TCONS_00050143 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050143
Unique NameTCONS_00050143
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050143 ID=TCONS_00050143|Name=TCONS_00050143|organism=Clytia hemisphaerica|type=transcript|length=406bp
TATTATGTGAGTCAAAACAGAAATTACATTATATAAAAACGTTTACAATA
AATTTAACataaacatctaaaaattcagTTTGATAATTTCGCATACATCC
TCAATTCAAATAATTATCTAATTGCATACAAAATAATTAAGAATAATCTG
AAAGTGAATCATATTTCATAATCAACATGAAAAGTAAATAGTAAAAACAT
ATCCAAATTTTAACAAGGAAAAAAGACGGAAACCAAATTTACAAAGAGAA
TCcttttcagaaataaaaaaattgattttttggaattcgtcgaaagtttg
actttcagaggctcatgcccgggggggggtactaggattgatgggtgtcg
ggtatgtgcgtgccagacctctggacccttacccttagagagactgaatt
ttggtg
Run BLAST on NCBI

transcript from alignment at scaffold_167:133212..133617

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050143 ID=TCONS_00050143|Name=TCONS_00050143|organism=Clytia hemisphaerica|type=transcript|length=406bp|location=Sequence derived from alignment at scaffold_167:133212..133617 (Clytia hemisphaerica)
caccaaaattcagtctctctaagggtaagggtccagaggtctggcacgca
catacccgacacccatcaatcctagtacccccccccgggcatgagcctct
gaaagtcaaactttcgacgaattccaaaaaatcaatttttttatttctga
aaagGATTCTCTTTGTAAATTTGGTTTCCGTCTTTTTTCCTTGTTAAAAT
TTGGATATGTTTTTACTATTTACTTTTCATGTTGATTATGAAATATGATT
CACTTTCAGATTATTCTTAATTATTTTGTATGCAATTAGATAATTATTTG
AATTGAGGATGTATGCGAAATTATCAAActgaatttttagatgtttatGT
TAAATTTATTGTAAACGTTTTTATATAATGTAATTTCTGTTTTGACTCAC
ATAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031748XLOC_031748Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050143-exon-scaffold_167-1491911889:133212..133617TCONS_00050143-exon-scaffold_167-1491911889:133212..133617Clytia hemisphaericaexon
TCONS_00050143-exon-scaffold_167-1510915933:133212..133617TCONS_00050143-exon-scaffold_167-1510915933:133212..133617Clytia hemisphaericaexon
TCONS_00050143-exon-scaffold_167-1575043694:133212..133617TCONS_00050143-exon-scaffold_167-1575043694:133212..133617Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:133212..133617 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.98384	2.25024	1.44155	1.62088	3.98319	4.08944	4.30386	4.79288	3.84284	4.78323	0.436419	1.68453	2.95404	1.51244	3.63047	2.31736	3.27889	2.82106	1.6043	1.7208	3.38282	5.31329	4.5784	3.97793	1.6018	0	6.22073	2.1788	14.6699	10.3241
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050143 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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