TCONS_00050108 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050108
Unique NameTCONS_00050108
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050108 ID=TCONS_00050108|Name=TCONS_00050108|organism=Clytia hemisphaerica|type=transcript|length=551bp
ttgtttttgagtACAATGGACCACCTTGAATTTCACCAGTTTTCTTATCG
ATGAAAACTACAGTTAAATAAATCGTCATTGATTCTTTAATCTCCACAAT
ATGCAGcacaacttgatttttttgacCAGCATTGATAGACATTTTATCGT
TGAATTTCTGTTTTCCAAATTTGGTAACTCCTTTGATATCATCCCAAATA
GGTTGAATGATTTGGTTCTCGTCTGCCTGATGGTAGATTgtcaaccaatc
agctttttCTTGGTGTAGAGGGAGTAATGTCCATTCAATGGTCACATTGG
AATCTTTTGAGACATCTGCCTGATCGGTTGTTGAAAGAATGCGTCCACAT
AATGCTTTGGAAGAAAGAGTTTATATACCAATgtagaaatttcgaaaaag
ttgaaacaaTATGAGCTCTACAGCGGGCGGGACCTTAAAATGGGTTTTAA
GCacactggcggatttaagacaatagaacaagtacgtcggaaacatgcga
aggagtgcaacgctcgttaaaaaacaatgaaactacaATTATAAATCTCT
C
Run BLAST on NCBI

transcript from alignment at scaffold_167:1318250..1318852-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050108 ID=TCONS_00050108|Name=TCONS_00050108|organism=Clytia hemisphaerica|type=transcript|length=603bp|location=Sequence derived from alignment at scaffold_167:1318250..1318852- (Clytia hemisphaerica)
TTGTTTTTGAGTACAATGGACCACCTTGAATTTCACCAGTTTTCTTATCG
ATGAAAACTACAGTTAAATAAATCGTCATTGATTCTTTAATCTCCACAAT
ATGCAGCACAACTTGGTTGTTTTGACCAGCATTGATAGAANAGCTCCTCA
ACATGCAGCACAACTTGATTTTTTTGACCAGCATTGATAGACATTTTATC
GTTGAATTTCTGTTTTCCAAATTTGGTAACTCCTTTGATATCATCCCAAA
TAGGTTGAATGATTTGGTTCTCGTCTGCCTGATGGTAGATTGTCAACCAA
TCAGCTTTTTCTTGGTGTAGAGGGAGTAATGTCCATTCAATGGTCACATT
GGAATCTTTTGAGACATCTGCCTGATCGGTTGTTGAAAGAATGCGTCCAC
ATAATGCTTTGGAAGAAAGAGTTTATATACCAATGTAGAAATTTCGAAAA
AGTTGAAACAATATGAGCTCTACAGCGGGCGGGACCTTAAAATGGGTTTT
AAGCACACTGGCGGATTTAAGACAATAGAACAAGTACGTCGGAAACATGC
GAAGGAGTGCAACGCTCGTTAAAAAACAATGAAACTACAATTATAAATCT
CTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031724XLOC_031724Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050108-exon-scaffold_167-1575043694:1318753..1318852TCONS_00050108-exon-scaffold_167-1575043694:1318753..1318852Clytia hemisphaericaexon
TCONS_00050108-exon-scaffold_167-1575043694:1318250..1318700TCONS_00050108-exon-scaffold_167-1575043694:1318250..1318700Clytia hemisphaericaexon
TCONS_00050108-exon-scaffold_167-1510915933:1318753..1318852TCONS_00050108-exon-scaffold_167-1510915933:1318753..1318852Clytia hemisphaericaexon
TCONS_00050108-exon-scaffold_167-1510915933:1318250..1318700TCONS_00050108-exon-scaffold_167-1510915933:1318250..1318700Clytia hemisphaericaexon
TCONS_00050108-exon-scaffold_167-1491911889:1318753..1318852TCONS_00050108-exon-scaffold_167-1491911889:1318753..1318852Clytia hemisphaericaexon
TCONS_00050108-exon-scaffold_167-1491911889:1318250..1318700TCONS_00050108-exon-scaffold_167-1491911889:1318250..1318700Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1318250..1318852 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.26659	2.93148	0.584862	0.600077	4.95392	3.99928	8.68179	6.51707	5.27054	5.05845	5.38641	4.19858	4.40013	5.05952	9.34378	10.5814	4.66429	3.44139	2.79194	1.69176	2.47517	2.0868	4.27985	3.51484	7.73142	7.91584	2.7512	2.90876	5.95569	3.32205
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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