttcaggaaatctcatttggctaaaaacgctct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031778XLOC_031778Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050173-exon-scaffold_167-1491911889:939662..939947TCONS_00050173-exon-scaffold_167-1491911889:939662..939947Clytia hemisphaericaexon
TCONS_00050173-exon-scaffold_167-1510915933:939662..939947TCONS_00050173-exon-scaffold_167-1510915933:939662..939947Clytia hemisphaericaexon
TCONS_00050173-exon-scaffold_167-1575043694:939662..939947TCONS_00050173-exon-scaffold_167-1575043694:939662..939947Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:939662..939947 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.2899	1.33981	1.55564	1.52195	2.47044	1.95218	4.12163	1.10246	1.15779	0.478037	0.927988	1.83007	0.609175	0.316317	2.86061	1.95356	0.687606	0	1.46053	1.52833	3.0996	1.29589	1.05022	0.954802	0.491712	1.75536	3.1399	2.68079	1.52496	2.58949
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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