TCONS_00050163 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050163
Unique NameTCONS_00050163
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050163 ID=TCONS_00050163|Name=TCONS_00050163|organism=Clytia hemisphaerica|type=transcript|length=505bp
AAACTAGACGAAGATATCCCCCGGTTAAAGAAATAGAAAACGTTGGAGAA
TACAAAAATGGGGATTTTACATCCATGATACGGGAAGAATATTGGAAATA
ATGTTGAAAACAGCTCTGTCATATTCTTAATTCTGCTACAGACTGTTATA
TTTCCAGAATTGTCCAACTTTCAAAGTTATTTCATTTTAGTGACCTTGAG
TTGACCATAGGAAAGTCTCTAGCAACACCCTTGCTGACGTTAACGAAATC
AAGCGTTgcttaccgtgaaaagcacaggccaaaatcatatatcgacctgt
GACAGcaaatcgagattctattcagcacgCAATCAACgtagagaaaagta
accatgacgtcaatccaagatcttggattaggTTGATACATGcgtgataa
aatttctattattggttgTCAGAGGTTGATACTTTCTTAAACTCGGCCTC
TGATACTCAGAGTAAGCGTTGCTTGGAAtgataatttttcaacaaacgAG
AAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_167:501460..501964

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050163 ID=TCONS_00050163|Name=TCONS_00050163|organism=Clytia hemisphaerica|type=transcript|length=505bp|location=Sequence derived from alignment at scaffold_167:501460..501964 (Clytia hemisphaerica)
TTTTTCTcgtttgttgaaaaattatcaTTCCAAGCAACGCTTACTCTGAG
TATCAGAGGCCGAGTTTAAGAAAGTATCAACCTCTGAcaaccaataatag
aaattttatcacgCATGTATCAAcctaatccaagatcttggattgacgtc
atggttacttttctctacGTTGATTGcgtgctgaatagaatctcgatttg
CTGTCacaggtcgatatatgattttggcctgtgcttttcacggtaagcAA
CGCTTGATTTCGTTAACGTCAGCAAGGGTGTTGCTAGAGACTTTCCTATG
GTCAACTCAAGGTCACTAAAATGAAATAACTTTGAAAGTTGGACAATTCT
GGAAATATAACAGTCTGTAGCAGAATTAAGAATATGACAGAGCTGTTTTC
AACATTATTTCCAATATTCTTCCCGTATCATGGATGTAAAATCCCCATTT
TTGTATTCTCCAACGTTTTCTATTTCTTTAACCGGGGGATATCTTCGTCT
AGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031768XLOC_031768Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050163-exon-scaffold_167-1491911889:501460..501964TCONS_00050163-exon-scaffold_167-1491911889:501460..501964Clytia hemisphaericaexon
TCONS_00050163-exon-scaffold_167-1510915933:501460..501964TCONS_00050163-exon-scaffold_167-1510915933:501460..501964Clytia hemisphaericaexon
TCONS_00050163-exon-scaffold_167-1575043694:501460..501964TCONS_00050163-exon-scaffold_167-1575043694:501460..501964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:501460..501964 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.119857	0	0	0.265539	0	0	0.308191	0.144262	0.606008	0.500426	0.121431	0.387096	1.83341	2.23514	0.408353	0.511263	0	0.184446	4.84161	4.5331	0.115885	0	0	0	0.257371	1.26334	0	0	0.266064	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050163 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top