TCONS_00050172 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050172
Unique NameTCONS_00050172
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050172 ID=TCONS_00050172|Name=TCONS_00050172|organism=Clytia hemisphaerica|type=transcript|length=366bp
CCGGATCTTTATTCGGTGGAGCCTCCGACCCTGAGGCCGGAAAACCTACA
GATTCTACCCAATCAAGTGGTTTTAAGTTGGGAGAAAAACCAGTAGATTC
CACCCAATCAAGTGGTTGCTCATTTGGAGGAAAACCTGCAGATTCCACCC
AATCAAGTGGTTTCTCATTCGGAGGAAAACCCGCAGATTCCAGCCAATCG
AGTGGTTTTACATCAAAGGAAACAACGATAGTTCCAACACAACAACCGAA
GACTTCTGATTTAGTCTTTTGGAAATGTCAGAATTGCTTTTTTAAATTCA
ACCGAGAAGACTCAGTAAAGTGTGTTTTTTGTCGGGTGGTAAAAACCTGA
TAAGATTGGAGATgga
Run BLAST on NCBI

protein sequence of TCONS_00050172-protein

>TCONS_00050172-protein ID=TCONS_00050172-protein|Name=TCONS_00050172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
GSLFGGASDPEAGKPTDSTQSSGFKLGEKPVDSTQSSGCSFGGKPADSTQ
SSGFSFGGKPADSSQSSGFTSKETTIVPTQQPKTSDLVFWKCQNCFFKFN
REDSVKCVFCRVVKT
Run BLAST on NCBI

transcript from alignment at scaffold_167:918200..918565

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050172 ID=TCONS_00050172|Name=TCONS_00050172|organism=Clytia hemisphaerica|type=transcript|length=366bp|location=Sequence derived from alignment at scaffold_167:918200..918565 (Clytia hemisphaerica)
tccATCTCCAATCTTATCAGGTTTTTACCACCCGACAAAAAACACACTTT
ACTGAGTCTTCTCGGTTGAATTTAAAAAAGCAATTCTGACATTTCCAAAA
GACTAAATCAGAAGTCTTCGGTTGTTGTGTTGGAACTATCGTTGTTTCCT
TTGATGTAAAACCACTCGATTGGCTGGAATCTGCGGGTTTTCCTCCGAAT
GAGAAACCACTTGATTGGGTGGAATCTGCAGGTTTTCCTCCAAATGAGCA
ACCACTTGATTGGGTGGAATCTACTGGTTTTTCTCCCAACTTAAAACCAC
TTGATTGGGTAGAATCTGTAGGTTTTCCGGCCTCAGGGTCGGAGGCTCCA
CCGAATAAAGATCCGG

Coding sequence (CDS) from alignment at scaffold_167:918200..918565

>TCONS_00050172 ID=TCONS_00050172|Name=TCONS_00050172|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at scaffold_167:918200..918565 (Clytia hemisphaerica)
TCAGGTTTTTACCACCCGACAAAAAACACACTTTACTGAGTCTTCTCGGT
TGAATTTAAAAAAGCAATTCTGACATTTCCAAAAGACTAAATCAGAAGTC
TTCGGTTGTTGTGTTGGAACTATCGTTGTTTCCTTTGATGTAAAACCACT
CGATTGGCTGGAATCTGCGGGTTTTCCTCCGAATGAGAAACCACTTGATT
GGGTGGAATCTGCAGGTTTTCCTCCAAATGAGCAACCACTTGATTGGGTG
GAATCTACTGGTTTTTCTCCCAACTTAAAACCACTTGATTGGGTAGAATC
TGTAGGTTTTCCGGCCTCAGGGTCGGAGGCTCCACCGAATAAAGATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031777XLOC_031777Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050172-proteinTCONS_00050172-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050172-exon-scaffold_167-1491911889:918200..918565TCONS_00050172-exon-scaffold_167-1491911889:918200..918565Clytia hemisphaericaexon
TCONS_00050172-exon-scaffold_167-1510915933:918200..918565TCONS_00050172-exon-scaffold_167-1510915933:918200..918565Clytia hemisphaericaexon
TCONS_00050172-exon-scaffold_167-1575043694:918200..918565TCONS_00050172-exon-scaffold_167-1575043694:918200..918565Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:918200..918565 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.265322	0	0	0.500634	0	0.240807	0.326531	0.815955	0.190423	1.41522	0.915763	0.601987	0.150287	0.31215	2.18135	1.38958	0.930462	1.23773	2.16193	0.7541	0.436967	0	0	0.471112	0	0	0.309854	0.330684	1.93165	0.632754
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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