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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050107 ID=TCONS_00050107|Name=TCONS_00050107|organism=Clytia hemisphaerica|type=transcript|length=1149bpRun BLAST on NCBI protein sequence of TCONS_00050107-protein >TCONS_00050107-protein ID=TCONS_00050107-protein|Name=TCONS_00050107-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp MWSFMLVVCGVFFSTVSGGQIYPSNEVQSVALNSDFHKKWTIQPTPNEEARun BLAST on NCBI transcript from alignment at scaffold_167:1310875..1316383- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050107 ID=TCONS_00050107|Name=TCONS_00050107|organism=Clytia hemisphaerica|type=transcript|length=5509bp|location=Sequence derived from alignment at scaffold_167:1310875..1316383- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_167:1310875..1316383- >TCONS_00050107 ID=TCONS_00050107|Name=TCONS_00050107|organism=Clytia hemisphaerica|type=CDS|length=2964bp|location=Sequence derived from alignment at scaffold_167:1310875..1316383- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00050107 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 5.000e-23 Identity = 45/124 (36.29%), Postives = 67/124 (54.03%), Query Frame = 1
Query: 553 MHAFYSNTKIVLKVNGEWANWGSWNACSLTCGVGKQTRRRRCTDPSSTNGGNDCRGLKIETKNCFIRRCTPVHGKWTQWGKWAQCNTCGGSLDKIRYRSCTNPAPAHNGYVCTGQKSETRHCGL 924
M + ++++V+G ++ W +W ACS+TCG G Q R R C P NGG C+G +E +NC + C PV G W++W W +C G ++ R R+C NP+ H G C G E C +
Sbjct: 4515 MGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPC-PVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNI 4637 HSP 2 Score: 99.3673 bits (246), Expect = 3.002e-22 Identity = 45/109 (41.28%), Postives = 59/109 (54.13%), Query Frame = 1
Query: 592 VNGEWANWGSWNACSLTCGVGKQTRRRRCTDPSSTNGGNDCRGLKIETKNCFIRRCTPVHGKWTQWGKWAQCNTCGGSLDKIRYRSCTNPAPAHNGYVCTGQKSETRHC 918
V+G W+ W W C+ +CG G QTR R C +PS +GG C G +E C IR C PVHG W+ W W C+ G + R R C NP PA G C G +++ + C
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPC-PVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVC 4692 HSP 3 Score: 98.2117 bits (243), Expect = 6.310e-22 Identity = 45/110 (40.91%), Postives = 64/110 (58.18%), Query Frame = 1
Query: 592 VNGEWANWGSWNACSLTCGVGKQTRRRRCTDPSSTNGGNDCRGLKIETKNCFIRRCTPVHGKWTQWGKWAQCN-TCGGSLDKIRYRSCTNPAPAHNGYVCTGQKSETRHC 918
++G+WA W SW+ACS++CG G + R R C+DP GG C G +++ C C P HG W+ W W C+ TC G + RYR+C NP P++ G C G S+ + C
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC-PTHGNWSPWSGWGTCSRTCNGGQMR-RYRTCDNPPPSNGGRACGGPDSQIQRC 4806 HSP 4 Score: 92.4337 bits (228), Expect = 5.622e-20 Identity = 43/110 (39.09%), Postives = 61/110 (55.45%), Query Frame = 1
Query: 592 VNGEWANWGSWNACSLTCGVGKQTRRRRCTDPSSTNGGNDCRGLKIETKNCFIRRCTPVHGKWTQWGKWAQCN-TCGGSLDKIRYRSCTNPAPAHNGYVCTGQKSETRHC 918
V+G W+ W W CS +CG G QTR R C +P GG+ C G + + + C R C P+HGKW W W+ C+ +CGG + R R C++P P + G C G ++ C
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC-PIHGKWATWASWSACSVSCGGGARQ-RTRGCSDPVPQYGGRKCEGSDVQSDFC 4749 HSP 5 Score: 84.3445 bits (207), Expect = 2.532e-17 Identity = 39/110 (35.45%), Postives = 53/110 (48.18%), Query Frame = 1
Query: 595 NGEWANWGSWNACSLTCGVGKQTRRRRCTDPSSTNGGNDCRGLKIETKNCFIRRCTPVHGKWTQWGKWAQCNTCGGSLDKIRYRSCTNPAPAHNGYVCTGQKSETRHCGL 924
+G W+ W W CS TC G+ R R C +P +NGG C G + + C C PV G W W W+QC+ G +K R R C +P P G C G ++ C +
Sbjct: 4757 HGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC-PVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNV 4865 The following BLAST results are available for this feature:
BLAST of TCONS_00050107 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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