TCONS_00050156 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050156
Unique NameTCONS_00050156
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050156 ID=TCONS_00050156|Name=TCONS_00050156|organism=Clytia hemisphaerica|type=transcript|length=381bp
GTGCAATGTCTTTTATTTCATAGATTGTTCTTTTGAGATCTCCAACAGTT
AACAGATTTTCTTGCTGAAACAAATCTATTGTAAATTGACCTGTCAGAAA
TTTAACGTTAATTTCTTTCAAGTATACTAAATGATGCATTTCACAAACTT
CTTTGACCCTTTTATTGGGTAGGACGAACAAGGTTAAGTCGACGTTTTCG
AAAATTTCATTTTCTCTAATGAATAAGCTTTCTATGATGGTATCTTTGTC
TAACTTGTTACCATCATGAGCAAGCCaaatttttgtaaagaaaagttttt
gatggtttttaaTAATCTCATTGCACACATCTTCAAGATCGACAAAAAAT
TTCCATTGCGATAAGGGTATACTACAGAAAA
Run BLAST on NCBI

protein sequence of TCONS_00050156-protein

>TCONS_00050156-protein ID=TCONS_00050156-protein|Name=TCONS_00050156-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
FCSIPLSQWKFFVDLEDVCNEIIKNHQKLFFTKIWLAHDGNKLDKDTIIE
SLFIRENEIFENVDLTLFVLPNKRVKEVCEMHHLVYLKEINVKFLTGQFT
IDLFQQENLLTVGDLKRTIYEIKDIA
Run BLAST on NCBI

transcript from alignment at scaffold_167:422175..422555

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050156 ID=TCONS_00050156|Name=TCONS_00050156|organism=Clytia hemisphaerica|type=transcript|length=381bp|location=Sequence derived from alignment at scaffold_167:422175..422555 (Clytia hemisphaerica)
TTTTCTGTAGTATACCCTTATCGCAATGGAAATTTTTTGTCGATCTTGAA
GATGTGTGCAATGAGATTAttaaaaaccatcaaaaacttttctttacaaa
aatttGGCTTGCTCATGATGGTAACAAGTTAGACAAAGATACCATCATAG
AAAGCTTATTCATTAGAGAAAATGAAATTTTCGAAAACGTCGACTTAACC
TTGTTCGTCCTACCCAATAAAAGGGTCAAAGAAGTTTGTGAAATGCATCA
TTTAGTATACTTGAAAGAAATTAACGTTAAATTTCTGACAGGTCAATTTA
CAATAGATTTGTTTCAGCAAGAAAATCTGTTAACTGTTGGAGATCTCAAA
AGAACAATCTATGAAATAAAAGACATTGCAC

Coding sequence (CDS) from alignment at scaffold_167:422175..422555

>TCONS_00050156 ID=TCONS_00050156|Name=TCONS_00050156|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_167:422175..422555 (Clytia hemisphaerica)
TTCTGTAGTATACCCTTATCGCAATGGAAATTTTTTGTCGATCTTGAAGA
TGTGTGCAATGAGATTAttaaaaaccatcaaaaacttttctttacaaaaa
tttGGCTTGCTCATGATGGTAACAAGTTAGACAAAGATACCATCATAGAA
AGCTTATTCATTAGAGAAAATGAAATTTTCGAAAACGTCGACTTAACCTT
GTTCGTCCTACCCAATAAAAGGGTCAAAGAAGTTTGTGAAATGCATCATT
TAGTATACTTGAAAGAAATTAACGTTAAATTTCTGACAGGTCAATTTACA
ATAGATTTGTTTCAGCAAGAAAATCTGTTAACTGTTGGAGATCTCAAAAG
AACAATCTATGAAATAAAAGACATTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031761XLOC_031761Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050156-proteinTCONS_00050156-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050156-exon-scaffold_167-1491911889:422175..422555TCONS_00050156-exon-scaffold_167-1491911889:422175..422555Clytia hemisphaericaexon
TCONS_00050156-exon-scaffold_167-1510915933:422175..422555TCONS_00050156-exon-scaffold_167-1510915933:422175..422555Clytia hemisphaericaexon
TCONS_00050156-exon-scaffold_167-1575043694:422175..422555TCONS_00050156-exon-scaffold_167-1575043694:422175..422555Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:422175..422555 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.73132	9.32897	3.16363	4.00507	7.81919	4.85376	10.9269	11.3116	1.2062	1.08377	0.618118	1.54848	1.49306	1.52006	2.52121	2.84519	0.270366	2.73654	1.36468	1.10324	1.6608	1.95724	10.8972	8.71463	1.69594	2.96171	1.74546	0.628011	4.26117	4.68184
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050156 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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